RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 SPRYD7Q5W111 196 aa17.28■□□□□ 0.36
SS18-204ENST00000539244 DEFB129Q9H1M3 183 aa17.28■□□□□ 0.36
SS18-204ENST00000539244 PPP2R3BQ9Y5P8 575 aa17.28■□□□□ 0.36
SS18-204ENST00000539244 UNCXA6NJT0 531 aa17.27■□□□□ 0.36
SS18-204ENST00000539244 ANGEL1Q9UNK9 670 aaKnown RBP17.27■□□□□ 0.36
SS18-204ENST00000539244 SSC5DA1L4H1 1573 aa17.27■□□□□ 0.35
SS18-204ENST00000539244 ALDH1A1P00352 501 aa17.26■□□□□ 0.35
SS18-204ENST00000539244 EXOSC9Q06265 439 aaKnown RBP17.26■□□□□ 0.35
SS18-204ENST00000539244 MKRN3Q13064 507 aaKnown RBP17.26■□□□□ 0.35
SS18-204ENST00000539244 PRKG1Q13976 671 aa17.26■□□□□ 0.35
SS18-204ENST00000539244 ZNF804AQ7Z570 1209 aa17.26■□□□□ 0.35
SS18-204ENST00000539244 HELBQ8NG08 1087 aaPredicted RBP17.26■□□□□ 0.35
SS18-204ENST00000539244 SPDYE2BA6NHP3 402 aa17.25■□□□□ 0.35
SS18-204ENST00000539244 F6X3S4 739 aa17.25■□□□□ 0.35
SS18-204ENST00000539244 FKTNO75072 461 aa17.25■□□□□ 0.35
SS18-204ENST00000539244 SPDYE6P0CI01 402 aa17.25■□□□□ 0.35
SS18-204ENST00000539244 ZBTB48P10074 688 aaPredicted RBP17.25■□□□□ 0.35
SS18-204ENST00000539244 INHBEP58166 350 aa17.25■□□□□ 0.35
SS18-204ENST00000539244 FBXO46Q6PJ61 603 aaPredicted RBP17.25■□□□□ 0.35
SS18-204ENST00000539244 LMBR1LQ6UX01 489 aa17.25■□□□□ 0.35
SS18-204ENST00000539244 MANSC4A6NHS7 340 aaPredicted RBP17.24■□□□□ 0.35
SS18-204ENST00000539244 GRM8O00222 908 aa17.24■□□□□ 0.35
SS18-204ENST00000539244 MYO1BO43795 1136 aa17.24■□□□□ 0.35
SS18-204ENST00000539244 CFAP100Q494V2 611 aa17.24■□□□□ 0.35
SS18-204ENST00000539244 EPHA10Q5JZY3 1008 aa17.24■□□□□ 0.35
SS18-204ENST00000539244 R3HDMLQ9H3Y0 253 aa17.24■□□□□ 0.35
SS18-204ENST00000539244 MRS2Q9HD23 443 aa17.24■□□□□ 0.35
SS18-204ENST00000539244 PCDHAC2Q9Y5I4 1007 aa17.24■□□□□ 0.35
SS18-204ENST00000539244 PPP1R12BO60237 982 aaPredicted RBP17.23■□□□□ 0.35
SS18-204ENST00000539244 CCDC57Q2TAC2 916 aa17.23■□□□□ 0.35
SS18-204ENST00000539244 SUPT20HL1Q3ZLR7 823 aa17.23■□□□□ 0.35
SS18-204ENST00000539244 LDHAL6AQ6ZMR3 332 aa17.23■□□□□ 0.35
SS18-204ENST00000539244 SLC10A4Q96EP9 437 aa17.23■□□□□ 0.35
SS18-204ENST00000539244 PRMT6Q96LA8 375 aaPredicted RBP17.23■□□□□ 0.35
SS18-204ENST00000539244 FZD1Q9UP38 647 aa17.23■□□□□ 0.35
SS18-204ENST00000539244 CHMP3Q9Y3E7 222 aa17.23■□□□□ 0.35
SS18-204ENST00000539244 FAM205AQ6ZU69 1335 aa17.22■□□□□ 0.35
SS18-204ENST00000539244 F8W031 263 aaPredicted RBP17.22■□□□□ 0.35
SS18-204ENST00000539244 IFNL1Q8IU54 200 aa17.22■□□□□ 0.35
SS18-204ENST00000539244 WNK4Q96J92 1243 aa17.22■□□□□ 0.35
SS18-204ENST00000539244 ZNF594Q96JF6 807 aaPredicted RBP17.22■□□□□ 0.35
SS18-204ENST00000539244 SPINK5Q9NQ38 1064 aaPredicted RBP17.22■□□□□ 0.35
SS18-204ENST00000539244 CLRN2A0PK11 232 aa17.21■□□□□ 0.35
SS18-204ENST00000539244 ALDH1L1O75891 902 aa17.21■□□□□ 0.35
SS18-204ENST00000539244 UBE4AQ14139 1066 aa17.21■□□□□ 0.35
SS18-204ENST00000539244 PRPF38BQ5VTL8 546 aaKnown RBP17.21■□□□□ 0.35
SS18-204ENST00000539244 TDRD7Q8NHU6 1098 aaKnown RBP17.21■□□□□ 0.35
SS18-204ENST00000539244 CLMNQ96JQ2 1002 aa17.21■□□□□ 0.35
SS18-204ENST00000539244 HTTP42858 3142 aa17.21■□□□□ 0.35
SS18-204ENST00000539244 ARAP2Q8WZ64 1704 aa17.21■□□□□ 0.35
SS18-204ENST00000539244 AOX1Q06278 1338 aa17.21■□□□□ 0.34
SS18-204ENST00000539244 TAF7LQ5H9L4 462 aa17.2■□□□□ 0.34
SS18-204ENST00000539244 NBPF12Q5TAG4 269 aaPredicted RBP17.2■□□□□ 0.34
SS18-204ENST00000539244 CNNM1Q9NRU3 951 aa17.2■□□□□ 0.34
SS18-204ENST00000539244 SALL2Q9Y467 1007 aaPredicted RBP17.2■□□□□ 0.34
SS18-204ENST00000539244 IGF2BP3O00425 579 aaKnown RBP eCLIP17.19■□□□□ 0.34
SS18-204ENST00000539244 USP2O75604 605 aaPredicted RBP17.19■□□□□ 0.34
SS18-204ENST00000539244 IREB2P48200 963 aaKnown RBP17.19■□□□□ 0.34
SS18-204ENST00000539244 RASA3Q14644 834 aa17.19■□□□□ 0.34
SS18-204ENST00000539244 VEZTQ9HBM0 779 aa17.19■□□□□ 0.34
SS18-204ENST00000539244 C9orf78Q9NZ63 289 aaPredicted RBP17.19■□□□□ 0.34
SS18-204ENST00000539244 PCDH10Q9P2E7 1040 aa17.19■□□□□ 0.34
SS18-204ENST00000539244 SERPINA10Q9UK55 444 aa17.19■□□□□ 0.34
SS18-204ENST00000539244 JAG2Q9Y219 1238 aa17.19■□□□□ 0.34
SS18-204ENST00000539244 TESPA1A2RU30 521 aaPredicted RBP17.18■□□□□ 0.34
SS18-204ENST00000539244 TNFAIP1Q13829 316 aa17.18■□□□□ 0.34
SS18-204ENST00000539244 SPDYE2Q495Y8 402 aa17.18■□□□□ 0.34
SS18-204ENST00000539244 MFSD14BQ5SR56 506 aa17.18■□□□□ 0.34
SS18-204ENST00000539244 ANKRD13AQ8IZ07 590 aa17.18■□□□□ 0.34
SS18-204ENST00000539244 KAZALD1Q96I82 304 aa17.18■□□□□ 0.34
SS18-204ENST00000539244 SRCIN1Q9C0H9 1055 aa17.18■□□□□ 0.34
SS18-204ENST00000539244 OTOFQ9HC10 1997 aa17.18■□□□□ 0.34
SS18-204ENST00000539244 UTYO14607 1347 aa17.18■□□□□ 0.34
SS18-204ENST00000539244 PLIN1O60240 522 aa17.17■□□□□ 0.34
SS18-204ENST00000539244 HIBADHP31937 336 aaKnown RBP17.17■□□□□ 0.34
SS18-204ENST00000539244 GJA5P36382 358 aa17.17■□□□□ 0.34
SS18-204ENST00000539244 RBM5P52756 815 aaKnown RBP eCLIP17.17■□□□□ 0.34
SS18-204ENST00000539244 FAM84BQ96KN1 310 aaPredicted RBP17.17■□□□□ 0.34
SS18-204ENST00000539244 ANP32CO43423 234 aa17.16■□□□□ 0.34
SS18-204ENST00000539244 GYG1P46976 350 aa17.16■□□□□ 0.34
SS18-204ENST00000539244 OTUD7BQ6GQQ9 843 aa17.16■□□□□ 0.34
SS18-204ENST00000539244 OTOP1Q7RTM1 612 aa17.16■□□□□ 0.34
SS18-204ENST00000539244 SUCLG2Q96I99 432 aa17.16■□□□□ 0.34
SS18-204ENST00000539244 ZNF70Q9UC06 446 aaPredicted RBP17.16■□□□□ 0.34
SS18-204ENST00000539244 TTF2Q9UNY4 1162 aaKnown RBP17.16■□□□□ 0.34
SS18-204ENST00000539244 RIPOR2Q9Y4F9 1068 aa17.16■□□□□ 0.34
SS18-204ENST00000539244 CENPFP49454 3210 aa17.15■□□□□ 0.34
SS18-204ENST00000539244 RABL6Q3YEC7 729 aaPredicted RBP17.15■□□□□ 0.34
SS18-204ENST00000539244 SLC4A10Q6U841 1118 aa17.15■□□□□ 0.34
SS18-204ENST00000539244 TEPSINQ96N21 525 aa17.15■□□□□ 0.34
SS18-204ENST00000539244 PUS3Q9BZE2 481 aaKnown RBP17.15■□□□□ 0.34
SS18-204ENST00000539244 TRIM17Q9Y577 477 aa17.15■□□□□ 0.34
SS18-204ENST00000539244 MKI67P46013 3256 aaKnown RBP17.15■□□□□ 0.34
SS18-204ENST00000539244 MROH5Q6ZUA9 1318 aa17.15■□□□□ 0.34
SS18-204ENST00000539244 NBPF7P0C2Y1 421 aaPredicted RBP17.14■□□□□ 0.33
SS18-204ENST00000539244 CRHR2Q13324 411 aa17.14■□□□□ 0.33
SS18-204ENST00000539244 INTS3Q68E01 1043 aaKnown RBP17.14■□□□□ 0.33
SS18-204ENST00000539244 FBXO33Q7Z6M2 555 aa17.14■□□□□ 0.33
SS18-204ENST00000539244 DZIP1LQ8IYY4 767 aaKnown RBP17.14■□□□□ 0.33
SS18-204ENST00000539244 ERO1AQ96HE7 468 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms