RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 UTP14AQ9BVJ6 771 aaKnown RBP11.62□□□□□ -0.55
SS18-205ENST00000542420 TBC1D2BQ9UPU7 963 aa11.62□□□□□ -0.55
SS18-205ENST00000542420 FIBPO43427 364 aa11.61□□□□□ -0.55
SS18-205ENST00000542420 CAVIN2O95810 425 aa11.61□□□□□ -0.55
SS18-205ENST00000542420 ZAP70P43403 619 aa11.61□□□□□ -0.55
SS18-205ENST00000542420 SCRN1Q12765 414 aa11.61□□□□□ -0.55
SS18-205ENST00000542420 NCOA7Q8NI08 942 aa11.61□□□□□ -0.55
SS18-205ENST00000542420 CCDC39Q9UFE4 941 aa11.61□□□□□ -0.55
SS18-205ENST00000542420 LOC102724428A0A0B4J2F2 783 aa11.61□□□□□ -0.55
SS18-205ENST00000542420 CAMTA2O94983 1202 aa11.61□□□□□ -0.55
SS18-205ENST00000542420 SIK1P57059 783 aa11.61□□□□□ -0.55
SS18-205ENST00000542420 FKBP4Q02790 459 aaKnown RBP eCLIP11.61□□□□□ -0.55
SS18-205ENST00000542420 CCDC152Q4G0S7 254 aa11.61□□□□□ -0.55
SS18-205ENST00000542420 RBM43Q6ZSC3 357 aaKnown RBP11.61□□□□□ -0.55
SS18-205ENST00000542420 MB21D2Q8IYB1 491 aaPredicted RBP11.61□□□□□ -0.55
SS18-205ENST00000542420 CDC5LQ99459 802 aaKnown RBP11.61□□□□□ -0.55
SS18-205ENST00000542420 LARP6Q9BRS8 491 aaKnown RBP11.61□□□□□ -0.55
SS18-205ENST00000542420 ZNF330Q9Y3S2 320 aaPredicted RBP11.61□□□□□ -0.55
SS18-205ENST00000542420 NDUFB9Q9Y6M9 179 aa11.61□□□□□ -0.55
SS18-205ENST00000542420 THSD7AQ9UPZ6 1657 aa11.61□□□□□ -0.55
SS18-205ENST00000542420 MYH13Q9UKX3 1938 aa11.6□□□□□ -0.55
SS18-205ENST00000542420 MAST2Q6P0Q8 1798 aa11.6□□□□□ -0.55
SS18-205ENST00000542420 NPM3O75607 178 aaKnown RBP11.6□□□□□ -0.55
SS18-205ENST00000542420 GPTP24298 496 aa11.6□□□□□ -0.55
SS18-205ENST00000542420 MCAMP43121 646 aa11.6□□□□□ -0.55
SS18-205ENST00000542420 CRKLP46109 303 aaKnown RBP11.6□□□□□ -0.55
SS18-205ENST00000542420 TTC6Q86TZ1 520 aa11.6□□□□□ -0.55
SS18-205ENST00000542420 CHAMP1Q96JM3 812 aa11.6□□□□□ -0.55
SS18-205ENST00000542420 GDPD2Q9HCC8 539 aa11.6□□□□□ -0.55
SS18-205ENST00000542420 NOL7Q9UMY1 257 aaKnown RBP11.6□□□□□ -0.55
SS18-205ENST00000542420 NID2Q14112 1375 aa11.6□□□□□ -0.55
SS18-205ENST00000542420 GPAA1O43292 621 aa11.6□□□□□ -0.55
SS18-205ENST00000542420 WASHC4Q2M389 1173 aa11.6□□□□□ -0.55
SS18-205ENST00000542420 ZNF396Q96N95 335 aaPredicted RBP11.6□□□□□ -0.55
SS18-205ENST00000542420 ECM29Q5VYK3 1845 aa11.6□□□□□ -0.55
SS18-205ENST00000542420 LY75O60449 1722 aa11.6□□□□□ -0.55
SS18-205ENST00000542420 BCL9LQ86UU0 1499 aa11.59□□□□□ -0.55
SS18-205ENST00000542420 CNTNAP4Q9C0A0 1308 aa11.59□□□□□ -0.55
SS18-205ENST00000542420 H3BQV1 296 aa11.59□□□□□ -0.55
SS18-205ENST00000542420 FOXP2O15409 715 aa11.59□□□□□ -0.55
SS18-205ENST00000542420 GNAT2P19087 354 aa11.59□□□□□ -0.55
SS18-205ENST00000542420 PDIA3P30101 505 aaKnown RBP11.59□□□□□ -0.55
SS18-205ENST00000542420 IFFO2Q5TF58 517 aa11.59□□□□□ -0.55
SS18-205ENST00000542420 CCDC102BQ68D86 513 aa11.59□□□□□ -0.55
SS18-205ENST00000542420 LEO1Q8WVC0 666 aaPredicted RBP11.59□□□□□ -0.55
SS18-205ENST00000542420 SPATA32Q96LK8 384 aa11.59□□□□□ -0.55
SS18-205ENST00000542420 TAF1LQ8IZX4 1826 aa11.59□□□□□ -0.55
SS18-205ENST00000542420 PTPDC1A2A3K4 754 aa11.59□□□□□ -0.55
SS18-205ENST00000542420 ZNF213O14771 459 aa11.59□□□□□ -0.55
SS18-205ENST00000542420 NTSR2O95665 410 aa11.59□□□□□ -0.55
SS18-205ENST00000542420 FGAP02671 866 aa11.59□□□□□ -0.55
SS18-205ENST00000542420 ATP6V1AP38606 617 aa11.59□□□□□ -0.55
SS18-205ENST00000542420 SCARF1Q14162 830 aa11.59□□□□□ -0.55
SS18-205ENST00000542420 MARCH10Q8NA82 808 aaPredicted RBP11.59□□□□□ -0.55
SS18-205ENST00000542420 TCEANC2Q96MN5 208 aa11.59□□□□□ -0.55
SS18-205ENST00000542420 PNPLA7Q6ZV29 1317 aa11.58□□□□□ -0.56
SS18-205ENST00000542420 CTAGE5O15320 804 aa11.58□□□□□ -0.56
SS18-205ENST00000542420 ZNF500O60304 480 aaPredicted RBP11.58□□□□□ -0.56
SS18-205ENST00000542420 CCDC192P0DO97 292 aa11.58□□□□□ -0.56
SS18-205ENST00000542420 SUSD4Q5VX71 490 aa11.58□□□□□ -0.56
SS18-205ENST00000542420 RALYLQ86SE5 291 aaKnown RBP11.58□□□□□ -0.56
SS18-205ENST00000542420 TMEM87BQ96K49 555 aa11.58□□□□□ -0.56
SS18-205ENST00000542420 RCOR1Q9UKL0 485 aa11.58□□□□□ -0.56
SS18-205ENST00000542420 BTAF1O14981 1849 aa11.58□□□□□ -0.56
SS18-205ENST00000542420 PDS5AQ29RF7 1337 aaKnown RBP11.58□□□□□ -0.56
SS18-205ENST00000542420 DLEC1Q9Y238 1755 aa11.58□□□□□ -0.56
SS18-205ENST00000542420 TCRBV5S4A2TA0A5A2 114 aa11.58□□□□□ -0.56
SS18-205ENST00000542420 GOLGA6L4A6NEF3 574 aa11.58□□□□□ -0.56
SS18-205ENST00000542420 CTDNEP1O95476 244 aa11.58□□□□□ -0.56
SS18-205ENST00000542420 TPM2P07951 284 aa11.58□□□□□ -0.56
SS18-205ENST00000542420 MSNP26038 577 aaKnown RBP11.58□□□□□ -0.56
SS18-205ENST00000542420 IGHMBP2P38935 993 aaKnown RBP11.58□□□□□ -0.56
SS18-205ENST00000542420 RCAN1P53805 252 aa11.58□□□□□ -0.56
SS18-205ENST00000542420 MAP3K12Q12852 859 aa11.58□□□□□ -0.56
SS18-205ENST00000542420 TRDNQ13061 729 aa11.58□□□□□ -0.56
SS18-205ENST00000542420 COL9A3Q14050 684 aaPredicted RBP11.58□□□□□ -0.56
SS18-205ENST00000542420 RC3H1Q5TC82 1133 aaKnown RBP11.58□□□□□ -0.56
SS18-205ENST00000542420 SYTL4Q96C24 671 aaPredicted RBP11.58□□□□□ -0.56
SS18-205ENST00000542420 NUP62CLQ9H1M0 184 aa11.58□□□□□ -0.56
SS18-205ENST00000542420 JAK2O60674 1132 aa11.57□□□□□ -0.56
SS18-205ENST00000542420 TOM1O60784 492 aa11.57□□□□□ -0.56
SS18-205ENST00000542420 TPM3P06753 285 aa11.57□□□□□ -0.56
SS18-205ENST00000542420 APOBRQ0VD83 1088 aa11.57□□□□□ -0.56
SS18-205ENST00000542420 STK3Q13188 491 aa11.57□□□□□ -0.56
SS18-205ENST00000542420 SF3B3Q15393 1217 aaKnown RBP11.57□□□□□ -0.56
SS18-205ENST00000542420 MAP3K11Q16584 847 aa11.57□□□□□ -0.56
SS18-205ENST00000542420 PUS7LQ9H0K6 701 aaKnown RBP11.57□□□□□ -0.56
SS18-205ENST00000542420 CLSTN2Q9H4D0 955 aa11.57□□□□□ -0.56
SS18-205ENST00000542420 CDKL5O76039 1030 aa11.57□□□□□ -0.56
SS18-205ENST00000542420 CHGBP05060 677 aa11.57□□□□□ -0.56
SS18-205ENST00000542420 PDE6AP16499 860 aa11.57□□□□□ -0.56
SS18-205ENST00000542420 TERF1P54274 439 aa11.57□□□□□ -0.56
SS18-205ENST00000542420 VPS72Q15906 364 aa11.57□□□□□ -0.56
SS18-205ENST00000542420 BRAPQ7Z569 592 aa11.57□□□□□ -0.56
SS18-205ENST00000542420 SPATA5Q8NB90 893 aa11.57□□□□□ -0.56
SS18-205ENST00000542420 MPHOSPH8Q99549 860 aa11.57□□□□□ -0.56
SS18-205ENST00000542420 CNNM2Q9H8M5 875 aa11.57□□□□□ -0.56
SS18-205ENST00000542420 ZKSCAN5Q9Y2L8 839 aa11.57□□□□□ -0.56
SS18-205ENST00000542420 CCDC88AQ3V6T2 1871 aa11.56□□□□□ -0.56
SS18-205ENST00000542420 PRC1O43663 620 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms