RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 WTIPA6NIX2 430 aaPredicted RBP10.34□□□□□ -0.75
NEDD8-207ENST00000533242 GNAI1P63096 354 aa10.34□□□□□ -0.75
NEDD8-207ENST00000533242 CALD1Q05682 793 aaKnown RBP10.34□□□□□ -0.75
NEDD8-207ENST00000533242 INTS3Q68E01 1043 aaKnown RBP10.34□□□□□ -0.75
NEDD8-207ENST00000533242 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.34□□□□□ -0.75
NEDD8-207ENST00000533242 RLBP1P12271 317 aa10.33□□□□□ -0.76
NEDD8-207ENST00000533242 MAP3K11Q16584 847 aa10.33□□□□□ -0.76
NEDD8-207ENST00000533242 ANGEL1Q9UNK9 670 aaKnown RBP10.33□□□□□ -0.76
NEDD8-207ENST00000533242 COG6Q9Y2V7 657 aa10.33□□□□□ -0.76
NEDD8-207ENST00000533242 RARSP54136 660 aaKnown RBP10.33□□□□□ -0.76
NEDD8-207ENST00000533242 PRKG1Q13976 671 aa10.33□□□□□ -0.76
NEDD8-207ENST00000533242 CCDC30Q5VVM6 783 aa10.33□□□□□ -0.76
NEDD8-207ENST00000533242 IFNL1Q8IU54 200 aa10.33□□□□□ -0.76
NEDD8-207ENST00000533242 GREM2Q9H772 168 aa10.33□□□□□ -0.76
NEDD8-207ENST00000533242 ZBTB47Q9UFB7 747 aaPredicted RBP10.33□□□□□ -0.76
NEDD8-207ENST00000533242 MAP3K2Q9Y2U5 619 aa10.33□□□□□ -0.76
NEDD8-207ENST00000533242 UNCXA6NJT0 531 aa10.32□□□□□ -0.76
NEDD8-207ENST00000533242 ZBTB48P10074 688 aaPredicted RBP10.32□□□□□ -0.76
NEDD8-207ENST00000533242 TTLL5Q6EMB2 1281 aa10.32□□□□□ -0.76
NEDD8-207ENST00000533242 KSR2Q6VAB6 950 aa10.32□□□□□ -0.76
NEDD8-207ENST00000533242 FRAT1Q92837 279 aaPredicted RBP10.32□□□□□ -0.76
NEDD8-207ENST00000533242 SLC10A4Q96EP9 437 aa10.32□□□□□ -0.76
NEDD8-207ENST00000533242 WNK4Q96J92 1243 aa10.32□□□□□ -0.76
NEDD8-207ENST00000533242 ANKRD2Q9GZV1 360 aa10.32□□□□□ -0.76
NEDD8-207ENST00000533242 TRIM17Q9Y577 477 aa10.32□□□□□ -0.76
NEDD8-207ENST00000533242 PPP2R3BQ9Y5P8 575 aa10.32□□□□□ -0.76
NEDD8-207ENST00000533242 ZNF804BA4D1E1 1349 aa10.32□□□□□ -0.76
NEDD8-207ENST00000533242 ELL2O00472 640 aaPredicted RBP10.32□□□□□ -0.76
NEDD8-207ENST00000533242 IGKV5-2P06315 115 aa10.32□□□□□ -0.76
NEDD8-207ENST00000533242 IGHMBP2P38935 993 aaKnown RBP10.32□□□□□ -0.76
NEDD8-207ENST00000533242 RGS3P49796 1198 aa10.32□□□□□ -0.76
NEDD8-207ENST00000533242 C8orf34Q49A92 452 aa10.32□□□□□ -0.76
NEDD8-207ENST00000533242 HABP4Q5JVS0 413 aaKnown RBP10.32□□□□□ -0.76
NEDD8-207ENST00000533242 OTOP1Q7RTM1 612 aa10.32□□□□□ -0.76
NEDD8-207ENST00000533242 TXNRD3Q86VQ6 643 aa10.32□□□□□ -0.76
NEDD8-207ENST00000533242 ERO1AQ96HE7 468 aa10.32□□□□□ -0.76
NEDD8-207ENST00000533242 OTOFQ9HC10 1997 aa10.31□□□□□ -0.76
NEDD8-207ENST00000533242 SSC5DA1L4H1 1573 aa10.31□□□□□ -0.76
NEDD8-207ENST00000533242 NEXNQ0ZGT2 675 aa10.31□□□□□ -0.76
NEDD8-207ENST00000533242 KIAA0825Q8IV33 1275 aa10.31□□□□□ -0.76
NEDD8-207ENST00000533242 C8orf58Q8NAV2 365 aa10.31□□□□□ -0.76
NEDD8-207ENST00000533242 MTMR14Q8NCE2 650 aa10.31□□□□□ -0.76
NEDD8-207ENST00000533242 H7C1W4 665 aa10.3□□□□□ -0.76
NEDD8-207ENST00000533242 DLGAP5Q15398 846 aa10.3□□□□□ -0.76
NEDD8-207ENST00000533242 TSR2Q969E8 191 aaKnown RBP10.3□□□□□ -0.76
NEDD8-207ENST00000533242 PLA2G12BQ9BX93 195 aa10.3□□□□□ -0.76
NEDD8-207ENST00000533242 DEFB129Q9H1M3 183 aa10.3□□□□□ -0.76
NEDD8-207ENST00000533242 PTPN22Q9Y2R2 807 aa10.3□□□□□ -0.76
NEDD8-207ENST00000533242 CACNA1FO60840 1977 aa10.3□□□□□ -0.76
NEDD8-207ENST00000533242 POTEFA5A3E0 1075 aa10.3□□□□□ -0.76
NEDD8-207ENST00000533242 GTF2IP78347 998 aa10.3□□□□□ -0.76
NEDD8-207ENST00000533242 PI4KAP2A4QPH2 592 aa10.29□□□□□ -0.76
NEDD8-207ENST00000533242 NEURL1BA8MQ27 555 aa10.29□□□□□ -0.76
NEDD8-207ENST00000533242 IGF2BP3O00425 579 aaKnown RBP eCLIP10.29□□□□□ -0.76
NEDD8-207ENST00000533242 PPP1R12BO60237 982 aaPredicted RBP10.29□□□□□ -0.76
NEDD8-207ENST00000533242 KLRK1P26718 216 aa10.29□□□□□ -0.76
NEDD8-207ENST00000533242 PDE3AQ14432 1141 aa10.29□□□□□ -0.76
NEDD8-207ENST00000533242 CCDC27Q2M243 656 aa10.29□□□□□ -0.76
NEDD8-207ENST00000533242 OTUD7BQ6GQQ9 843 aa10.29□□□□□ -0.76
NEDD8-207ENST00000533242 WDR63Q8IWG1 891 aa10.29□□□□□ -0.76
NEDD8-207ENST00000533242 PI4KAP1Q8N8J0 262 aa10.29□□□□□ -0.76
NEDD8-207ENST00000533242 ARMC5Q96C12 935 aa10.29□□□□□ -0.76
NEDD8-207ENST00000533242 CD209Q9NNX6 404 aa10.29□□□□□ -0.76
NEDD8-207ENST00000533242 SUPT20HL1Q3ZLR7 823 aa10.29□□□□□ -0.76
NEDD8-207ENST00000533242 C15orf52Q6ZUT6 534 aaKnown RBP10.29□□□□□ -0.76
NEDD8-207ENST00000533242 CLUAP1Q96AJ1 413 aa10.29□□□□□ -0.76
NEDD8-207ENST00000533242 CLMNQ96JQ2 1002 aa10.29□□□□□ -0.76
NEDD8-207ENST00000533242 ARAP2Q8WZ64 1704 aa10.29□□□□□ -0.76
NEDD8-207ENST00000533242 KCNJ4P48050 445 aa10.28□□□□□ -0.76
NEDD8-207ENST00000533242 FKBP1AP62942 108 aaKnown RBP10.28□□□□□ -0.76
NEDD8-207ENST00000533242 CWF19L2Q2TBE0 894 aaKnown RBP10.28□□□□□ -0.76
NEDD8-207ENST00000533242 UBE3BQ7Z3V4 1068 aa10.28□□□□□ -0.76
NEDD8-207ENST00000533242 CD99L2Q8TCZ2 262 aa10.28□□□□□ -0.76
NEDD8-207ENST00000533242 MPHOSPH8Q99549 860 aa10.28□□□□□ -0.76
NEDD8-207ENST00000533242 FZD1Q9UP38 647 aa10.28□□□□□ -0.76
NEDD8-207ENST00000533242 IRS2Q9Y4H2 1338 aa10.28□□□□□ -0.76
NEDD8-207ENST00000533242 TESPA1A2RU30 521 aaPredicted RBP10.28□□□□□ -0.76
NEDD8-207ENST00000533242 MYO1BO43795 1136 aa10.28□□□□□ -0.76
NEDD8-207ENST00000533242 CSF1RP07333 972 aa10.28□□□□□ -0.76
NEDD8-207ENST00000533242 ITGA6P23229 1130 aa10.28□□□□□ -0.76
NEDD8-207ENST00000533242 IREB2P48200 963 aaKnown RBP10.28□□□□□ -0.76
NEDD8-207ENST00000533242 CERS5Q8N5B7 392 aa10.28□□□□□ -0.76
NEDD8-207ENST00000533242 STK31Q9BXU1 1019 aa10.28□□□□□ -0.76
NEDD8-207ENST00000533242 PCDHB15Q9Y5E8 787 aa10.28□□□□□ -0.76
NEDD8-207ENST00000533242 SLC4A3P48751 1232 aa10.27□□□□□ -0.77
NEDD8-207ENST00000533242 CHRNDQ07001 517 aa10.27□□□□□ -0.77
NEDD8-207ENST00000533242 CRHR2Q13324 411 aa10.27□□□□□ -0.77
NEDD8-207ENST00000533242 EFCC1Q9HA90 598 aa10.27□□□□□ -0.77
NEDD8-207ENST00000533242 NPM3O75607 178 aaKnown RBP10.27□□□□□ -0.77
NEDD8-207ENST00000533242 GJA5P36382 358 aa10.27□□□□□ -0.77
NEDD8-207ENST00000533242 CASP7P55210 303 aa10.27□□□□□ -0.77
NEDD8-207ENST00000533242 GCKRQ14397 625 aa10.27□□□□□ -0.77
NEDD8-207ENST00000533242 CFAP100Q494V2 611 aa10.27□□□□□ -0.77
NEDD8-207ENST00000533242 TSPYL6Q8N831 410 aa10.27□□□□□ -0.77
NEDD8-207ENST00000533242 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.27□□□□□ -0.77
NEDD8-207ENST00000533242 SPDYE2BA6NHP3 402 aa10.26□□□□□ -0.77
NEDD8-207ENST00000533242 USP2O75604 605 aaPredicted RBP10.26□□□□□ -0.77
NEDD8-207ENST00000533242 SPDYE6P0CI01 402 aa10.26□□□□□ -0.77
NEDD8-207ENST00000533242 IL1R1P14778 569 aa10.26□□□□□ -0.77
NEDD8-207ENST00000533242 SP3Q02447 781 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms