RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 YDJCA8MPS7 323 aa10.16□□□□□ -0.78
SCN1A-207ENST00000507401 H7C1D1 291 aa10.16□□□□□ -0.78
SCN1A-207ENST00000507401 DPYSL4O14531 572 aa10.16□□□□□ -0.78
SCN1A-207ENST00000507401 RAD17O75943 681 aa10.16□□□□□ -0.78
SCN1A-207ENST00000507401 ATP2B4P23634 1241 aa10.16□□□□□ -0.78
SCN1A-207ENST00000507401 RPS12P25398 132 aaKnown RBP10.16□□□□□ -0.78
SCN1A-207ENST00000507401 GMPSP49915 693 aaPredicted RBP10.16□□□□□ -0.78
SCN1A-207ENST00000507401 CASP7P55210 303 aa10.16□□□□□ -0.78
SCN1A-207ENST00000507401 MAP1SQ66K74 1059 aaPredicted RBP10.16□□□□□ -0.78
SCN1A-207ENST00000507401 ADGRD1Q6QNK2 874 aa10.16□□□□□ -0.78
SCN1A-207ENST00000507401 UBE3BQ7Z3V4 1068 aa10.16□□□□□ -0.78
SCN1A-207ENST00000507401 RNF166Q96A37 237 aaPredicted RBP10.16□□□□□ -0.78
SCN1A-207ENST00000507401 BCL2L13Q9BXK5 485 aa10.16□□□□□ -0.78
SCN1A-207ENST00000507401 GGA1Q9UJY5 639 aa10.16□□□□□ -0.78
SCN1A-207ENST00000507401 DUOX1Q9NRD9 1551 aa10.16□□□□□ -0.78
SCN1A-207ENST00000507401 LTBP1Q14766 1721 aa10.16□□□□□ -0.78
SCN1A-207ENST00000507401 XDHP47989 1333 aa10.15□□□□□ -0.78
SCN1A-207ENST00000507401 E9PSI1 815 aa10.15□□□□□ -0.78
SCN1A-207ENST00000507401 TK2O00142 265 aa10.15□□□□□ -0.78
SCN1A-207ENST00000507401 HRO43593 1189 aa10.15□□□□□ -0.78
SCN1A-207ENST00000507401 BEND3Q5T5X7 828 aa10.15□□□□□ -0.78
SCN1A-207ENST00000507401 PODNQ7Z5L7 613 aa10.15□□□□□ -0.78
SCN1A-207ENST00000507401 CCDC85AQ96PX6 553 aaPredicted RBP10.15□□□□□ -0.78
SCN1A-207ENST00000507401 GREM2Q9H772 168 aa10.15□□□□□ -0.78
SCN1A-207ENST00000507401 CNOT7Q9UIV1 285 aaKnown RBP10.15□□□□□ -0.78
SCN1A-207ENST00000507401 MINPP1Q9UNW1 487 aa10.15□□□□□ -0.78
SCN1A-207ENST00000507401 MYH3P11055 1940 aa10.14□□□□□ -0.79
SCN1A-207ENST00000507401 ECE2O60344 883 aa10.14□□□□□ -0.79
SCN1A-207ENST00000507401 UFL1O94874 794 aa10.14□□□□□ -0.79
SCN1A-207ENST00000507401 VIL1P09327 827 aaKnown RBP10.14□□□□□ -0.79
SCN1A-207ENST00000507401 KCNK17Q96T54 332 aa10.14□□□□□ -0.79
SCN1A-207ENST00000507401 ADAM33Q9BZ11 813 aa10.14□□□□□ -0.79
SCN1A-207ENST00000507401 ANKRD2Q9GZV1 360 aa10.14□□□□□ -0.79
SCN1A-207ENST00000507401 DBNDD1Q9H9R9 158 aa10.14□□□□□ -0.79
SCN1A-207ENST00000507401 PCDHGA10Q9Y5H3 936 aa10.14□□□□□ -0.79
SCN1A-207ENST00000507401 COL4A1P02462 1669 aa10.13□□□□□ -0.79
SCN1A-207ENST00000507401 PSMD14O00487 310 aa10.13□□□□□ -0.79
SCN1A-207ENST00000507401 ALDH1L1O75891 902 aa10.13□□□□□ -0.79
SCN1A-207ENST00000507401 IGHMBP2P38935 993 aaKnown RBP10.13□□□□□ -0.79
SCN1A-207ENST00000507401 HIRAP54198 1017 aaPredicted RBP10.13□□□□□ -0.79
SCN1A-207ENST00000507401 SLFN5Q08AF3 891 aa10.13□□□□□ -0.79
SCN1A-207ENST00000507401 LEMD3Q9Y2U8 911 aa10.13□□□□□ -0.79
SCN1A-207ENST00000507401 PCNTO95613 3336 aa10.13□□□□□ -0.79
SCN1A-207ENST00000507401 CNTNAP1P78357 1384 aa10.13□□□□□ -0.79
SCN1A-207ENST00000507401 RASSF10A6NK89 507 aa10.12□□□□□ -0.79
SCN1A-207ENST00000507401 F6X3S4 739 aa10.12□□□□□ -0.79
SCN1A-207ENST00000507401 ITGA6P23229 1130 aa10.12□□□□□ -0.79
SCN1A-207ENST00000507401 MMP14P50281 582 aa10.12□□□□□ -0.79
SCN1A-207ENST00000507401 CCT4P50991 539 aaKnown RBP10.12□□□□□ -0.79
SCN1A-207ENST00000507401 FOXO4P98177 505 aa10.12□□□□□ -0.79
SCN1A-207ENST00000507401 DEFB115Q30KQ5 88 aa10.12□□□□□ -0.79
SCN1A-207ENST00000507401 CDC37L1Q7L3B6 337 aa10.12□□□□□ -0.79
SCN1A-207ENST00000507401 TRMT2AQ8IZ69 625 aaKnown RBP10.12□□□□□ -0.79
SCN1A-207ENST00000507401 AGBL3Q8NEM8 1001 aa10.12□□□□□ -0.79
SCN1A-207ENST00000507401 ZDHHC16Q969W1 377 aa10.12□□□□□ -0.79
SCN1A-207ENST00000507401 MPHOSPH8Q99549 860 aa10.12□□□□□ -0.79
SCN1A-207ENST00000507401 SRCIN1Q9C0H9 1055 aa10.12□□□□□ -0.79
SCN1A-207ENST00000507401 KCNQ5Q9NR82 932 aa10.12□□□□□ -0.79
SCN1A-207ENST00000507401 MKRN1Q9UHC7 482 aaKnown RBP10.12□□□□□ -0.79
SCN1A-207ENST00000507401 ZNF609O15014 1411 aa10.11□□□□□ -0.79
SCN1A-207ENST00000507401 ANKRD18BA2A2Z9 1011 aa10.11□□□□□ -0.79
SCN1A-207ENST00000507401 GRM8O00222 908 aa10.11□□□□□ -0.79
SCN1A-207ENST00000507401 IFIT5Q13325 482 aaKnown RBP10.11□□□□□ -0.79
SCN1A-207ENST00000507401 CST9Q5W186 159 aa10.11□□□□□ -0.79
SCN1A-207ENST00000507401 MRPL50Q8N5N7 158 aaKnown RBP10.11□□□□□ -0.79
SCN1A-207ENST00000507401 GPR101Q96P66 508 aaPredicted RBP10.11□□□□□ -0.79
SCN1A-207ENST00000507401 C9orf78Q9NZ63 289 aaPredicted RBP10.11□□□□□ -0.79
SCN1A-207ENST00000507401 ARIH1Q9Y4X5 557 aaPredicted RBP10.11□□□□□ -0.79
SCN1A-207ENST00000507401 MED23Q9ULK4 1368 aa10.11□□□□□ -0.79
SCN1A-207ENST00000507401 PTPRCP08575 1304 aa10.1□□□□□ -0.79
SCN1A-207ENST00000507401 USP17L3A6NCW0 530 aa10.1□□□□□ -0.79
SCN1A-207ENST00000507401 USP17L4A6NCW7 530 aa10.1□□□□□ -0.79
SCN1A-207ENST00000507401 CT47B1P0C2W7 299 aaPredicted RBP10.1□□□□□ -0.79
SCN1A-207ENST00000507401 VEGFBP49765 207 aa10.1□□□□□ -0.79
SCN1A-207ENST00000507401 ZNF280AP59817 542 aaPredicted RBP10.1□□□□□ -0.79
SCN1A-207ENST00000507401 FAM161AQ3B820 660 aa10.1□□□□□ -0.79
SCN1A-207ENST00000507401 ALDH1L2Q3SY69 923 aa10.1□□□□□ -0.79
SCN1A-207ENST00000507401 IFFO2Q5TF58 517 aa10.1□□□□□ -0.79
SCN1A-207ENST00000507401 RSBN1LQ6PCB5 846 aaPredicted RBP10.1□□□□□ -0.79
SCN1A-207ENST00000507401 USP17L1Q7RTZ2 530 aa10.1□□□□□ -0.79
SCN1A-207ENST00000507401 GMLQ99445 158 aa10.1□□□□□ -0.79
SCN1A-207ENST00000507401 COA1Q9GZY4 146 aa10.1□□□□□ -0.79
SCN1A-207ENST00000507401 ZNF804BA4D1E1 1349 aa10.09□□□□□ -0.79
SCN1A-207ENST00000507401 UTYO14607 1347 aa10.09□□□□□ -0.79
SCN1A-207ENST00000507401 DEKP35659 375 aaKnown RBP10.09□□□□□ -0.79
SCN1A-207ENST00000507401 E2F4Q16254 413 aa10.09□□□□□ -0.79
SCN1A-207ENST00000507401 CCDC57Q2TAC2 916 aa10.09□□□□□ -0.79
SCN1A-207ENST00000507401 STRIP1Q5VSL9 837 aa10.09□□□□□ -0.79
SCN1A-207ENST00000507401 SLC4A10Q6U841 1118 aa10.09□□□□□ -0.79
SCN1A-207ENST00000507401 LMBR1LQ6UX01 489 aa10.09□□□□□ -0.79
SCN1A-207ENST00000507401 C15orf52Q6ZUT6 534 aaKnown RBP10.09□□□□□ -0.79
SCN1A-207ENST00000507401 SAMD7Q7Z3H4 446 aa10.09□□□□□ -0.79
SCN1A-207ENST00000507401 TRPM4Q8TD43 1214 aa10.09□□□□□ -0.79
SCN1A-207ENST00000507401 SSH1Q8WYL5 1049 aa10.09□□□□□ -0.79
SCN1A-207ENST00000507401 HHIPL1Q96JK4 782 aa10.09□□□□□ -0.79
SCN1A-207ENST00000507401 SLC4A5Q9BY07 1137 aa10.09□□□□□ -0.79
SCN1A-207ENST00000507401 ABT1Q9ULW3 272 aaKnown RBP10.09□□□□□ -0.79
SCN1A-207ENST00000507401 VPS9D1Q9Y2B5 631 aa10.09□□□□□ -0.79
SCN1A-207ENST00000507401 TRPM7Q96QT4 1865 aa10.08□□□□□ -0.8
SCN1A-207ENST00000507401 SCN9AQ15858 1988 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms