RNA–Protein interactions for RNA: ENST00000560236.1

LRRC28-218, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 703 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-218ENST00000560236 AAMPQ13685 434 aa7.16□□□□□ -1.26
LRRC28-218ENST00000560236 IKBKEQ14164 716 aa7.16□□□□□ -1.26
LRRC28-218ENST00000560236 SHKBP1Q8TBC3 707 aa7.16□□□□□ -1.26
LRRC28-218ENST00000560236 BSNDQ8WZ55 320 aa7.16□□□□□ -1.26
LRRC28-218ENST00000560236 NXPE3Q969Y0 559 aa7.16□□□□□ -1.26
LRRC28-218ENST00000560236 OSMRQ99650 979 aa7.16□□□□□ -1.26
LRRC28-218ENST00000560236 POLIQ9UNA4 740 aa7.16□□□□□ -1.26
LRRC28-218ENST00000560236 PHACTR2O75167 634 aa7.15□□□□□ -1.26
LRRC28-218ENST00000560236 SPINK2P20155 84 aa7.15□□□□□ -1.26
LRRC28-218ENST00000560236 MTMR3Q13615 1198 aa7.15□□□□□ -1.26
LRRC28-218ENST00000560236 HGSNATQ68CP4 663 aa7.15□□□□□ -1.26
LRRC28-218ENST00000560236 ZKSCAN3Q9BRR0 538 aa7.15□□□□□ -1.26
LRRC28-218ENST00000560236 MEGF11A6BM72 1044 aa7.14□□□□□ -1.27
LRRC28-218ENST00000560236 ARID3CA6NKF2 412 aa7.14□□□□□ -1.27
LRRC28-218ENST00000560236 EREGO14944 169 aa7.14□□□□□ -1.27
LRRC28-218ENST00000560236 TNFRSF21O75509 655 aa7.14□□□□□ -1.27
LRRC28-218ENST00000560236 EDN3P14138 238 aa7.14□□□□□ -1.27
LRRC28-218ENST00000560236 NUTM2GQ5VZR2 741 aa7.14□□□□□ -1.27
LRRC28-218ENST00000560236 VN1R5Q7Z5H4 357 aa7.14□□□□□ -1.27
LRRC28-218ENST00000560236 DTX1Q86Y01 620 aa7.14□□□□□ -1.27
LRRC28-218ENST00000560236 USP26Q9BXU7 913 aa7.14□□□□□ -1.27
LRRC28-218ENST00000560236 GOLGA2P5Q9HBQ8 144 aa7.14□□□□□ -1.27
LRRC28-218ENST00000560236 WDR64B1ANS9 1081 aa7.13□□□□□ -1.27
LRRC28-218ENST00000560236 SOX1O00570 391 aaPredicted RBP7.13□□□□□ -1.27
LRRC28-218ENST00000560236 ADAMTS4O75173 837 aa7.13□□□□□ -1.27
LRRC28-218ENST00000560236 MAP4P27816 1152 aaKnown RBP7.13□□□□□ -1.27
LRRC28-218ENST00000560236 SSFA2P28290 1259 aa7.13□□□□□ -1.27
LRRC28-218ENST00000560236 USP5P45974 858 aa7.13□□□□□ -1.27
LRRC28-218ENST00000560236 C12orf50Q8NA57 414 aaPredicted RBP7.13□□□□□ -1.27
LRRC28-218ENST00000560236 ASAP3Q8TDY4 903 aa7.13□□□□□ -1.27
LRRC28-218ENST00000560236 SNX29Q8TEQ0 813 aa7.13□□□□□ -1.27
LRRC28-218ENST00000560236 EHHADHQ08426 723 aa7.12□□□□□ -1.27
LRRC28-218ENST00000560236 SGO2Q562F6 1265 aa7.12□□□□□ -1.27
LRRC28-218ENST00000560236 MFSD14AQ96MC6 490 aa7.12□□□□□ -1.27
LRRC28-218ENST00000560236 LOC100289279A0A1B0GTE1 492 aa7.11□□□□□ -1.27
LRRC28-218ENST00000560236 TMEM88BA6NKF7 163 aa7.11□□□□□ -1.27
LRRC28-218ENST00000560236 FAM13AO94988 1023 aa7.11□□□□□ -1.27
LRRC28-218ENST00000560236 WNT11O96014 354 aa7.11□□□□□ -1.27
LRRC28-218ENST00000560236 TAL1P17542 331 aaPredicted RBP7.11□□□□□ -1.27
LRRC28-218ENST00000560236 RXRBP28702 533 aa7.11□□□□□ -1.27
LRRC28-218ENST00000560236 SMG8Q8ND04 991 aaKnown RBP7.11□□□□□ -1.27
LRRC28-218ENST00000560236 GIMAP7Q8NHV1 300 aa7.11□□□□□ -1.27
LRRC28-218ENST00000560236 TMPRSS13Q9BYE2 586 aa7.11□□□□□ -1.27
LRRC28-218ENST00000560236 BHLHE41Q9C0J9 482 aaPredicted RBP7.11□□□□□ -1.27
LRRC28-218ENST00000560236 SOX17Q9H6I2 414 aaPredicted RBP7.11□□□□□ -1.27
LRRC28-218ENST00000560236 SUGCTQ9HAC7 445 aa7.11□□□□□ -1.27
LRRC28-218ENST00000560236 CYP4F12Q9HCS2 524 aa7.11□□□□□ -1.27
LRRC28-218ENST00000560236 FOXD3Q9UJU5 478 aaPredicted RBP7.11□□□□□ -1.27
LRRC28-218ENST00000560236 MTMR7Q9Y216 660 aa7.11□□□□□ -1.27
LRRC28-218ENST00000560236 NPR3P17342 541 aa7.1□□□□□ -1.27
LRRC28-218ENST00000560236 TXKP42681 527 aa7.1□□□□□ -1.27
LRRC28-218ENST00000560236 KRTAP19-1Q8IUB9 90 aa7.1□□□□□ -1.27
LRRC28-218ENST00000560236 ATG3Q9NT62 314 aa7.1□□□□□ -1.27
LRRC28-218ENST00000560236 PIM2Q9P1W9 311 aa7.1□□□□□ -1.27
LRRC28-218ENST00000560236 TIAF1O95411 115 aa7.09□□□□□ -1.27
LRRC28-218ENST00000560236 GSTM4Q03013 218 aa7.09□□□□□ -1.27
LRRC28-218ENST00000560236 FBXL6Q8N531 539 aa7.09□□□□□ -1.27
LRRC28-218ENST00000560236 LATS2Q9NRM7 1088 aa7.09□□□□□ -1.27
LRRC28-218ENST00000560236 AMOTL2Q9Y2J4 779 aa7.09□□□□□ -1.27
LRRC28-218ENST00000560236 LEMD3Q9Y2U8 911 aa7.09□□□□□ -1.27
LRRC28-218ENST00000560236 FZD6O60353 706 aa7.08□□□□□ -1.28
LRRC28-218ENST00000560236 PPP1R15AO75807 674 aaPredicted RBP7.08□□□□□ -1.28
LRRC28-218ENST00000560236 DLGAP3O95886 979 aa7.08□□□□□ -1.28
LRRC28-218ENST00000560236 ESRRAP11474 423 aaPredicted RBP7.08□□□□□ -1.28
LRRC28-218ENST00000560236 DRD2P14416 443 aa7.08□□□□□ -1.28
LRRC28-218ENST00000560236 HOXA10P31260 410 aaPredicted RBP7.08□□□□□ -1.28
LRRC28-218ENST00000560236 USP11P51784 963 aa7.08□□□□□ -1.28
LRRC28-218ENST00000560236 SF3B2Q13435 895 aaKnown RBP7.08□□□□□ -1.28
LRRC28-218ENST00000560236 EXOSC6Q5RKV6 272 aaKnown RBP7.08□□□□□ -1.28
LRRC28-218ENST00000560236 PEAR1Q5VY43 1037 aaPredicted RBP7.08□□□□□ -1.28
LRRC28-218ENST00000560236 FMNL2Q96PY5 1086 aa7.08□□□□□ -1.28
LRRC28-218ENST00000560236 FAM95CA0A1B0GW59 222 aa7.07□□□□□ -1.28
LRRC28-218ENST00000560236 EIF4EBP3O60516 100 aaPredicted RBP7.07□□□□□ -1.28
LRRC28-218ENST00000560236 FKBP4Q02790 459 aaKnown RBP eCLIP7.07□□□□□ -1.28
LRRC28-218ENST00000560236 NFKBIBQ15653 356 aa7.07□□□□□ -1.28
LRRC28-218ENST00000560236 PAOXQ6QHF9 649 aa7.07□□□□□ -1.28
LRRC28-218ENST00000560236 CCDC82Q8N4S0 544 aa7.07□□□□□ -1.28
LRRC28-218ENST00000560236 OSBPL1AQ9BXW6 950 aa7.07□□□□□ -1.28
LRRC28-218ENST00000560236 ZFYVE28Q9HCC9 887 aa7.07□□□□□ -1.28
LRRC28-218ENST00000560236 METTL12A8MUP2 240 aa7.06□□□□□ -1.28
LRRC28-218ENST00000560236 ABL1P00519 1130 aa7.06□□□□□ -1.28
LRRC28-218ENST00000560236 F13BP05160 661 aa7.06□□□□□ -1.28
LRRC28-218ENST00000560236 GJD3Q8N144 294 aa7.06□□□□□ -1.28
LRRC28-218ENST00000560236 FBLIM1Q8WUP2 373 aa7.06□□□□□ -1.28
LRRC28-218ENST00000560236 CCDC87Q9NVE4 849 aa7.06□□□□□ -1.28
LRRC28-218ENST00000560236 BTBD11A6QL63 1104 aa7.05□□□□□ -1.28
LRRC28-218ENST00000560236 POLR3DP05423 398 aaPredicted RBP7.05□□□□□ -1.28
LRRC28-218ENST00000560236 FOSL1P15407 271 aa7.05□□□□□ -1.28
LRRC28-218ENST00000560236 SOX4Q06945 474 aaPredicted RBP7.05□□□□□ -1.28
LRRC28-218ENST00000560236 CPSF6Q16630 551 aaKnown RBP eCLIP7.05□□□□□ -1.28
LRRC28-218ENST00000560236 PHLDB3Q6NSJ2 640 aa7.05□□□□□ -1.28
LRRC28-218ENST00000560236 C2CD4AQ8NCU7 369 aaPredicted RBP7.05□□□□□ -1.28
LRRC28-218ENST00000560236 ANO2Q9NQ90 1003 aa7.05□□□□□ -1.28
LRRC28-218ENST00000560236 ANGEL1Q9UNK9 670 aaKnown RBP7.05□□□□□ -1.28
LRRC28-218ENST00000560236 RNF114Q9Y508 228 aa7.05□□□□□ -1.28
LRRC28-218ENST00000560236 ZNF211Q13398 564 aaPredicted RBP7.04□□□□□ -1.28
LRRC28-218ENST00000560236 CDPF1Q6NVV7 123 aa7.04□□□□□ -1.28
LRRC28-218ENST00000560236 METTL22Q9BUU2 404 aaPredicted RBP7.04□□□□□ -1.28
LRRC28-218ENST00000560236 YIPF2Q9BWQ6 316 aa7.04□□□□□ -1.28
LRRC28-218ENST00000560236 A0A096LPE4 126 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms