RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 KAZALD1Q96I82 304 aa10.72□□□□□ -0.69
USP28-203ENST00000537490 SUCLG2Q96I99 432 aa10.72□□□□□ -0.69
USP28-203ENST00000537490 SRCIN1Q9C0H9 1055 aa10.72□□□□□ -0.69
USP28-203ENST00000537490 CNNM1Q9NRU3 951 aa10.72□□□□□ -0.69
USP28-203ENST00000537490 JAG2Q9Y219 1238 aa10.72□□□□□ -0.69
USP28-203ENST00000537490 ZNF521Q96K83 1311 aa10.72□□□□□ -0.69
USP28-203ENST00000537490 F8W031 263 aaPredicted RBP10.71□□□□□ -0.69
USP28-203ENST00000537490 NF2P35240 595 aa10.71□□□□□ -0.69
USP28-203ENST00000537490 PTPN12Q05209 780 aaKnown RBP10.71□□□□□ -0.69
USP28-203ENST00000537490 DLGAP5Q15398 846 aa10.71□□□□□ -0.69
USP28-203ENST00000537490 TAF7LQ5H9L4 462 aa10.71□□□□□ -0.69
USP28-203ENST00000537490 ZNF804AQ7Z570 1209 aa10.71□□□□□ -0.69
USP28-203ENST00000537490 APOBEC3FQ8IUX4 373 aaKnown RBP10.71□□□□□ -0.69
USP28-203ENST00000537490 REM2Q8IYK8 340 aaPredicted RBP10.71□□□□□ -0.69
USP28-203ENST00000537490 PUS3Q9BZE2 481 aaKnown RBP10.71□□□□□ -0.69
USP28-203ENST00000537490 FZD1Q9UP38 647 aa10.71□□□□□ -0.69
USP28-203ENST00000537490 ZNF646O15015 1829 aaPredicted RBP10.7□□□□□ -0.7
USP28-203ENST00000537490 PAPPA2Q9BXP8 1791 aa10.7□□□□□ -0.7
USP28-203ENST00000537490 AOX1Q06278 1338 aa10.7□□□□□ -0.7
USP28-203ENST00000537490 NBPF7P0C2Y1 421 aaPredicted RBP10.7□□□□□ -0.7
USP28-203ENST00000537490 MKRN3Q13064 507 aaKnown RBP10.7□□□□□ -0.7
USP28-203ENST00000537490 CFAP100Q494V2 611 aa10.7□□□□□ -0.7
USP28-203ENST00000537490 ARMC9Q7Z3E5 817 aa10.7□□□□□ -0.7
USP28-203ENST00000537490 MRPL50Q8N5N7 158 aaKnown RBP10.7□□□□□ -0.7
USP28-203ENST00000537490 MTMR14Q8NCE2 650 aa10.7□□□□□ -0.7
USP28-203ENST00000537490 PRMT6Q96LA8 375 aaPredicted RBP10.7□□□□□ -0.7
USP28-203ENST00000537490 DEFB129Q9H1M3 183 aa10.7□□□□□ -0.7
USP28-203ENST00000537490 UTYO14607 1347 aa10.69□□□□□ -0.7
USP28-203ENST00000537490 CLRN2A0PK11 232 aa10.69□□□□□ -0.7
USP28-203ENST00000537490 TBC1D8O95759 1140 aa10.69□□□□□ -0.7
USP28-203ENST00000537490 TM4SF4P48230 202 aa10.69□□□□□ -0.7
USP28-203ENST00000537490 FKBP1AP62942 108 aaKnown RBP10.69□□□□□ -0.7
USP28-203ENST00000537490 MLLT1Q03111 559 aaPredicted RBP10.69□□□□□ -0.7
USP28-203ENST00000537490 LDLRAD1Q5T700 205 aa10.69□□□□□ -0.7
USP28-203ENST00000537490 TDRD7Q8NHU6 1098 aaKnown RBP10.69□□□□□ -0.7
USP28-203ENST00000537490 FAM84BQ96KN1 310 aaPredicted RBP10.69□□□□□ -0.7
USP28-203ENST00000537490 ANGEL1Q9UNK9 670 aaKnown RBP10.69□□□□□ -0.7
USP28-203ENST00000537490 RIPOR2Q9Y4F9 1068 aa10.69□□□□□ -0.7
USP28-203ENST00000537490 CACNA1FO60840 1977 aa10.68□□□□□ -0.7
USP28-203ENST00000537490 FAM205AQ6ZU69 1335 aa10.68□□□□□ -0.7
USP28-203ENST00000537490 SPDYE2BA6NHP3 402 aa10.68□□□□□ -0.7
USP28-203ENST00000537490 SPDYE6P0CI01 402 aa10.68□□□□□ -0.7
USP28-203ENST00000537490 HIBADHP31937 336 aaKnown RBP10.68□□□□□ -0.7
USP28-203ENST00000537490 GYG1P46976 350 aa10.68□□□□□ -0.7
USP28-203ENST00000537490 UBE4AQ14139 1066 aa10.68□□□□□ -0.7
USP28-203ENST00000537490 BICC1Q9H694 974 aaKnown RBP10.68□□□□□ -0.7
USP28-203ENST00000537490 RBM5P52756 815 aaKnown RBP eCLIP10.67□□□□□ -0.7
USP28-203ENST00000537490 MAP3K11Q16584 847 aa10.67□□□□□ -0.7
USP28-203ENST00000537490 RABL6Q3YEC7 729 aaPredicted RBP10.67□□□□□ -0.7
USP28-203ENST00000537490 LRRC24Q50LG9 513 aa10.67□□□□□ -0.7
USP28-203ENST00000537490 NBPF12Q5TAG4 269 aaPredicted RBP10.67□□□□□ -0.7
USP28-203ENST00000537490 SPRYD7Q5W111 196 aa10.67□□□□□ -0.7
USP28-203ENST00000537490 CTU1Q7Z7A3 348 aaKnown RBP10.67□□□□□ -0.7
USP28-203ENST00000537490 ANKRD44Q8N8A2 993 aa10.67□□□□□ -0.7
USP28-203ENST00000537490 ZNF296Q8WUU4 475 aaPredicted RBP10.67□□□□□ -0.7
USP28-203ENST00000537490 SSH1Q8WYL5 1049 aa10.67□□□□□ -0.7
USP28-203ENST00000537490 R3HDMLQ9H3Y0 253 aa10.67□□□□□ -0.7
USP28-203ENST00000537490 VEZTQ9HBM0 779 aa10.67□□□□□ -0.7
USP28-203ENST00000537490 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.67□□□□□ -0.7
USP28-203ENST00000537490 GPR25O00155 361 aa10.66□□□□□ -0.7
USP28-203ENST00000537490 MYO1BO43795 1136 aa10.66□□□□□ -0.7
USP28-203ENST00000537490 SLFN5Q08AF3 891 aa10.66□□□□□ -0.7
USP28-203ENST00000537490 RASA3Q14644 834 aa10.66□□□□□ -0.7
USP28-203ENST00000537490 GRIK5Q16478 980 aa10.66□□□□□ -0.7
USP28-203ENST00000537490 MFSD14BQ5SR56 506 aa10.66□□□□□ -0.7
USP28-203ENST00000537490 FBXO33Q7Z6M2 555 aa10.66□□□□□ -0.7
USP28-203ENST00000537490 SLC10A4Q96EP9 437 aa10.66□□□□□ -0.7
USP28-203ENST00000537490 CLMNQ96JQ2 1002 aa10.66□□□□□ -0.7
USP28-203ENST00000537490 TTF2Q9UNY4 1162 aaKnown RBP10.66□□□□□ -0.7
USP28-203ENST00000537490 PPP2R3BQ9Y5P8 575 aa10.66□□□□□ -0.7
USP28-203ENST00000537490 SSC5DA1L4H1 1573 aa10.65□□□□□ -0.7
USP28-203ENST00000537490 PTPRCP08575 1304 aa10.65□□□□□ -0.7
USP28-203ENST00000537490 MROH5Q6ZUA9 1318 aa10.65□□□□□ -0.7
USP28-203ENST00000537490 E9PSI1 815 aa10.65□□□□□ -0.7
USP28-203ENST00000537490 PPP1R12BO60237 982 aaPredicted RBP10.65□□□□□ -0.7
USP28-203ENST00000537490 USP2O75604 605 aaPredicted RBP10.65□□□□□ -0.7
USP28-203ENST00000537490 SREBF2Q12772 1141 aa10.65□□□□□ -0.7
USP28-203ENST00000537490 SUPT20HL1Q3ZLR7 823 aa10.65□□□□□ -0.7
USP28-203ENST00000537490 KLHDC4Q8TBB5 520 aa10.65□□□□□ -0.7
USP28-203ENST00000537490 CDCA7LQ96GN5 454 aa10.65□□□□□ -0.7
USP28-203ENST00000537490 USP44Q9H0E7 712 aa10.65□□□□□ -0.7
USP28-203ENST00000537490 TDRD3Q9H7E2 651 aaKnown RBP10.65□□□□□ -0.7
USP28-203ENST00000537490 ZNF70Q9UC06 446 aaPredicted RBP10.65□□□□□ -0.7
USP28-203ENST00000537490 IQSEC3Q9UPP2 1182 aaPredicted RBP10.65□□□□□ -0.7
USP28-203ENST00000537490 COL1A1P02452 1464 aaPredicted RBP10.64□□□□□ -0.71
USP28-203ENST00000537490 SOX10P56693 466 aa10.64□□□□□ -0.71
USP28-203ENST00000537490 SPDYE2Q495Y8 402 aa10.64□□□□□ -0.71
USP28-203ENST00000537490 METTL24Q5JXM2 366 aa10.64□□□□□ -0.71
USP28-203ENST00000537490 DZIP1LQ8IYY4 767 aaKnown RBP10.64□□□□□ -0.71
USP28-203ENST00000537490 VGLL2Q8N8G2 317 aa10.64□□□□□ -0.71
USP28-203ENST00000537490 WNK4Q96J92 1243 aa10.64□□□□□ -0.71
USP28-203ENST00000537490 SERPINA10Q9UK55 444 aa10.64□□□□□ -0.71
USP28-203ENST00000537490 AKAP11Q9UKA4 1901 aa10.64□□□□□ -0.71
USP28-203ENST00000537490 A0A1B0GUL6 1792 aa10.63□□□□□ -0.71
USP28-203ENST00000537490 MANSC4A6NHS7 340 aaPredicted RBP10.63□□□□□ -0.71
USP28-203ENST00000537490 PDE8BO95263 885 aa10.63□□□□□ -0.71
USP28-203ENST00000537490 GJA5P36382 358 aa10.63□□□□□ -0.71
USP28-203ENST00000537490 CRKP46108 304 aa10.63□□□□□ -0.71
USP28-203ENST00000537490 BCAMP50895 628 aa10.63□□□□□ -0.71
USP28-203ENST00000537490 CHAF1AQ13111 956 aaPredicted RBP10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms