RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, human

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-223	ENST00000591239	CAVIN4	Q5BKX8	364 aa		11.43	□□□□□ -0.58
DNMT1-223	ENST00000591239	KIAA0825	Q8IV33	1275 aa		11.43	□□□□□ -0.58
DNMT1-223	ENST00000591239	LPIN2	Q92539	896 aa		11.43	□□□□□ -0.58
DNMT1-223	ENST00000591239	GLIS2	Q9BZE0	524 aa	Predicted RBP	11.43	□□□□□ -0.58
DNMT1-223	ENST00000591239	ZNF646	O15015	1829 aa	Predicted RBP	11.43	□□□□□ -0.58
DNMT1-223	ENST00000591239	FAM205A	Q6ZU69	1335 aa		11.42	□□□□□ -0.58
DNMT1-223	ENST00000591239	SLC5A1	P13866	664 aa		11.42	□□□□□ -0.58
DNMT1-223	ENST00000591239	MMP14	P50281	582 aa		11.42	□□□□□ -0.58
DNMT1-223	ENST00000591239	BCAM	P50895	628 aa		11.42	□□□□□ -0.58
DNMT1-223	ENST00000591239	SCARF1	Q14162	830 aa		11.42	□□□□□ -0.58
DNMT1-223	ENST00000591239	CDC37L1	Q7L3B6	337 aa		11.42	□□□□□ -0.58
DNMT1-223	ENST00000591239	CERS5	Q8N5B7	392 aa		11.42	□□□□□ -0.58
DNMT1-223	ENST00000591239	DCPS	Q96C86	337 aa	Known RBP	11.42	□□□□□ -0.58
DNMT1-223	ENST00000591239	KLRG1	Q96E93	195 aa		11.42	□□□□□ -0.58
DNMT1-223	ENST00000591239	YTHDC1	Q96MU7	727 aa	Known RBP	11.42	□□□□□ -0.58
DNMT1-223	ENST00000591239	JAG2	Q9Y219	1238 aa		11.42	□□□□□ -0.58
DNMT1-223	ENST00000591239	ASTN2	O75129	1339 aa	Predicted RBP	11.41	□□□□□ -0.58
DNMT1-223	ENST00000591239	FRAT2	O75474	233 aa	Predicted RBP	11.41	□□□□□ -0.58
DNMT1-223	ENST00000591239	FKBP1A	P62942	108 aa	Known RBP	11.41	□□□□□ -0.58
DNMT1-223	ENST00000591239	ATP8B2	P98198	1209 aa		11.41	□□□□□ -0.58
DNMT1-223	ENST00000591239	ATP2B3	Q16720	1220 aa		11.41	□□□□□ -0.58
DNMT1-223	ENST00000591239	CST9	Q5W186	159 aa		11.41	□□□□□ -0.58
DNMT1-223	ENST00000591239	KRT26	Q7Z3Y9	468 aa		11.41	□□□□□ -0.58
DNMT1-223	ENST00000591239	USP48	Q86UV5	1035 aa		11.41	□□□□□ -0.58
DNMT1-223	ENST00000591239	C1orf115	Q9H7X2	142 aa		11.41	□□□□□ -0.58
DNMT1-223	ENST00000591239	GGA3	Q9NZ52	723 aa		11.41	□□□□□ -0.58
DNMT1-223	ENST00000591239	HDAC9	Q9UKV0	1011 aa		11.41	□□□□□ -0.58
DNMT1-223	ENST00000591239	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	11.41	□□□□□ -0.58
DNMT1-223	ENST00000591239		F8W031	263 aa	Predicted RBP	11.4	□□□□□ -0.58
DNMT1-223	ENST00000591239	WNT10B	O00744	389 aa		11.4	□□□□□ -0.58
DNMT1-223	ENST00000591239	POLA2	Q14181	598 aa		11.4	□□□□□ -0.58
DNMT1-223	ENST00000591239	MVP	Q14764	893 aa	Known RBP	11.4	□□□□□ -0.58
DNMT1-223	ENST00000591239	NBPF9	Q3BBW0	867 aa		11.4	□□□□□ -0.58
DNMT1-223	ENST00000591239	MFSD14B	Q5SR56	506 aa		11.4	□□□□□ -0.58
DNMT1-223	ENST00000591239	ANGEL2	Q5VTE6	544 aa	Known RBP	11.4	□□□□□ -0.58
DNMT1-223	ENST00000591239	SSH3	Q8TE77	659 aa		11.4	□□□□□ -0.58
DNMT1-223	ENST00000591239	COG6	Q9Y2V7	657 aa		11.4	□□□□□ -0.58
DNMT1-223	ENST00000591239	ADM5	C9JUS6	153 aa		11.39	□□□□□ -0.59
DNMT1-223	ENST00000591239	CELF2	O95319	508 aa	Known RBP	11.39	□□□□□ -0.59
DNMT1-223	ENST00000591239	TFCP2	Q12800	502 aa		11.39	□□□□□ -0.59
DNMT1-223	ENST00000591239	CHAF1A	Q13111	956 aa	Predicted RBP	11.39	□□□□□ -0.59
DNMT1-223	ENST00000591239	G3BP1	Q13283	466 aa	Known RBP eCLIP	11.39	□□□□□ -0.59	3e-8	■□□□□ 9.4
DNMT1-223	ENST00000591239	DLK2	Q6UY11	383 aa		11.39	□□□□□ -0.59
DNMT1-223	ENST00000591239	SULF1	Q8IWU6	871 aa		11.39	□□□□□ -0.59
DNMT1-223	ENST00000591239	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	11.39	□□□□□ -0.59
DNMT1-223	ENST00000591239	MKRN1	Q9UHC7	482 aa	Known RBP	11.39	□□□□□ -0.59
DNMT1-223	ENST00000591239	POLR2A	P24928	1970 aa	Known RBP	11.39	□□□□□ -0.59
DNMT1-223	ENST00000591239	PITPNM2	Q9BZ72	1349 aa		11.38	□□□□□ -0.59
DNMT1-223	ENST00000591239	TIMM10	P62072	90 aa		11.38	□□□□□ -0.59
DNMT1-223	ENST00000591239	PDE3A	Q14432	1141 aa		11.38	□□□□□ -0.59
DNMT1-223	ENST00000591239	DLGAP5	Q15398	846 aa		11.38	□□□□□ -0.59
DNMT1-223	ENST00000591239	C20orf194	Q5TEA3	1177 aa		11.38	□□□□□ -0.59
DNMT1-223	ENST00000591239	MTMR14	Q8NCE2	650 aa		11.38	□□□□□ -0.59
DNMT1-223	ENST00000591239	TBC1D22A	Q8WUA7	517 aa		11.38	□□□□□ -0.59
DNMT1-223	ENST00000591239	ZBED3	Q96IU2	234 aa	Predicted RBP	11.38	□□□□□ -0.59
DNMT1-223	ENST00000591239	ZNF408	Q9H9D4	720 aa		11.38	□□□□□ -0.59
DNMT1-223	ENST00000591239	ABT1	Q9ULW3	272 aa	Known RBP	11.38	□□□□□ -0.59
DNMT1-223	ENST00000591239	DDX19B	Q9UMR2	479 aa		11.38	□□□□□ -0.59
DNMT1-223	ENST00000591239	AKAP2	Q9Y2D5	859 aa		11.38	□□□□□ -0.59
DNMT1-223	ENST00000591239	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	11.38	□□□□□ -0.59
DNMT1-223	ENST00000591239	CNTNAP1	P78357	1384 aa		11.38	□□□□□ -0.59
DNMT1-223	ENST00000591239	TRPM7	Q96QT4	1865 aa		11.38	□□□□□ -0.59
DNMT1-223	ENST00000591239		A0A1B0GUL7	405 aa		11.37	□□□□□ -0.59
DNMT1-223	ENST00000591239	RASSF10	A6NK89	507 aa		11.37	□□□□□ -0.59
DNMT1-223	ENST00000591239	ADORA1	P30542	326 aa		11.37	□□□□□ -0.59
DNMT1-223	ENST00000591239	PHKA1	P46020	1223 aa		11.37	□□□□□ -0.59
DNMT1-223	ENST00000591239	CFAP100	Q494V2	611 aa		11.37	□□□□□ -0.59
DNMT1-223	ENST00000591239	CEP85	Q6P2H3	762 aa		11.37	□□□□□ -0.59
DNMT1-223	ENST00000591239	SAMD1	Q6SPF0	538 aa	Predicted RBP	11.37	□□□□□ -0.59
DNMT1-223	ENST00000591239	JMY	Q8N9B5	988 aa		11.37	□□□□□ -0.59
DNMT1-223	ENST00000591239	ZBTB40	Q9NUA8	1239 aa		11.37	□□□□□ -0.59
DNMT1-223	ENST00000591239	GNL3L	Q9NVN8	582 aa	Known RBP	11.37	□□□□□ -0.59
DNMT1-223	ENST00000591239	TTF2	Q9UNY4	1162 aa	Known RBP	11.37	□□□□□ -0.59
DNMT1-223	ENST00000591239	SCAF8	Q9UPN6	1271 aa	Known RBP	11.37	□□□□□ -0.59
DNMT1-223	ENST00000591239	PCDHAC2	Q9Y5I4	1007 aa		11.37	□□□□□ -0.59
DNMT1-223	ENST00000591239	SPDYE2B	A6NHP3	402 aa		11.36	□□□□□ -0.59
DNMT1-223	ENST00000591239	SURF6	O75683	361 aa	Known RBP	11.36	□□□□□ -0.59
DNMT1-223	ENST00000591239	SPDYE6	P0CI01	402 aa		11.36	□□□□□ -0.59
DNMT1-223	ENST00000591239	RBM5	P52756	815 aa	Known RBP eCLIP	11.36	□□□□□ -0.59
DNMT1-223	ENST00000591239	OS9	Q13438	667 aa	Predicted RBP	11.36	□□□□□ -0.59
DNMT1-223	ENST00000591239	GRIK5	Q16478	980 aa		11.36	□□□□□ -0.59
DNMT1-223	ENST00000591239	DEFB115	Q30KQ5	88 aa		11.36	□□□□□ -0.59
DNMT1-223	ENST00000591239	CCDC102B	Q68D86	513 aa		11.36	□□□□□ -0.59
DNMT1-223	ENST00000591239	SAPCD2	Q86UD0	394 aa		11.36	□□□□□ -0.59
DNMT1-223	ENST00000591239	WDR66	Q8TBY9	1149 aa		11.36	□□□□□ -0.59
DNMT1-223	ENST00000591239	XAGE2	Q96GT9	111 aa		11.36	□□□□□ -0.59
DNMT1-223	ENST00000591239	PRMT6	Q96LA8	375 aa	Predicted RBP	11.36	□□□□□ -0.59
DNMT1-223	ENST00000591239	CHMP4B	Q9H444	224 aa	Known RBP	11.36	□□□□□ -0.59
DNMT1-223	ENST00000591239	SERPINA10	Q9UK55	444 aa		11.36	□□□□□ -0.59
DNMT1-223	ENST00000591239	NOP58	Q9Y2X3	529 aa	Known RBP	11.36	□□□□□ -0.59
DNMT1-223	ENST00000591239	TLL2	Q9Y6L7	1015 aa		11.36	□□□□□ -0.59
DNMT1-223	ENST00000591239	VEGFB	P49765	207 aa		11.35	□□□□□ -0.59
DNMT1-223	ENST00000591239	APOBEC3F	Q8IUX4	373 aa	Known RBP	11.35	□□□□□ -0.59
DNMT1-223	ENST00000591239	CDCA5	Q96FF9	252 aa		11.35	□□□□□ -0.59
DNMT1-223	ENST00000591239	NEUROD6	Q96NK8	337 aa		11.35	□□□□□ -0.59
DNMT1-223	ENST00000591239	DENND2A	Q9ULE3	1009 aa		11.35	□□□□□ -0.59
DNMT1-223	ENST00000591239	SUGT1	Q9Y2Z0	365 aa		11.35	□□□□□ -0.59
DNMT1-223	ENST00000591239	COL1A1	P02452	1464 aa	Predicted RBP	11.34	□□□□□ -0.59
DNMT1-223	ENST00000591239	SEMA3E	O15041	775 aa		11.34	□□□□□ -0.59
DNMT1-223	ENST00000591239	MYO1B	O43795	1136 aa		11.34	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms