RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 IRS2Q9Y4H2 1338 aa22.47■■□□□ 1.19
PCF11-206ENST00000533018 IL1R1P14778 569 aa22.46■■□□□ 1.19
PCF11-206ENST00000533018 DGKZQ13574 1117 aa22.46■■□□□ 1.19
PCF11-206ENST00000533018 CERS5Q8N5B7 392 aa22.46■■□□□ 1.19
PCF11-206ENST00000533018 MCOLN1Q9GZU1 580 aa22.46■■□□□ 1.19
PCF11-206ENST00000533018 SAGE1Q9NXZ1 904 aa22.46■■□□□ 1.19
PCF11-206ENST00000533018 REM2Q8IYK8 340 aaPredicted RBP22.45■■□□□ 1.18
PCF11-206ENST00000533018 PUS3Q9BZE2 481 aaKnown RBP22.45■■□□□ 1.18
PCF11-206ENST00000533018 MYO1BO43795 1136 aa22.44■■□□□ 1.18
PCF11-206ENST00000533018 RBM5P52756 815 aaKnown RBP eCLIP22.44■■□□□ 1.182e-6■■□□□ 12.9
PCF11-206ENST00000533018 KAZALD1Q96I82 304 aa22.44■■□□□ 1.18
PCF11-206ENST00000533018 BICC1Q9H694 974 aaKnown RBP22.44■■□□□ 1.18
PCF11-206ENST00000533018 PTPRCP08575 1304 aa22.43■■□□□ 1.18
PCF11-206ENST00000533018 CFAP100Q494V2 611 aa22.43■■□□□ 1.18
PCF11-206ENST00000533018 ARMC9Q7Z3E5 817 aa22.43■■□□□ 1.18
PCF11-206ENST00000533018 SSH1Q8WYL5 1049 aa22.43■■□□□ 1.18
PCF11-206ENST00000533018 GYG1P46976 350 aa22.42■■□□□ 1.18
PCF11-206ENST00000533018 MKRN3Q13064 507 aaKnown RBP22.42■■□□□ 1.18
PCF11-206ENST00000533018 UBE4AQ14139 1066 aa22.42■■□□□ 1.18
PCF11-206ENST00000533018 ZBED3Q96IU2 234 aaPredicted RBP22.42■■□□□ 1.18
PCF11-206ENST00000533018 DEFB129Q9H1M3 183 aa22.42■■□□□ 1.18
PCF11-206ENST00000533018 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.42■■□□□ 1.18
PCF11-206ENST00000533018 ECM29Q5VYK3 1845 aa22.41■■□□□ 1.18
PCF11-206ENST00000533018 UTYO14607 1347 aa22.41■■□□□ 1.18
PCF11-206ENST00000533018 HIBADHP31937 336 aaKnown RBP22.41■■□□□ 1.18
PCF11-206ENST00000533018 FKBP1AP62942 108 aaKnown RBP22.41■■□□□ 1.18
PCF11-206ENST00000533018 SLFN5Q08AF3 891 aa22.41■■□□□ 1.18
PCF11-206ENST00000533018 ANGEL1Q9UNK9 670 aaKnown RBP22.41■■□□□ 1.18
PCF11-206ENST00000533018 PCDHAC2Q9Y5I4 1007 aa22.41■■□□□ 1.18
PCF11-206ENST00000533018 MROH5Q6ZUA9 1318 aa22.4■■□□□ 1.18
PCF11-206ENST00000533018 CLRN2A0PK11 232 aa22.4■■□□□ 1.18
PCF11-206ENST00000533018 VPS37DQ86XT2 251 aa22.4■■□□□ 1.18
PCF11-206ENST00000533018 VEZTQ9HBM0 779 aa22.4■■□□□ 1.18
PCF11-206ENST00000533018 METTL24Q5JXM2 366 aa22.39■■□□□ 1.17
PCF11-206ENST00000533018 MFSD14BQ5SR56 506 aa22.39■■□□□ 1.17
PCF11-206ENST00000533018 MTMR14Q8NCE2 650 aa22.39■■□□□ 1.17
PCF11-206ENST00000533018 CDCA7LQ96GN5 454 aa22.39■■□□□ 1.17
PCF11-206ENST00000533018 PRMT6Q96LA8 375 aaPredicted RBP22.39■■□□□ 1.17
PCF11-206ENST00000533018 RIPOR2Q9Y4F9 1068 aa22.39■■□□□ 1.17
PCF11-206ENST00000533018 SPDYE2BA6NHP3 402 aa22.38■■□□□ 1.17
PCF11-206ENST00000533018 FRAT2O75474 233 aaPredicted RBP22.38■■□□□ 1.17
PCF11-206ENST00000533018 SPDYE6P0CI01 402 aa22.38■■□□□ 1.17
PCF11-206ENST00000533018 PTPN12Q05209 780 aaKnown RBP22.38■■□□□ 1.17
PCF11-206ENST00000533018 RABL6Q3YEC7 729 aaPredicted RBP22.38■■□□□ 1.17
PCF11-206ENST00000533018 TDRD7Q8NHU6 1098 aaKnown RBP22.38■■□□□ 1.17
PCF11-206ENST00000533018 FAM84BQ96KN1 310 aaPredicted RBP22.38■■□□□ 1.17
PCF11-206ENST00000533018 SMC4Q9NTJ3 1288 aa22.38■■□□□ 1.17
PCF11-206ENST00000533018 FZD1Q9UP38 647 aa22.38■■□□□ 1.17
PCF11-206ENST00000533018 FAM205AQ6ZU69 1335 aa22.37■■□□□ 1.17
PCF11-206ENST00000533018 COL1A1P02452 1464 aaPredicted RBP22.37■■□□□ 1.17
PCF11-206ENST00000533018 LRRC24Q50LG9 513 aa22.37■■□□□ 1.17
PCF11-206ENST00000533018 ANKRD44Q8N8A2 993 aa22.37■■□□□ 1.17
PCF11-206ENST00000533018 TTF2Q9UNY4 1162 aaKnown RBP22.37■■□□□ 1.17
PCF11-206ENST00000533018 PPP1R12BO60237 982 aaPredicted RBP22.36■■□□□ 1.17
PCF11-206ENST00000533018 CAVIN4Q5BKX8 364 aa22.36■■□□□ 1.17
PCF11-206ENST00000533018 KLHDC4Q8TBB5 520 aa22.36■■□□□ 1.17
PCF11-206ENST00000533018 USP44Q9H0E7 712 aa22.36■■□□□ 1.17
PCF11-206ENST00000533018 IQSEC3Q9UPP2 1182 aaPredicted RBP22.36■■□□□ 1.17
PCF11-206ENST00000533018 PPP2R3BQ9Y5P8 575 aa22.36■■□□□ 1.17
PCF11-206ENST00000533018 TBC1D8O95759 1140 aa22.35■■□□□ 1.17
PCF11-206ENST00000533018 CHAF1AQ13111 956 aaPredicted RBP22.35■■□□□ 1.17
PCF11-206ENST00000533018 ALDH1L2Q3SY69 923 aa22.35■■□□□ 1.17
PCF11-206ENST00000533018 SUPT20HL1Q3ZLR7 823 aa22.35■■□□□ 1.17
PCF11-206ENST00000533018 SREBF2Q12772 1141 aa22.34■■□□□ 1.17
PCF11-206ENST00000533018 SLC10A4Q96EP9 437 aa22.34■■□□□ 1.17
PCF11-206ENST00000533018 PDE8BO95263 885 aa22.33■■□□□ 1.17
PCF11-206ENST00000533018 TM4SF4P48230 202 aa22.33■■□□□ 1.17
PCF11-206ENST00000533018 LDLRAD1Q5T700 205 aa22.33■■□□□ 1.17
PCF11-206ENST00000533018 SERPINA10Q9UK55 444 aa22.33■■□□□ 1.17
PCF11-206ENST00000533018 AOX1Q06278 1338 aa22.32■■□□□ 1.16
PCF11-206ENST00000533018 RASA3Q14644 834 aa22.32■■□□□ 1.16
PCF11-206ENST00000533018 NBPF12Q5TAG4 269 aaPredicted RBP22.32■■□□□ 1.16
PCF11-206ENST00000533018 TDRD3Q9H7E2 651 aaKnown RBP22.32■■□□□ 1.16
PCF11-206ENST00000533018 TNFAIP1Q13829 316 aa22.31■■□□□ 1.16
PCF11-206ENST00000533018 SPRYD7Q5W111 196 aa22.31■■□□□ 1.16
PCF11-206ENST00000533018 FBXO33Q7Z6M2 555 aa22.31■■□□□ 1.16
PCF11-206ENST00000533018 CTU1Q7Z7A3 348 aaKnown RBP22.31■■□□□ 1.16
PCF11-206ENST00000533018 ZNF70Q9UC06 446 aaPredicted RBP22.31■■□□□ 1.16
PCF11-206ENST00000533018 CRKP46108 304 aa22.3■■□□□ 1.16
PCF11-206ENST00000533018 MLLT1Q03111 559 aaPredicted RBP22.3■■□□□ 1.16
PCF11-206ENST00000533018 NOB1Q9ULX3 412 aaKnown RBP22.3■■□□□ 1.16
PCF11-206ENST00000533018 ARAP2Q8WZ64 1704 aa22.29■■□□□ 1.16
PCF11-206ENST00000533018 IFIT1P09914 478 aaKnown RBP22.29■■□□□ 1.16
PCF11-206ENST00000533018 IREB2P48200 963 aaKnown RBP22.29■■□□□ 1.16
PCF11-206ENST00000533018 BCAMP50895 628 aa22.29■■□□□ 1.16
PCF11-206ENST00000533018 DZIP1LQ8IYY4 767 aaKnown RBP22.29■■□□□ 1.16
PCF11-206ENST00000533018 VGLL2Q8N8G2 317 aa22.29■■□□□ 1.16
PCF11-206ENST00000533018 TBC1D22AQ8WUA7 517 aa22.29■■□□□ 1.16
PCF11-206ENST00000533018 ZNF296Q8WUU4 475 aaPredicted RBP22.29■■□□□ 1.16
PCF11-206ENST00000533018 CLMNQ96JQ2 1002 aa22.29■■□□□ 1.16
PCF11-206ENST00000533018 SSC5DA1L4H1 1573 aa22.29■■□□□ 1.16
PCF11-206ENST00000533018 TCP10L2B9ZVM9 353 aa22.28■■□□□ 1.16
PCF11-206ENST00000533018 UBTFL1P0CB47 393 aaPredicted RBP22.28■■□□□ 1.16
PCF11-206ENST00000533018 PUM3Q15397 648 aaKnown RBP22.28■■□□□ 1.16
PCF11-206ENST00000533018 MAP3K11Q16584 847 aa22.28■■□□□ 1.16
PCF11-206ENST00000533018 SPDYE2Q495Y8 402 aa22.28■■□□□ 1.16
PCF11-206ENST00000533018 EYA2O00167 538 aa22.27■■□□□ 1.16
PCF11-206ENST00000533018 TNNI2P48788 182 aa22.27■■□□□ 1.16
PCF11-206ENST00000533018 GRIK5Q16478 980 aa22.27■■□□□ 1.16
PCF11-206ENST00000533018 TRMT2AQ8IZ69 625 aaKnown RBP22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms