RNA–Protein interactions for RNA: ENST00000533946.5

SSBP3-215, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 431 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-215ENST00000533946 TRIM27P14373 513 aa12.13□□□□□ -0.47
SSBP3-215ENST00000533946 BCAMP50895 628 aa12.13□□□□□ -0.47
SSBP3-215ENST00000533946 FRAT1Q92837 279 aaPredicted RBP12.13□□□□□ -0.47
SSBP3-215ENST00000533946 DCPSQ96C86 337 aaKnown RBP12.13□□□□□ -0.47
SSBP3-215ENST00000533946 CLRN2A0PK11 232 aa12.12□□□□□ -0.47
SSBP3-215ENST00000533946 LBX1P52954 281 aa12.12□□□□□ -0.47
SSBP3-215ENST00000533946 BRPF1P55201 1214 aaPredicted RBP12.12□□□□□ -0.47
SSBP3-215ENST00000533946 HUNKP57058 714 aa12.12□□□□□ -0.47
SSBP3-215ENST00000533946 IFFO2Q5TF58 517 aa12.12□□□□□ -0.47
SSBP3-215ENST00000533946 FBXO33Q7Z6M2 555 aa12.12□□□□□ -0.47
SSBP3-215ENST00000533946 TDRD7Q8NHU6 1098 aaKnown RBP12.12□□□□□ -0.47
SSBP3-215ENST00000533946 PRMT6Q96LA8 375 aaPredicted RBP12.12□□□□□ -0.47
SSBP3-215ENST00000533946 COL1A1P02452 1464 aaPredicted RBP12.12□□□□□ -0.47
SSBP3-215ENST00000533946 UBE2Q2LH0YL09 131 aa12.11□□□□□ -0.47
SSBP3-215ENST00000533946 HSPA8P11142 646 aaKnown RBP12.11□□□□□ -0.47
SSBP3-215ENST00000533946 FGFR2P21802 821 aa12.11□□□□□ -0.47
SSBP3-215ENST00000533946 ADORA1P30542 326 aa12.11□□□□□ -0.47
SSBP3-215ENST00000533946 PRKG1Q13976 671 aa12.11□□□□□ -0.47
SSBP3-215ENST00000533946 METTL24Q5JXM2 366 aa12.11□□□□□ -0.47
SSBP3-215ENST00000533946 GBA2Q9HCG7 927 aaPredicted RBP12.11□□□□□ -0.47
SSBP3-215ENST00000533946 SSC5DA1L4H1 1573 aa12.1□□□□□ -0.47
SSBP3-215ENST00000533946 CAPN15O75808 1086 aa12.1□□□□□ -0.47
SSBP3-215ENST00000533946 PDE8BO95263 885 aa12.1□□□□□ -0.47
SSBP3-215ENST00000533946 HIBADHP31937 336 aaKnown RBP12.1□□□□□ -0.47
SSBP3-215ENST00000533946 CHAF1AQ13111 956 aaPredicted RBP12.1□□□□□ -0.47
SSBP3-215ENST00000533946 UBE4AQ14139 1066 aa12.1□□□□□ -0.47
SSBP3-215ENST00000533946 INTS3Q68E01 1043 aaKnown RBP12.1□□□□□ -0.47
SSBP3-215ENST00000533946 SULF1Q8IWU6 871 aa12.1□□□□□ -0.47
SSBP3-215ENST00000533946 TMEM57Q8N5G2 664 aa12.1□□□□□ -0.47
SSBP3-215ENST00000533946 C1orf115Q9H7X2 142 aa12.1□□□□□ -0.47
SSBP3-215ENST00000533946 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.1□□□□□ -0.47
SSBP3-215ENST00000533946 CASP8AP2Q9UKL3 1982 aa12.09□□□□□ -0.47
SSBP3-215ENST00000533946 EYA2O00167 538 aa12.09□□□□□ -0.47
SSBP3-215ENST00000533946 UBTFL1P0CB47 393 aaPredicted RBP12.09□□□□□ -0.47
SSBP3-215ENST00000533946 MKRN3Q13064 507 aaKnown RBP12.09□□□□□ -0.47
SSBP3-215ENST00000533946 CFAP100Q494V2 611 aa12.09□□□□□ -0.47
SSBP3-215ENST00000533946 ZNF804AQ7Z570 1209 aa12.09□□□□□ -0.47
SSBP3-215ENST00000533946 API5Q9BZZ5 524 aaKnown RBP12.09□□□□□ -0.47
SSBP3-215ENST00000533946 FAM205AQ6ZU69 1335 aa12.09□□□□□ -0.47
SSBP3-215ENST00000533946 MROH5Q6ZUA9 1318 aa12.09□□□□□ -0.47
SSBP3-215ENST00000533946 PNMA6EA0A0J9YXQ4 647 aa12.08□□□□□ -0.48
SSBP3-215ENST00000533946 CT47B1P0C2W7 299 aaPredicted RBP12.08□□□□□ -0.48
SSBP3-215ENST00000533946 CACNB3P54284 484 aa12.08□□□□□ -0.48
SSBP3-215ENST00000533946 ECM29Q5VYK3 1845 aa12.07□□□□□ -0.48
SSBP3-215ENST00000533946 SPDYE2BA6NHP3 402 aa12.07□□□□□ -0.48
SSBP3-215ENST00000533946 SPDYE6P0CI01 402 aa12.07□□□□□ -0.48
SSBP3-215ENST00000533946 TIMM10P62072 90 aa12.07□□□□□ -0.48
SSBP3-215ENST00000533946 KIF23Q02241 960 aaPredicted RBP12.07□□□□□ -0.48
SSBP3-215ENST00000533946 MFSD14BQ5SR56 506 aa12.07□□□□□ -0.48
SSBP3-215ENST00000533946 RGMBQ6NW40 437 aa12.07□□□□□ -0.48
SSBP3-215ENST00000533946 ATF7IPQ6VMQ6 1270 aa12.07□□□□□ -0.48
SSBP3-215ENST00000533946 TDRD3Q9H7E2 651 aaKnown RBP12.07□□□□□ -0.48
SSBP3-215ENST00000533946 TTF2Q9UNY4 1162 aaKnown RBP12.07□□□□□ -0.48
SSBP3-215ENST00000533946 ARAP2Q8WZ64 1704 aa12.06□□□□□ -0.48
SSBP3-215ENST00000533946 SLURP2P0DP57 97 aa12.06□□□□□ -0.48
SSBP3-215ENST00000533946 PHKA1P46020 1223 aa12.06□□□□□ -0.48
SSBP3-215ENST00000533946 ZNF157P51786 506 aaPredicted RBP12.06□□□□□ -0.48
SSBP3-215ENST00000533946 DLGAP5Q15398 846 aa12.06□□□□□ -0.48
SSBP3-215ENST00000533946 NBPF12Q5TAG4 269 aaPredicted RBP12.06□□□□□ -0.48
SSBP3-215ENST00000533946 RASAL3Q86YV0 1011 aa12.06□□□□□ -0.48
SSBP3-215ENST00000533946 TNS4Q8IZW8 715 aa12.06□□□□□ -0.48
SSBP3-215ENST00000533946 OGFOD1Q8N543 542 aa12.06□□□□□ -0.48
SSBP3-215ENST00000533946 C2orf69Q8N8R5 385 aa12.06□□□□□ -0.48
SSBP3-215ENST00000533946 PANK1Q8TE04 598 aa12.06□□□□□ -0.48
SSBP3-215ENST00000533946 CLMNQ96JQ2 1002 aa12.06□□□□□ -0.48
SSBP3-215ENST00000533946 RBM5P52756 815 aaKnown RBP eCLIP12.05□□□□□ -0.48
SSBP3-215ENST00000533946 TFCP2Q12800 502 aa12.05□□□□□ -0.48
SSBP3-215ENST00000533946 ARHGAP45Q92619 1136 aa12.05□□□□□ -0.48
SSBP3-215ENST00000533946 CSRNP1Q96S65 589 aa12.05□□□□□ -0.48
SSBP3-215ENST00000533946 DEFB129Q9H1M3 183 aa12.05□□□□□ -0.48
SSBP3-215ENST00000533946 R3HDMLQ9H3Y0 253 aa12.05□□□□□ -0.48
SSBP3-215ENST00000533946 VEZTQ9HBM0 779 aa12.05□□□□□ -0.48
SSBP3-215ENST00000533946 MYH13Q9UKX3 1938 aa12.05□□□□□ -0.48
SSBP3-215ENST00000533946 MYO3BQ8WXR4 1341 aa12.05□□□□□ -0.48
SSBP3-215ENST00000533946 PITPNM2Q9BZ72 1349 aa12.05□□□□□ -0.48
SSBP3-215ENST00000533946 PAPPA2Q9BXP8 1791 aa12.05□□□□□ -0.48
SSBP3-215ENST00000533946 HTTP42858 3142 aa12.04□□□□□ -0.48
SSBP3-215ENST00000533946 CENPFP49454 3210 aa12.04□□□□□ -0.48
SSBP3-215ENST00000533946 SRGAP3O43295 1099 aa12.04□□□□□ -0.48
SSBP3-215ENST00000533946 SLC10A3P09131 477 aa12.04□□□□□ -0.48
SSBP3-215ENST00000533946 ECE1P42892 770 aa12.04□□□□□ -0.48
SSBP3-215ENST00000533946 CRKP46108 304 aa12.04□□□□□ -0.48
SSBP3-215ENST00000533946 CTCFP49711 727 aaPredicted RBP12.04□□□□□ -0.48
SSBP3-215ENST00000533946 PUM3Q15397 648 aaKnown RBP12.04□□□□□ -0.48
SSBP3-215ENST00000533946 DIXDC1Q155Q3 683 aa12.04□□□□□ -0.48
SSBP3-215ENST00000533946 PI16Q6UXB8 463 aa12.04□□□□□ -0.48
SSBP3-215ENST00000533946 DZIP1LQ8IYY4 767 aaKnown RBP12.04□□□□□ -0.48
SSBP3-215ENST00000533946 MTMR14Q8NCE2 650 aa12.04□□□□□ -0.48
SSBP3-215ENST00000533946 HHIPL1Q96JK4 782 aa12.04□□□□□ -0.48
SSBP3-215ENST00000533946 ZNF70Q9UC06 446 aaPredicted RBP12.04□□□□□ -0.48
SSBP3-215ENST00000533946 OTOFQ9HC10 1997 aa12.03□□□□□ -0.48
SSBP3-215ENST00000533946 TCP10L2B9ZVM9 353 aa12.03□□□□□ -0.48
SSBP3-215ENST00000533946 GJA5P36382 358 aa12.03□□□□□ -0.48
SSBP3-215ENST00000533946 MAP2K2P36507 400 aa12.03□□□□□ -0.48
SSBP3-215ENST00000533946 FKBP1AP62942 108 aaKnown RBP12.03□□□□□ -0.48
SSBP3-215ENST00000533946 RASA3Q14644 834 aa12.03□□□□□ -0.48
SSBP3-215ENST00000533946 ATP2B3Q16720 1220 aa12.03□□□□□ -0.48
SSBP3-215ENST00000533946 CNKSR2Q8WXI2 1034 aa12.03□□□□□ -0.48
SSBP3-215ENST00000533946 TEPSINQ96N21 525 aa12.03□□□□□ -0.48
SSBP3-215ENST00000533946 TMEM39BQ9GZU3 492 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms