RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 DLGAP5Q15398 846 aa23.59■■□□□ 1.37
PNKP-213ENST00000599543 REM2Q8IYK8 340 aaPredicted RBP23.59■■□□□ 1.37
PNKP-213ENST00000599543 CERS5Q8N5B7 392 aa23.59■■□□□ 1.37
PNKP-213ENST00000599543 CDCA7LQ96GN5 454 aa23.59■■□□□ 1.37
PNKP-213ENST00000599543 KAZALD1Q96I82 304 aa23.59■■□□□ 1.37
PNKP-213ENST00000599543 ZBED3Q96IU2 234 aaPredicted RBP23.59■■□□□ 1.37
PNKP-213ENST00000599543 BICC1Q9H694 974 aaKnown RBP23.59■■□□□ 1.37
PNKP-213ENST00000599543 ARAP2Q8WZ64 1704 aa23.59■■□□□ 1.37
PNKP-213ENST00000599543 COL1A1P02452 1464 aaPredicted RBP23.58■■□□□ 1.37
PNKP-213ENST00000599543 F8W031 263 aaPredicted RBP23.58■■□□□ 1.37
PNKP-213ENST00000599543 SSH1Q8WYL5 1049 aa23.58■■□□□ 1.37
PNKP-213ENST00000599543 RNF186Q9NXI6 227 aa23.58■■□□□ 1.37
PNKP-213ENST00000599543 JAG2Q9Y219 1238 aa23.58■■□□□ 1.37
PNKP-213ENST00000599543 UBE2Q2LH0YL09 131 aa23.57■■□□□ 1.36
PNKP-213ENST00000599543 FKBP1AP62942 108 aaKnown RBP23.57■■□□□ 1.36
PNKP-213ENST00000599543 HNRNPUQ00839 825 aaKnown RBP eCLIP23.57■■□□□ 1.36
PNKP-213ENST00000599543 SLFN5Q08AF3 891 aa23.57■■□□□ 1.36
PNKP-213ENST00000599543 UBE4AQ14139 1066 aa23.57■■□□□ 1.36
PNKP-213ENST00000599543 CSRNP1Q96S65 589 aa23.57■■□□□ 1.36
PNKP-213ENST00000599543 MROH5Q6ZUA9 1318 aa23.57■■□□□ 1.36
PNKP-213ENST00000599543 MYO1BO43795 1136 aa23.56■■□□□ 1.36
PNKP-213ENST00000599543 TRPA1O75762 1119 aa23.56■■□□□ 1.36
PNKP-213ENST00000599543 MTMR14Q8NCE2 650 aa23.56■■□□□ 1.36
PNKP-213ENST00000599543 PUS3Q9BZE2 481 aaKnown RBP23.56■■□□□ 1.36
PNKP-213ENST00000599543 RABL6Q3YEC7 729 aaPredicted RBP23.55■■□□□ 1.36
PNKP-213ENST00000599543 MCOLN1Q9GZU1 580 aa23.55■■□□□ 1.36
PNKP-213ENST00000599543 DGKZQ13574 1117 aa23.54■■□□□ 1.36
PNKP-213ENST00000599543 CFAP100Q494V2 611 aa23.54■■□□□ 1.36
PNKP-213ENST00000599543 ARMC9Q7Z3E5 817 aa23.54■■□□□ 1.36
PNKP-213ENST00000599543 DEFB129Q9H1M3 183 aa23.54■■□□□ 1.36
PNKP-213ENST00000599543 CCDC85CA6NKD9 419 aa23.53■■□□□ 1.36
PNKP-213ENST00000599543 HIBADHP31937 336 aaKnown RBP23.53■■□□□ 1.36
PNKP-213ENST00000599543 GYG1P46976 350 aa23.53■■□□□ 1.36
PNKP-213ENST00000599543 PRKG1Q13976 671 aa23.53■■□□□ 1.36
PNKP-213ENST00000599543 ALDH1L2Q3SY69 923 aa23.53■■□□□ 1.36
PNKP-213ENST00000599543 ANKRD44Q8N8A2 993 aa23.53■■□□□ 1.36
PNKP-213ENST00000599543 RIPOR2Q9Y4F9 1068 aa23.53■■□□□ 1.36
PNKP-213ENST00000599543 FAM205AQ6ZU69 1335 aa23.53■■□□□ 1.36
PNKP-213ENST00000599543 SPDYE2BA6NHP3 402 aa23.52■■□□□ 1.36
PNKP-213ENST00000599543 SPDYE6P0CI01 402 aa23.52■■□□□ 1.36
PNKP-213ENST00000599543 RBM5P52756 815 aaKnown RBP eCLIP23.52■■□□□ 1.36
PNKP-213ENST00000599543 MFSD14BQ5SR56 506 aa23.52■■□□□ 1.36
PNKP-213ENST00000599543 VPS37DQ86XT2 251 aa23.52■■□□□ 1.36
PNKP-213ENST00000599543 TDRD7Q8NHU6 1098 aaKnown RBP23.52■■□□□ 1.36
PNKP-213ENST00000599543 SMC4Q9NTJ3 1288 aa23.52■■□□□ 1.36
PNKP-213ENST00000599543 PCDHAC2Q9Y5I4 1007 aa23.52■■□□□ 1.36
PNKP-213ENST00000599543 PPP2R3BQ9Y5P8 575 aa23.52■■□□□ 1.36
PNKP-213ENST00000599543 METTL24Q5JXM2 366 aa23.51■■□□□ 1.35
PNKP-213ENST00000599543 FAM84BQ96KN1 310 aaPredicted RBP23.51■■□□□ 1.35
PNKP-213ENST00000599543 CLRN2A0PK11 232 aa23.5■■□□□ 1.35
PNKP-213ENST00000599543 LRRC24Q50LG9 513 aa23.5■■□□□ 1.35
PNKP-213ENST00000599543 PRMT6Q96LA8 375 aaPredicted RBP23.5■■□□□ 1.35
PNKP-213ENST00000599543 USP44Q9H0E7 712 aa23.5■■□□□ 1.35
PNKP-213ENST00000599543 VEZTQ9HBM0 779 aa23.5■■□□□ 1.35
PNKP-213ENST00000599543 ANGEL1Q9UNK9 670 aaKnown RBP23.5■■□□□ 1.35
PNKP-213ENST00000599543 PTPN12Q05209 780 aaKnown RBP23.49■■□□□ 1.35
PNKP-213ENST00000599543 TTF2Q9UNY4 1162 aaKnown RBP23.49■■□□□ 1.35
PNKP-213ENST00000599543 MYH13Q9UKX3 1938 aa23.49■■□□□ 1.35
PNKP-213ENST00000599543 MKRN3Q13064 507 aaKnown RBP23.48■■□□□ 1.35
PNKP-213ENST00000599543 CAVIN4Q5BKX8 364 aa23.48■■□□□ 1.35
PNKP-213ENST00000599543 SERPINA10Q9UK55 444 aa23.48■■□□□ 1.35
PNKP-213ENST00000599543 PDE8BO95263 885 aa23.47■■□□□ 1.35
PNKP-213ENST00000599543 KLHDC4Q8TBB5 520 aa23.47■■□□□ 1.35
PNKP-213ENST00000599543 SSC5DA1L4H1 1573 aa23.47■■□□□ 1.35
PNKP-213ENST00000599543 PPP1R12BO60237 982 aaPredicted RBP23.46■■□□□ 1.35
PNKP-213ENST00000599543 FRAT2O75474 233 aaPredicted RBP23.46■■□□□ 1.35
PNKP-213ENST00000599543 CT47B1P0C2W7 299 aaPredicted RBP23.46■■□□□ 1.35
PNKP-213ENST00000599543 SREBF2Q12772 1141 aa23.46■■□□□ 1.35
PNKP-213ENST00000599543 SUPT20HL1Q3ZLR7 823 aa23.46■■□□□ 1.35
PNKP-213ENST00000599543 LDLRAD1Q5T700 205 aa23.46■■□□□ 1.35
PNKP-213ENST00000599543 VGLL2Q8N8G2 317 aa23.46■■□□□ 1.35
PNKP-213ENST00000599543 FZD1Q9UP38 647 aa23.46■■□□□ 1.35
PNKP-213ENST00000599543 AOX1Q06278 1338 aa23.45■■□□□ 1.34
PNKP-213ENST00000599543 TNFAIP1Q13829 316 aa23.45■■□□□ 1.34
PNKP-213ENST00000599543 FBXO33Q7Z6M2 555 aa23.45■■□□□ 1.34
PNKP-213ENST00000599543 TRMT2AQ8IZ69 625 aaKnown RBP23.45■■□□□ 1.34
PNKP-213ENST00000599543 IQSEC3Q9UPP2 1182 aaPredicted RBP23.45■■□□□ 1.34
PNKP-213ENST00000599543 TM4SF4P48230 202 aa23.44■■□□□ 1.34
PNKP-213ENST00000599543 PUM3Q15397 648 aaKnown RBP23.44■■□□□ 1.34
PNKP-213ENST00000599543 MAP3K11Q16584 847 aa23.44■■□□□ 1.34
PNKP-213ENST00000599543 LAMB1P07942 1786 aa23.44■■□□□ 1.34
PNKP-213ENST00000599543 CHAF1AQ13111 956 aaPredicted RBP23.43■■□□□ 1.34
PNKP-213ENST00000599543 RASA3Q14644 834 aa23.43■■□□□ 1.34
PNKP-213ENST00000599543 SPDYE2Q495Y8 402 aa23.43■■□□□ 1.34
PNKP-213ENST00000599543 SPRYD7Q5W111 196 aa23.43■■□□□ 1.34
PNKP-213ENST00000599543 TBC1D22AQ8WUA7 517 aa23.43■■□□□ 1.34
PNKP-213ENST00000599543 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.43■■□□□ 1.34
PNKP-213ENST00000599543 OTOFQ9HC10 1997 aa23.43■■□□□ 1.34
PNKP-213ENST00000599543 TBC1D8O95759 1140 aa23.42■■□□□ 1.34
PNKP-213ENST00000599543 IFIT1P09914 478 aaKnown RBP23.42■■□□□ 1.34
PNKP-213ENST00000599543 UBTFL1P0CB47 393 aaPredicted RBP23.42■■□□□ 1.34
PNKP-213ENST00000599543 NBPF12Q5TAG4 269 aaPredicted RBP23.42■■□□□ 1.34
PNKP-213ENST00000599543 DZIP1LQ8IYY4 767 aaKnown RBP23.42■■□□□ 1.34
PNKP-213ENST00000599543 SLC10A4Q96EP9 437 aa23.42■■□□□ 1.34
PNKP-213ENST00000599543 TDRD3Q9H7E2 651 aaKnown RBP23.42■■□□□ 1.34
PNKP-213ENST00000599543 ZNF70Q9UC06 446 aaPredicted RBP23.42■■□□□ 1.34
PNKP-213ENST00000599543 KIF16BQ96L93 1317 aa23.41■■□□□ 1.34
PNKP-213ENST00000599543 CRKP46108 304 aa23.41■■□□□ 1.34
PNKP-213ENST00000599543 IREB2P48200 963 aaKnown RBP23.41■■□□□ 1.34
PNKP-213ENST00000599543 CTU1Q7Z7A3 348 aaKnown RBP23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms