RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 WNT10BO00744 389 aa12.09□□□□□ -0.47
RNF4-221ENST00000513643 MS4A1P11836 297 aa12.09□□□□□ -0.47
RNF4-221ENST00000513643 BCAMP50895 628 aa12.09□□□□□ -0.47
RNF4-221ENST00000513643 RBM26Q5T8P6 1007 aaKnown RBP12.09□□□□□ -0.47
RNF4-221ENST00000513643 FTSJ3Q8IY81 847 aaKnown RBP12.09□□□□□ -0.47
RNF4-221ENST00000513643 SIL1Q9H173 461 aa12.09□□□□□ -0.47
RNF4-221ENST00000513643 CEP126Q9P2H0 1117 aa12.09□□□□□ -0.47
RNF4-221ENST00000513643 NOP58Q9Y2X3 529 aaKnown RBP12.09□□□□□ -0.47
RNF4-221ENST00000513643 IFIT1P09914 478 aaKnown RBP12.08□□□□□ -0.48
RNF4-221ENST00000513643 PDE3AQ14432 1141 aa12.08□□□□□ -0.48
RNF4-221ENST00000513643 MVPQ14764 893 aaKnown RBP12.08□□□□□ -0.48
RNF4-221ENST00000513643 NBPF9Q3BBW0 867 aa12.08□□□□□ -0.48
RNF4-221ENST00000513643 CAVIN4Q5BKX8 364 aa12.08□□□□□ -0.48
RNF4-221ENST00000513643 DLK2Q6UY11 383 aa12.08□□□□□ -0.48
RNF4-221ENST00000513643 USP48Q86UV5 1035 aa12.08□□□□□ -0.48
RNF4-221ENST00000513643 ITPRIPQ8IWB1 547 aa12.08□□□□□ -0.48
RNF4-221ENST00000513643 OGFOD1Q8N543 542 aa12.08□□□□□ -0.48
RNF4-221ENST00000513643 MRIQ9BWK5 157 aa12.08□□□□□ -0.48
RNF4-221ENST00000513643 ZBTB40Q9NUA8 1239 aa12.08□□□□□ -0.48
RNF4-221ENST00000513643 CNTNAP1P78357 1384 aa12.07□□□□□ -0.48
RNF4-221ENST00000513643 SLC5A1P13866 664 aa12.07□□□□□ -0.48
RNF4-221ENST00000513643 GRIK5Q16478 980 aa12.07□□□□□ -0.48
RNF4-221ENST00000513643 ATP2B3Q16720 1220 aa12.07□□□□□ -0.48
RNF4-221ENST00000513643 ANGEL2Q5VTE6 544 aaKnown RBP12.07□□□□□ -0.48
RNF4-221ENST00000513643 CEP85Q6P2H3 762 aa12.07□□□□□ -0.48
RNF4-221ENST00000513643 KRT26Q7Z3Y9 468 aa12.07□□□□□ -0.48
RNF4-221ENST00000513643 KIAA0825Q8IV33 1275 aa12.07□□□□□ -0.48
RNF4-221ENST00000513643 HHIPL1Q96JK4 782 aa12.07□□□□□ -0.48
RNF4-221ENST00000513643 GGA3Q9NZ52 723 aa12.07□□□□□ -0.48
RNF4-221ENST00000513643 TLL2Q9Y6L7 1015 aa12.07□□□□□ -0.48
RNF4-221ENST00000513643 TIMM10P62072 90 aa12.06□□□□□ -0.48
RNF4-221ENST00000513643 TFCP2Q12800 502 aa12.06□□□□□ -0.48
RNF4-221ENST00000513643 MFSD14BQ5SR56 506 aa12.06□□□□□ -0.48
RNF4-221ENST00000513643 C20orf194Q5TEA3 1177 aa12.06□□□□□ -0.48
RNF4-221ENST00000513643 SAPCD2Q86UD0 394 aa12.06□□□□□ -0.48
RNF4-221ENST00000513643 DCPSQ96C86 337 aaKnown RBP12.06□□□□□ -0.48
RNF4-221ENST00000513643 GPR108Q9NPR9 543 aa12.06□□□□□ -0.48
RNF4-221ENST00000513643 SERPINA10Q9UK55 444 aa12.06□□□□□ -0.48
RNF4-221ENST00000513643 SUGT1Q9Y2Z0 365 aa12.06□□□□□ -0.48
RNF4-221ENST00000513643 POLR2AP24928 1970 aaKnown RBP12.06□□□□□ -0.48
RNF4-221ENST00000513643 SPDYE2BA6NHP3 402 aa12.05□□□□□ -0.48
RNF4-221ENST00000513643 ADM5C9JUS6 153 aa12.05□□□□□ -0.48
RNF4-221ENST00000513643 SEMA3EO15041 775 aa12.05□□□□□ -0.48
RNF4-221ENST00000513643 SPDYE6P0CI01 402 aa12.05□□□□□ -0.48
RNF4-221ENST00000513643 ADORA1P30542 326 aa12.05□□□□□ -0.48
RNF4-221ENST00000513643 HDLBPQ00341 1268 aaKnown RBP12.05□□□□□ -0.48
RNF4-221ENST00000513643 SIRT2Q8IXJ6 389 aa12.05□□□□□ -0.48
RNF4-221ENST00000513643 TBC1D22AQ8WUA7 517 aa12.05□□□□□ -0.48
RNF4-221ENST00000513643 PRMT6Q96LA8 375 aaPredicted RBP12.05□□□□□ -0.48
RNF4-221ENST00000513643 C1orf115Q9H7X2 142 aa12.05□□□□□ -0.48
RNF4-221ENST00000513643 HDAC9Q9UKV0 1011 aa12.05□□□□□ -0.48
RNF4-221ENST00000513643 DDX19BQ9UMR2 479 aa12.05□□□□□ -0.48
RNF4-221ENST00000513643 JAG2Q9Y219 1238 aa12.05□□□□□ -0.48
RNF4-221ENST00000513643 PCDHAC2Q9Y5I4 1007 aa12.05□□□□□ -0.48
RNF4-221ENST00000513643 COL1A1P02452 1464 aaPredicted RBP12.05□□□□□ -0.48
RNF4-221ENST00000513643 AOX1Q06278 1338 aa12.05□□□□□ -0.48
RNF4-221ENST00000513643 PDS5AQ29RF7 1337 aaKnown RBP12.05□□□□□ -0.48
RNF4-221ENST00000513643 SALL1Q9NSC2 1324 aa12.05□□□□□ -0.48
RNF4-221ENST00000513643 A0A1B0GUL7 405 aa12.04□□□□□ -0.48
RNF4-221ENST00000513643 CELF2O95319 508 aaKnown RBP12.04□□□□□ -0.48
RNF4-221ENST00000513643 PHKA1P46020 1223 aa12.04□□□□□ -0.48
RNF4-221ENST00000513643 VEGFBP49765 207 aa12.04□□□□□ -0.48
RNF4-221ENST00000513643 DEFB115Q30KQ5 88 aa12.04□□□□□ -0.48
RNF4-221ENST00000513643 CCDC102BQ68D86 513 aa12.04□□□□□ -0.48
RNF4-221ENST00000513643 VPS37DQ86XT2 251 aa12.04□□□□□ -0.48
RNF4-221ENST00000513643 SULF1Q8IWU6 871 aa12.04□□□□□ -0.48
RNF4-221ENST00000513643 FBXW7Q969H0 707 aa12.04□□□□□ -0.48
RNF4-221ENST00000513643 IQSEC3Q9UPP2 1182 aaPredicted RBP12.04□□□□□ -0.48
RNF4-221ENST00000513643 AKAP2Q9Y2D5 859 aa12.04□□□□□ -0.48
RNF4-221ENST00000513643 COG6Q9Y2V7 657 aa12.04□□□□□ -0.48
RNF4-221ENST00000513643 G3BP1Q13283 466 aaKnown RBP eCLIP12.03□□□□□ -0.48
RNF4-221ENST00000513643 DLGAP5Q15398 846 aa12.03□□□□□ -0.48
RNF4-221ENST00000513643 CFAP100Q494V2 611 aa12.03□□□□□ -0.48
RNF4-221ENST00000513643 RPAP2Q8IXW5 612 aaPredicted RBP12.03□□□□□ -0.48
RNF4-221ENST00000513643 WDR66Q8TBY9 1149 aa12.03□□□□□ -0.48
RNF4-221ENST00000513643 CDCA5Q96FF9 252 aa12.03□□□□□ -0.48
RNF4-221ENST00000513643 XAGE2Q96GT9 111 aa12.03□□□□□ -0.48
RNF4-221ENST00000513643 MKRN1Q9UHC7 482 aaKnown RBP12.03□□□□□ -0.48
RNF4-221ENST00000513643 TRPM7Q96QT4 1865 aa12.03□□□□□ -0.48
RNF4-221ENST00000513643 TTF2Q9UNY4 1162 aaKnown RBP12.02□□□□□ -0.49
RNF4-221ENST00000513643 F8W031 263 aaPredicted RBP12.01□□□□□ -0.49
RNF4-221ENST00000513643 SURF6O75683 361 aaKnown RBP12.01□□□□□ -0.49
RNF4-221ENST00000513643 ARID4AP29374 1257 aaPredicted RBP12.01□□□□□ -0.49
RNF4-221ENST00000513643 CRKP46108 304 aa12.01□□□□□ -0.49
RNF4-221ENST00000513643 FKBP1BP68106 108 aa12.01□□□□□ -0.49
RNF4-221ENST00000513643 RASGRF1Q13972 1273 aa12.01□□□□□ -0.49
RNF4-221ENST00000513643 SPDYE2Q495Y8 402 aa12.01□□□□□ -0.49
RNF4-221ENST00000513643 APOBEC3HQ6NTF7 200 aaKnown RBP12.01□□□□□ -0.49
RNF4-221ENST00000513643 HHIPL2Q6UWX4 724 aa12.01□□□□□ -0.49
RNF4-221ENST00000513643 APOBEC3FQ8IUX4 373 aaKnown RBP12.01□□□□□ -0.49
RNF4-221ENST00000513643 ZNF512BQ96KM6 892 aaPredicted RBP12.01□□□□□ -0.49
RNF4-221ENST00000513643 ZDHHC15Q96MV8 337 aa12.01□□□□□ -0.49
RNF4-221ENST00000513643 GBA2Q9HCG7 927 aaPredicted RBP12.01□□□□□ -0.49
RNF4-221ENST00000513643 GNL3LQ9NVN8 582 aaKnown RBP12.01□□□□□ -0.49
RNF4-221ENST00000513643 DENND2AQ9ULE3 1009 aa12.01□□□□□ -0.49
RNF4-221ENST00000513643 CHAF1AQ13111 956 aaPredicted RBP12□□□□□ -0.49
RNF4-221ENST00000513643 TNNI3KQ59H18 835 aa12□□□□□ -0.49
RNF4-221ENST00000513643 GOLGA6L2Q8N9W4 650 aaPredicted RBP12□□□□□ -0.49
RNF4-221ENST00000513643 FAM163AQ96GL9 167 aaPredicted RBP12□□□□□ -0.49
RNF4-221ENST00000513643 DEFB129Q9H1M3 183 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms