RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 CWC15Q9P013 229 aaKnown RBP6.18□□□□□ -1.42
USP28-213ENST00000544967 ZKSCAN7Q9P0L1 754 aaPredicted RBP6.18□□□□□ -1.42
USP28-213ENST00000544967 ECM29Q5VYK3 1845 aa6.18□□□□□ -1.42
USP28-213ENST00000544967 SLX4Q8IY92 1834 aa6.18□□□□□ -1.42
USP28-213ENST00000544967 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.18□□□□□ -1.42
USP28-213ENST00000544967 GSPT1P15170 499 aaKnown RBP6.18□□□□□ -1.42
USP28-213ENST00000544967 H2AFXP16104 143 aaPredicted RBP6.18□□□□□ -1.42
USP28-213ENST00000544967 CASP7P55210 303 aa6.18□□□□□ -1.42
USP28-213ENST00000544967 TPM4P67936 248 aa6.18□□□□□ -1.42
USP28-213ENST00000544967 CCDC30Q5VVM6 783 aa6.18□□□□□ -1.42
USP28-213ENST00000544967 GIGYF2Q6Y7W6 1299 aaKnown RBP6.18□□□□□ -1.42
USP28-213ENST00000544967 PLCD3Q8N3E9 789 aa6.18□□□□□ -1.42
USP28-213ENST00000544967 CEP120Q8N960 986 aa6.18□□□□□ -1.42
USP28-213ENST00000544967 RBM42Q9BTD8 480 aaKnown RBP6.18□□□□□ -1.42
USP28-213ENST00000544967 UBXN6Q9BZV1 441 aa6.18□□□□□ -1.42
USP28-213ENST00000544967 TTC12Q9H892 705 aaPredicted RBP6.18□□□□□ -1.42
USP28-213ENST00000544967 NOB1Q9ULX3 412 aaKnown RBP6.18□□□□□ -1.42
USP28-213ENST00000544967 CD2APQ9Y5K6 639 aa6.18□□□□□ -1.42
USP28-213ENST00000544967 WDR90Q96KV7 1748 aa6.18□□□□□ -1.42
USP28-213ENST00000544967 MAST2Q6P0Q8 1798 aa6.18□□□□□ -1.42
USP28-213ENST00000544967 ERC2O15083 957 aa6.18□□□□□ -1.42
USP28-213ENST00000544967 MAP4K4O95819 1239 aaPredicted RBP6.18□□□□□ -1.42
USP28-213ENST00000544967 TWISTNBQ3B726 338 aaPredicted RBP6.18□□□□□ -1.42
USP28-213ENST00000544967 NLGN1Q8N2Q7 840 aa6.18□□□□□ -1.42
USP28-213ENST00000544967 KIAA1522Q9P206 1035 aaPredicted RBP6.18□□□□□ -1.42
USP28-213ENST00000544967 NSFL1CQ9UNZ2 370 aaKnown RBP6.18□□□□□ -1.42
USP28-213ENST00000544967 GNPATO15228 680 aa6.17□□□□□ -1.42
USP28-213ENST00000544967 TPM1P09493 284 aa6.17□□□□□ -1.42
USP28-213ENST00000544967 NOP2P46087 812 aaKnown RBP6.17□□□□□ -1.42
USP28-213ENST00000544967 PROSER3Q2NL68 480 aa6.17□□□□□ -1.42
USP28-213ENST00000544967 TRAPPC3LQ5T215 181 aa6.17□□□□□ -1.42
USP28-213ENST00000544967 TSHZ1Q6ZSZ6 1077 aa6.17□□□□□ -1.42
USP28-213ENST00000544967 POTEDQ86YR6 584 aa6.17□□□□□ -1.42
USP28-213ENST00000544967 FAM200AQ8TCP9 573 aa6.17□□□□□ -1.42
USP28-213ENST00000544967 RASSF4Q9H2L5 321 aa6.17□□□□□ -1.42
USP28-213ENST00000544967 DOCK2Q92608 1830 aa6.17□□□□□ -1.42
USP28-213ENST00000544967 UBN2Q6ZU65 1347 aa6.17□□□□□ -1.42
USP28-213ENST00000544967 EXOSC9Q06265 439 aaKnown RBP6.17□□□□□ -1.42
USP28-213ENST00000544967 DDR1Q08345 913 aa6.17□□□□□ -1.42
USP28-213ENST00000544967 PKP1Q13835 747 aa6.17□□□□□ -1.42
USP28-213ENST00000544967 ANKRD45Q5TZF3 282 aa6.17□□□□□ -1.42
USP28-213ENST00000544967 GIMAP6Q6P9H5 292 aa6.17□□□□□ -1.42
USP28-213ENST00000544967 SARM1Q6SZW1 724 aa6.17□□□□□ -1.42
USP28-213ENST00000544967 RBM43Q6ZSC3 357 aaKnown RBP6.17□□□□□ -1.42
USP28-213ENST00000544967 NYAP1Q6ZVC0 841 aa6.17□□□□□ -1.42
USP28-213ENST00000544967 RPAP2Q8IXW5 612 aaPredicted RBP6.17□□□□□ -1.42
USP28-213ENST00000544967 TMX3Q96JJ7 454 aa6.17□□□□□ -1.42
USP28-213ENST00000544967 NOL10Q9BSC4 688 aaKnown RBP6.17□□□□□ -1.42
USP28-213ENST00000544967 API5Q9BZZ5 524 aaKnown RBP6.17□□□□□ -1.42
USP28-213ENST00000544967 L2HGDHQ9H9P8 463 aa6.17□□□□□ -1.42
USP28-213ENST00000544967 PYCARDQ9ULZ3 195 aa6.17□□□□□ -1.42
USP28-213ENST00000544967 AOX1Q06278 1338 aa6.16□□□□□ -1.42
USP28-213ENST00000544967 NTSR2O95665 410 aa6.16□□□□□ -1.42
USP28-213ENST00000544967 CCDC192P0DO97 292 aa6.16□□□□□ -1.42
USP28-213ENST00000544967 GPS2Q13227 327 aa6.16□□□□□ -1.42
USP28-213ENST00000544967 PLA2G4DQ86XP0 818 aa6.16□□□□□ -1.42
USP28-213ENST00000544967 SYTL4Q96C24 671 aaPredicted RBP6.16□□□□□ -1.42
USP28-213ENST00000544967 RPS6KA5O75582 802 aa6.16□□□□□ -1.42
USP28-213ENST00000544967 A1BGP04217 495 aa6.16□□□□□ -1.42
USP28-213ENST00000544967 MYBPC2Q14324 1141 aa6.16□□□□□ -1.42
USP28-213ENST00000544967 KRT24Q2M2I5 525 aa6.16□□□□□ -1.42
USP28-213ENST00000544967 PARP10Q53GL7 1025 aa6.16□□□□□ -1.42
USP28-213ENST00000544967 HSP90AB3PQ58FF7 597 aa6.16□□□□□ -1.42
USP28-213ENST00000544967 ZGPATQ8N5A5 531 aaKnown RBP6.16□□□□□ -1.42
USP28-213ENST00000544967 RNF214Q8ND24 703 aa6.16□□□□□ -1.42
USP28-213ENST00000544967 TDRD7Q8NHU6 1098 aaKnown RBP6.16□□□□□ -1.42
USP28-213ENST00000544967 TSR2Q969E8 191 aaKnown RBP6.16□□□□□ -1.42
USP28-213ENST00000544967 MIS18AQ9NYP9 233 aa6.16□□□□□ -1.42
USP28-213ENST00000544967 CHPF2Q9P2E5 772 aa6.16□□□□□ -1.42
USP28-213ENST00000544967 TNNT1P13805 278 aa6.16□□□□□ -1.42
USP28-213ENST00000544967 PSEN1P49768 467 aa6.16□□□□□ -1.42
USP28-213ENST00000544967 RAD51AP2Q09MP3 1159 aa6.16□□□□□ -1.42
USP28-213ENST00000544967 GOLGA6L1Q8N7Z2 621 aa6.16□□□□□ -1.42
USP28-213ENST00000544967 SPOCK2Q92563 424 aa6.16□□□□□ -1.42
USP28-213ENST00000544967 TSC1Q92574 1164 aa6.16□□□□□ -1.42
USP28-213ENST00000544967 NCAPGQ9BPX3 1015 aa6.16□□□□□ -1.42
USP28-213ENST00000544967 TACO1Q9BSH4 297 aaKnown RBP6.16□□□□□ -1.42
USP28-213ENST00000544967 SRRTQ9BXP5 876 aaKnown RBP6.16□□□□□ -1.42
USP28-213ENST00000544967 FAM117AQ9C073 453 aa6.16□□□□□ -1.42
USP28-213ENST00000544967 CCDC88AQ3V6T2 1871 aa6.16□□□□□ -1.42
USP28-213ENST00000544967 PAPPA2Q9BXP8 1791 aa6.15□□□□□ -1.42
USP28-213ENST00000544967 PTCD1O75127 700 aaKnown RBP6.15□□□□□ -1.42
USP28-213ENST00000544967 HOXA10P31260 410 aaPredicted RBP6.15□□□□□ -1.42
USP28-213ENST00000544967 KMT5BQ4FZB7 885 aa6.15□□□□□ -1.42
USP28-213ENST00000544967 HDGFL1Q5TGJ6 251 aa6.15□□□□□ -1.42
USP28-213ENST00000544967 MYCBPQ99417 103 aaPredicted RBP6.15□□□□□ -1.42
USP28-213ENST00000544967 MTA3Q9BTC8 594 aa6.15□□□□□ -1.42
USP28-213ENST00000544967 METTL22Q9BUU2 404 aaPredicted RBP6.15□□□□□ -1.42
USP28-213ENST00000544967 HDAC5Q9UQL6 1122 aa6.15□□□□□ -1.42
USP28-213ENST00000544967 MYH13Q9UKX3 1938 aa6.15□□□□□ -1.42
USP28-213ENST00000544967 SLU7O95391 586 aaKnown RBP6.15□□□□□ -1.43
USP28-213ENST00000544967 CASQ1P31415 396 aa6.15□□□□□ -1.43
USP28-213ENST00000544967 TGFB2P61812 414 aa6.15□□□□□ -1.43
USP28-213ENST00000544967 TCIRG1Q13488 830 aa6.15□□□□□ -1.43
USP28-213ENST00000544967 ICE2Q659A1 982 aa6.15□□□□□ -1.43
USP28-213ENST00000544967 KSR2Q6VAB6 950 aa6.15□□□□□ -1.43
USP28-213ENST00000544967 USP48Q86UV5 1035 aa6.15□□□□□ -1.43
USP28-213ENST00000544967 PDGFDQ9GZP0 370 aaPredicted RBP6.15□□□□□ -1.43
USP28-213ENST00000544967 KDM4CQ9H3R0 1056 aa6.15□□□□□ -1.43
USP28-213ENST00000544967 ABCC12Q96J65 1359 aa6.15□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms