RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 TMEM88BA6NKF7 163 aa20.05■□□□□ 0.8
TRIM28-213ENST00000598355 TRAF5O00463 557 aa20.05■□□□□ 0.8
TRIM28-213ENST00000598355 SLC5A1P13866 664 aa20.05■□□□□ 0.8
TRIM28-213ENST00000598355 ATP8B2P98198 1209 aa20.05■□□□□ 0.8
TRIM28-213ENST00000598355 FMR1Q06787 632 aaKnown RBP eCLIP20.05■□□□□ 0.83e-11■■□□□ 12
TRIM28-213ENST00000598355 ATP2B3Q16720 1220 aa20.05■□□□□ 0.8
TRIM28-213ENST00000598355 CAVIN4Q5BKX8 364 aa20.05■□□□□ 0.8
TRIM28-213ENST00000598355 CDC37L1Q7L3B6 337 aa20.05■□□□□ 0.8
TRIM28-213ENST00000598355 KIAA0825Q8IV33 1275 aa20.05■□□□□ 0.8
TRIM28-213ENST00000598355 FBXW7Q969H0 707 aa20.05■□□□□ 0.8
TRIM28-213ENST00000598355 KLRG1Q96E93 195 aa20.05■□□□□ 0.8
TRIM28-213ENST00000598355 GGA3Q9NZ52 723 aa20.05■□□□□ 0.8
TRIM28-213ENST00000598355 PCNTO95613 3336 aa20.05■□□□□ 0.8
TRIM28-213ENST00000598355 ASTN2O75129 1339 aaPredicted RBP20.04■□□□□ 0.8
TRIM28-213ENST00000598355 PDE3AQ14432 1141 aa20.04■□□□□ 0.8
TRIM28-213ENST00000598355 OGFOD1Q8N543 542 aa20.04■□□□□ 0.8
TRIM28-213ENST00000598355 MTMR14Q8NCE2 650 aa20.04■□□□□ 0.8
TRIM28-213ENST00000598355 C1orf115Q9H7X2 142 aa20.04■□□□□ 0.8
TRIM28-213ENST00000598355 CNTNAP1P78357 1384 aa20.04■□□□□ 0.8
TRIM28-213ENST00000598355 WNT10BO00744 389 aa20.03■□□□□ 0.8
TRIM28-213ENST00000598355 BCAMP50895 628 aa20.03■□□□□ 0.8
TRIM28-213ENST00000598355 RBM26Q5T8P6 1007 aaKnown RBP20.03■□□□□ 0.8
TRIM28-213ENST00000598355 CST9Q5W186 159 aa20.03■□□□□ 0.8
TRIM28-213ENST00000598355 CEP85Q6P2H3 762 aa20.03■□□□□ 0.8
TRIM28-213ENST00000598355 DDX19BQ9UMR2 479 aa20.03■□□□□ 0.8
TRIM28-213ENST00000598355 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.03■□□□□ 0.8
TRIM28-213ENST00000598355 SCARF1Q14162 830 aa20.02■□□□□ 0.8
TRIM28-213ENST00000598355 MFSD14BQ5SR56 506 aa20.02■□□□□ 0.8
TRIM28-213ENST00000598355 JMYQ8N9B5 988 aa20.02■□□□□ 0.8
TRIM28-213ENST00000598355 HDAC9Q9UKV0 1011 aa20.02■□□□□ 0.8
TRIM28-213ENST00000598355 NBPF9Q3BBW0 867 aa20.01■□□□□ 0.79
TRIM28-213ENST00000598355 KRT26Q7Z3Y9 468 aa20.01■□□□□ 0.79
TRIM28-213ENST00000598355 VPS37DQ86XT2 251 aa20.01■□□□□ 0.79
TRIM28-213ENST00000598355 DCPSQ96C86 337 aaKnown RBP20.01■□□□□ 0.79
TRIM28-213ENST00000598355 ZBTB40Q9NUA8 1239 aa20.01■□□□□ 0.79
TRIM28-213ENST00000598355 JAG2Q9Y219 1238 aa20.01■□□□□ 0.79
TRIM28-213ENST00000598355 COG6Q9Y2V7 657 aa20.01■□□□□ 0.79
TRIM28-213ENST00000598355 NOP58Q9Y2X3 529 aaKnown RBP20.01■□□□□ 0.79
TRIM28-213ENST00000598355 AKAP11Q9UKA4 1901 aa20.01■□□□□ 0.79
TRIM28-213ENST00000598355 PAPPA2Q9BXP8 1791 aa20■□□□□ 0.79
TRIM28-213ENST00000598355 RASSF10A6NK89 507 aa20■□□□□ 0.79
TRIM28-213ENST00000598355 TFCP2Q12800 502 aa20■□□□□ 0.79
TRIM28-213ENST00000598355 ANGEL2Q5VTE6 544 aaKnown RBP20■□□□□ 0.79
TRIM28-213ENST00000598355 TBC1D22AQ8WUA7 517 aa20■□□□□ 0.79
TRIM28-213ENST00000598355 IQSEC3Q9UPP2 1182 aaPredicted RBP20■□□□□ 0.79
TRIM28-213ENST00000598355 A0A1B0GUL7 405 aa19.99■□□□□ 0.79
TRIM28-213ENST00000598355 ADM5C9JUS6 153 aa19.99■□□□□ 0.79
TRIM28-213ENST00000598355 C20orf194Q5TEA3 1177 aa19.99■□□□□ 0.79
TRIM28-213ENST00000598355 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.99■□□□□ 0.79
TRIM28-213ENST00000598355 AKAP2Q9Y2D5 859 aa19.99■□□□□ 0.79
TRIM28-213ENST00000598355 PDS5AQ29RF7 1337 aaKnown RBP19.99■□□□□ 0.79
TRIM28-213ENST00000598355 SEMA3EO15041 775 aa19.98■□□□□ 0.79
TRIM28-213ENST00000598355 ADORA1P30542 326 aa19.98■□□□□ 0.79
TRIM28-213ENST00000598355 PHKA1P46020 1223 aa19.98■□□□□ 0.79
TRIM28-213ENST00000598355 USP48Q86UV5 1035 aa19.98■□□□□ 0.79
TRIM28-213ENST00000598355 SULF1Q8IWU6 871 aa19.98■□□□□ 0.79
TRIM28-213ENST00000598355 SUGT1Q9Y2Z0 365 aa19.98■□□□□ 0.79
TRIM28-213ENST00000598355 TLL2Q9Y6L7 1015 aa19.98■□□□□ 0.79
TRIM28-213ENST00000598355 SPDYE2BA6NHP3 402 aa19.97■□□□□ 0.79
TRIM28-213ENST00000598355 CELF2O95319 508 aaKnown RBP19.97■□□□□ 0.79
TRIM28-213ENST00000598355 SPDYE6P0CI01 402 aa19.97■□□□□ 0.79
TRIM28-213ENST00000598355 GRIK5Q16478 980 aa19.97■□□□□ 0.79
TRIM28-213ENST00000598355 GPR108Q9NPR9 543 aa19.97■□□□□ 0.79
TRIM28-213ENST00000598355 SERPINA10Q9UK55 444 aa19.97■□□□□ 0.79
TRIM28-213ENST00000598355 MYH2Q9UKX2 1941 aa19.97■□□□□ 0.79
TRIM28-213ENST00000598355 SALL1Q9NSC2 1324 aa19.97■□□□□ 0.79
TRIM28-213ENST00000598355 HDLBPQ00341 1268 aaKnown RBP19.96■□□□□ 0.79
TRIM28-213ENST00000598355 G3BP1Q13283 466 aaKnown RBP eCLIP19.96■□□□□ 0.791e-8■■□□□ 12.3
TRIM28-213ENST00000598355 CCDC102BQ68D86 513 aa19.96■□□□□ 0.79
TRIM28-213ENST00000598355 DLK2Q6UY11 383 aa19.96■□□□□ 0.79
TRIM28-213ENST00000598355 HHIPL1Q96JK4 782 aa19.96■□□□□ 0.79
TRIM28-213ENST00000598355 PCDHAC2Q9Y5I4 1007 aa19.96■□□□□ 0.79
TRIM28-213ENST00000598355 MAST2Q6P0Q8 1798 aa19.95■□□□□ 0.78
TRIM28-213ENST00000598355 F8W031 263 aaPredicted RBP19.95■□□□□ 0.78
TRIM28-213ENST00000598355 TIMM10P62072 90 aa19.95■□□□□ 0.78
TRIM28-213ENST00000598355 CHAF1AQ13111 956 aaPredicted RBP19.95■□□□□ 0.78
TRIM28-213ENST00000598355 DLGAP5Q15398 846 aa19.95■□□□□ 0.78
TRIM28-213ENST00000598355 CFAP100Q494V2 611 aa19.95■□□□□ 0.78
TRIM28-213ENST00000598355 SAPCD2Q86UD0 394 aa19.95■□□□□ 0.78
TRIM28-213ENST00000598355 WDR66Q8TBY9 1149 aa19.95■□□□□ 0.78
TRIM28-213ENST00000598355 XAGE2Q96GT9 111 aa19.95■□□□□ 0.78
TRIM28-213ENST00000598355 YTHDC1Q96MU7 727 aaKnown RBP19.95■□□□□ 0.78
TRIM28-213ENST00000598355 CHMP4BQ9H444 224 aaKnown RBP19.95■□□□□ 0.78
TRIM28-213ENST00000598355 TTF2Q9UNY4 1162 aaKnown RBP19.95■□□□□ 0.78
TRIM28-213ENST00000598355 AOX1Q06278 1338 aa19.95■□□□□ 0.78
TRIM28-213ENST00000598355 LAMB1P07942 1786 aa19.94■□□□□ 0.78
TRIM28-213ENST00000598355 FRAT2O75474 233 aaPredicted RBP19.94■□□□□ 0.78
TRIM28-213ENST00000598355 APOBEC3FQ8IUX4 373 aaKnown RBP19.94■□□□□ 0.78
TRIM28-213ENST00000598355 SIRT2Q8IXJ6 389 aa19.94■□□□□ 0.78
TRIM28-213ENST00000598355 RPAP2Q8IXW5 612 aaPredicted RBP19.94■□□□□ 0.78
TRIM28-213ENST00000598355 CDCA5Q96FF9 252 aa19.94■□□□□ 0.78
TRIM28-213ENST00000598355 MRIQ9BWK5 157 aa19.94■□□□□ 0.78
TRIM28-213ENST00000598355 GNL3LQ9NVN8 582 aaKnown RBP19.94■□□□□ 0.78
TRIM28-213ENST00000598355 MKRN1Q9UHC7 482 aaKnown RBP19.94■□□□□ 0.78
TRIM28-213ENST00000598355 MYO5AQ9Y4I1 1855 aaKnown RBP19.94■□□□□ 0.78
TRIM28-213ENST00000598355 SURF6O75683 361 aaKnown RBP19.93■□□□□ 0.78
TRIM28-213ENST00000598355 RASGRF1Q13972 1273 aa19.93■□□□□ 0.78
TRIM28-213ENST00000598355 PRMT6Q96LA8 375 aaPredicted RBP19.93■□□□□ 0.78
TRIM28-213ENST00000598355 DENND2AQ9ULE3 1009 aa19.93■□□□□ 0.78
TRIM28-213ENST00000598355 MAST3O60307 1309 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms