RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 HNRNPUQ00839 825 aaKnown RBP eCLIP21.08■□□□□ 0.97
CLK3-210ENST00000563112 DLGAP5Q15398 846 aa21.08■□□□□ 0.97
CLK3-210ENST00000563112 RGMBQ6NW40 437 aa21.08■□□□□ 0.97
CLK3-210ENST00000563112 VPS37DQ86XT2 251 aa21.08■□□□□ 0.97
CLK3-210ENST00000563112 PRDM10Q9NQV6 1147 aa21.08■□□□□ 0.97
CLK3-210ENST00000563112 PDE8BO95263 885 aa21.07■□□□□ 0.96
CLK3-210ENST00000563112 FKBP1BP68106 108 aa21.07■□□□□ 0.96
CLK3-210ENST00000563112 NOGQ13253 232 aa21.07■□□□□ 0.96
CLK3-210ENST00000563112 CAVIN4Q5BKX8 364 aa21.07■□□□□ 0.96
CLK3-210ENST00000563112 CERS5Q8N5B7 392 aa21.07■□□□□ 0.96
CLK3-210ENST00000563112 TDRD7Q8NHU6 1098 aaKnown RBP21.07■□□□□ 0.96
CLK3-210ENST00000563112 CCDC102AQ96A19 550 aa21.07■□□□□ 0.96
CLK3-210ENST00000563112 FAM84BQ96KN1 310 aaPredicted RBP21.07■□□□□ 0.96
CLK3-210ENST00000563112 THSD7BQ9C0I4 1608 aa21.07■□□□□ 0.96
CLK3-210ENST00000563112 FAM205AQ6ZU69 1335 aa21.06■□□□□ 0.96
CLK3-210ENST00000563112 F8W031 263 aaPredicted RBP21.06■□□□□ 0.96
CLK3-210ENST00000563112 NF2P35240 595 aa21.06■□□□□ 0.96
CLK3-210ENST00000563112 APOBEC3FQ8IUX4 373 aaKnown RBP21.06■□□□□ 0.96
CLK3-210ENST00000563112 KLHDC4Q8TBB5 520 aa21.06■□□□□ 0.96
CLK3-210ENST00000563112 JAG2Q9Y219 1238 aa21.06■□□□□ 0.96
CLK3-210ENST00000563112 EYA2O00167 538 aa21.05■□□□□ 0.96
CLK3-210ENST00000563112 ZNF157P51786 506 aaPredicted RBP21.05■□□□□ 0.96
CLK3-210ENST00000563112 LBX1P52954 281 aa21.05■□□□□ 0.96
CLK3-210ENST00000563112 ZBED3Q96IU2 234 aaPredicted RBP21.05■□□□□ 0.96
CLK3-210ENST00000563112 MYO1BO43795 1136 aa21.04■□□□□ 0.96
CLK3-210ENST00000563112 FRAT2O75474 233 aaPredicted RBP21.04■□□□□ 0.96
CLK3-210ENST00000563112 IFIT1P09914 478 aaKnown RBP21.04■□□□□ 0.96
CLK3-210ENST00000563112 MTMR14Q8NCE2 650 aa21.04■□□□□ 0.96
CLK3-210ENST00000563112 SCAF8Q9UPN6 1271 aaKnown RBP21.04■□□□□ 0.96
CLK3-210ENST00000563112 CA12O43570 354 aa21.03■□□□□ 0.96
CLK3-210ENST00000563112 HSPA8P11142 646 aaKnown RBP21.03■□□□□ 0.96
CLK3-210ENST00000563112 RFX5P48382 616 aaPredicted RBP21.03■□□□□ 0.96
CLK3-210ENST00000563112 PTPN12Q05209 780 aaKnown RBP21.03■□□□□ 0.96
CLK3-210ENST00000563112 PUM3Q15397 648 aaKnown RBP21.03■□□□□ 0.96
CLK3-210ENST00000563112 MFSD14BQ5SR56 506 aa21.03■□□□□ 0.96
CLK3-210ENST00000563112 INTS3Q68E01 1043 aaKnown RBP21.03■□□□□ 0.96
CLK3-210ENST00000563112 FBXO33Q7Z6M2 555 aa21.03■□□□□ 0.96
CLK3-210ENST00000563112 VGLL2Q8N8G2 317 aa21.03■□□□□ 0.96
CLK3-210ENST00000563112 FBXO3Q9UK99 471 aa21.03■□□□□ 0.96
CLK3-210ENST00000563112 LRRFIP2Q9Y608 721 aaKnown RBP21.03■□□□□ 0.96
CLK3-210ENST00000563112 GNAI3P08754 354 aa21.02■□□□□ 0.96
CLK3-210ENST00000563112 RBM5P52756 815 aaKnown RBP eCLIP21.02■□□□□ 0.96
CLK3-210ENST00000563112 TTLL12Q14166 644 aaPredicted RBP21.02■□□□□ 0.96
CLK3-210ENST00000563112 CFAP100Q494V2 611 aa21.02■□□□□ 0.96
CLK3-210ENST00000563112 PRAMEF18Q5VWM3 479 aa21.02■□□□□ 0.96
CLK3-210ENST00000563112 FRAT1Q92837 279 aaPredicted RBP21.02■□□□□ 0.96
CLK3-210ENST00000563112 BCAR3O75815 825 aa21■□□□□ 0.95
CLK3-210ENST00000563112 SLC5A1P13866 664 aa21■□□□□ 0.95
CLK3-210ENST00000563112 ATF7IPQ6VMQ6 1270 aa21■□□□□ 0.95
CLK3-210ENST00000563112 TBC1D22AQ8WUA7 517 aa21■□□□□ 0.95
CLK3-210ENST00000563112 MEIS3Q99687 375 aa21■□□□□ 0.95
CLK3-210ENST00000563112 TTF2Q9UNY4 1162 aaKnown RBP21■□□□□ 0.95
CLK3-210ENST00000563112 IQSEC3Q9UPP2 1182 aaPredicted RBP21■□□□□ 0.95
CLK3-210ENST00000563112 PAPPA2Q9BXP8 1791 aa21■□□□□ 0.95
CLK3-210ENST00000563112 SPDYE2BA6NHP3 402 aa20.99■□□□□ 0.95
CLK3-210ENST00000563112 FAM155AB1AL88 458 aaPredicted RBP20.99■□□□□ 0.95
CLK3-210ENST00000563112 CIAO1O76071 339 aa20.99■□□□□ 0.95
CLK3-210ENST00000563112 SPDYE6P0CI01 402 aa20.99■□□□□ 0.95
CLK3-210ENST00000563112 CHAF1AQ13111 956 aaPredicted RBP20.99■□□□□ 0.95
CLK3-210ENST00000563112 LPIN2Q92539 896 aa20.99■□□□□ 0.95
CLK3-210ENST00000563112 PRMT6Q96LA8 375 aaPredicted RBP20.99■□□□□ 0.95
CLK3-210ENST00000563112 SIL1Q9H173 461 aa20.99■□□□□ 0.95
CLK3-210ENST00000563112 CEP126Q9P2H0 1117 aa20.99■□□□□ 0.95
CLK3-210ENST00000563112 UBE2Q2LH0YL09 131 aa20.98■□□□□ 0.95
CLK3-210ENST00000563112 SLC10A3P09131 477 aa20.98■□□□□ 0.95
CLK3-210ENST00000563112 TRIM27P14373 513 aa20.98■□□□□ 0.95
CLK3-210ENST00000563112 FGFR2P21802 821 aa20.98■□□□□ 0.95
CLK3-210ENST00000563112 BCAMP50895 628 aa20.98■□□□□ 0.95
CLK3-210ENST00000563112 KIF23Q02241 960 aaPredicted RBP20.98■□□□□ 0.95
CLK3-210ENST00000563112 ATG9AQ7Z3C6 839 aa20.98■□□□□ 0.95
CLK3-210ENST00000563112 ARMC9Q7Z3E5 817 aa20.98■□□□□ 0.95
CLK3-210ENST00000563112 ZIC5Q96T25 663 aa20.98■□□□□ 0.95
CLK3-210ENST00000563112 DEFB129Q9H1M3 183 aa20.98■□□□□ 0.95
CLK3-210ENST00000563112 SERPINA10Q9UK55 444 aa20.98■□□□□ 0.95
CLK3-210ENST00000563112 PPP2R3BQ9Y5P8 575 aa20.98■□□□□ 0.95
CLK3-210ENST00000563112 COL1A1P02452 1464 aaPredicted RBP20.98■□□□□ 0.95
CLK3-210ENST00000563112 IL15P40933 162 aaPredicted RBP20.97■□□□□ 0.95
CLK3-210ENST00000563112 ZKSCAN2Q63HK3 967 aa20.97■□□□□ 0.95
CLK3-210ENST00000563112 MOB2Q70IA6 237 aa20.97■□□□□ 0.95
CLK3-210ENST00000563112 VEZTQ9HBM0 779 aa20.97■□□□□ 0.95
CLK3-210ENST00000563112 PCDHAC2Q9Y5I4 1007 aa20.97■□□□□ 0.95
CLK3-210ENST00000563112 CLRN2A0PK11 232 aa20.96■□□□□ 0.95
CLK3-210ENST00000563112 REM2Q8IYK8 340 aaPredicted RBP20.96■□□□□ 0.95
CLK3-210ENST00000563112 ECM29Q5VYK3 1845 aa20.96■□□□□ 0.95
CLK3-210ENST00000563112 ATP2B3Q16720 1220 aa20.95■□□□□ 0.94
CLK3-210ENST00000563112 RASAL3Q86YV0 1011 aa20.95■□□□□ 0.94
CLK3-210ENST00000563112 CLUAP1Q96AJ1 413 aa20.95■□□□□ 0.94
CLK3-210ENST00000563112 COPRSQ9NQ92 184 aa20.95■□□□□ 0.94
CLK3-210ENST00000563112 GNL3LQ9NVN8 582 aaKnown RBP20.95■□□□□ 0.94
CLK3-210ENST00000563112 TSKSQ9UJT2 592 aa20.95■□□□□ 0.94
CLK3-210ENST00000563112 CRKP46108 304 aa20.94■□□□□ 0.94
CLK3-210ENST00000563112 HDLBPQ00341 1268 aaKnown RBP20.94■□□□□ 0.94
CLK3-210ENST00000563112 TNFAIP1Q13829 316 aa20.94■□□□□ 0.94
CLK3-210ENST00000563112 PRKG1Q13976 671 aa20.94■□□□□ 0.94
CLK3-210ENST00000563112 SUPT20HL1Q3ZLR7 823 aa20.94■□□□□ 0.94
CLK3-210ENST00000563112 PA2G4Q9UQ80 394 aaKnown RBP20.94■□□□□ 0.94
CLK3-210ENST00000563112 ZBED9Q6R2W3 1325 aa20.94■□□□□ 0.94
CLK3-210ENST00000563112 SRGAP3O43295 1099 aa20.93■□□□□ 0.94
CLK3-210ENST00000563112 PPP1R12BO60237 982 aaPredicted RBP20.93■□□□□ 0.94
CLK3-210ENST00000563112 CAPN15O75808 1086 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms