RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 MRPS27Q92552 414 aaKnown RBP15.87■□□□□ 0.13
HDAC1-206ENST00000476391 BAG1Q99933 345 aaPredicted RBP15.87■□□□□ 0.13
HDAC1-206ENST00000476391 SUGCTQ9HAC7 445 aa15.87■□□□□ 0.13
HDAC1-206ENST00000476391 ATXN2Q99700 1313 aaKnown RBP15.87■□□□□ 0.13
HDAC1-206ENST00000476391 ATP7AQ04656 1500 aa15.87■□□□□ 0.13
HDAC1-206ENST00000476391 INPP5BP32019 993 aa15.87■□□□□ 0.13
HDAC1-206ENST00000476391 ELF1P32519 619 aa15.87■□□□□ 0.13
HDAC1-206ENST00000476391 SCRN1Q12765 414 aa15.87■□□□□ 0.13
HDAC1-206ENST00000476391 RNF217Q8TC41 542 aa15.87■□□□□ 0.13
HDAC1-206ENST00000476391 DDX54Q8TDD1 881 aaKnown RBP15.87■□□□□ 0.13
HDAC1-206ENST00000476391 JPH2Q9BR39 696 aaPredicted RBP15.87■□□□□ 0.13
HDAC1-206ENST00000476391 XRN1Q8IZH2 1706 aaKnown RBP15.87■□□□□ 0.13
HDAC1-206ENST00000476391 SLC27A2O14975 620 aa15.86■□□□□ 0.13
HDAC1-206ENST00000476391 LMOD1P29536 600 aaPredicted RBP15.86■□□□□ 0.13
HDAC1-206ENST00000476391 A0A1W2PQ27 194 aa15.86■□□□□ 0.13
HDAC1-206ENST00000476391 A0A1W2PQ64 194 aa15.86■□□□□ 0.13
HDAC1-206ENST00000476391 A0A1W2PQD8 194 aa15.86■□□□□ 0.13
HDAC1-206ENST00000476391 SURF6O75683 361 aaKnown RBP15.86■□□□□ 0.13
HDAC1-206ENST00000476391 SCP2P22307 547 aa15.86■□□□□ 0.13
HDAC1-206ENST00000476391 ME1P48163 572 aa15.86■□□□□ 0.13
HDAC1-206ENST00000476391 WWC2Q6AWC2 1192 aa15.86■□□□□ 0.13
HDAC1-206ENST00000476391 FMNL2Q96PY5 1086 aa15.86■□□□□ 0.13
HDAC1-206ENST00000476391 ZSWIM4Q9H7M6 989 aa15.86■□□□□ 0.13
HDAC1-206ENST00000476391 TMCO5BA8MYB1 307 aa15.85■□□□□ 0.13
HDAC1-206ENST00000476391 JAK2O60674 1132 aa15.85■□□□□ 0.13
HDAC1-206ENST00000476391 SYF2O95926 243 aaKnown RBP15.85■□□□□ 0.13
HDAC1-206ENST00000476391 VSNL1P62760 191 aa15.85■□□□□ 0.13
HDAC1-206ENST00000476391 SAFB2Q14151 953 aaKnown RBP eCLIP15.85■□□□□ 0.13
HDAC1-206ENST00000476391 ADALQ6DHV7 355 aa15.85■□□□□ 0.13
HDAC1-206ENST00000476391 OSCARQ8IYS5 282 aa15.85■□□□□ 0.13
HDAC1-206ENST00000476391 AFAP1Q8N556 730 aa15.85■□□□□ 0.13
HDAC1-206ENST00000476391 CLIC6Q96NY7 704 aa15.85■□□□□ 0.13
HDAC1-206ENST00000476391 USP28Q96RU2 1077 aa15.85■□□□□ 0.13
HDAC1-206ENST00000476391 MCM8Q9UJA3 840 aa15.85■□□□□ 0.13
HDAC1-206ENST00000476391 ABCC6O95255 1503 aa15.85■□□□□ 0.13
HDAC1-206ENST00000476391 LRRIQ3A6PVS8 624 aaPredicted RBP15.85■□□□□ 0.13
HDAC1-206ENST00000476391 SERPINC1P01008 464 aa15.85■□□□□ 0.13
HDAC1-206ENST00000476391 TRHP20396 242 aaPredicted RBP15.85■□□□□ 0.13
HDAC1-206ENST00000476391 FBLN1P23142 703 aa15.85■□□□□ 0.13
HDAC1-206ENST00000476391 POLA2Q14181 598 aa15.85■□□□□ 0.13
HDAC1-206ENST00000476391 CFAP100Q494V2 611 aa15.85■□□□□ 0.13
HDAC1-206ENST00000476391 WDR93Q6P2C0 686 aa15.85■□□□□ 0.13
HDAC1-206ENST00000476391 FAXDC2Q96IV6 333 aa15.85■□□□□ 0.13
HDAC1-206ENST00000476391 HSD3B7Q9H2F3 369 aa15.85■□□□□ 0.13
HDAC1-206ENST00000476391 VEZTQ9HBM0 779 aa15.85■□□□□ 0.13
HDAC1-206ENST00000476391 EMILIN1Q9Y6C2 1016 aa15.85■□□□□ 0.13
HDAC1-206ENST00000476391 CHUKO15111 745 aa15.84■□□□□ 0.13
HDAC1-206ENST00000476391 HSP90B1P14625 803 aaKnown RBP15.84■□□□□ 0.13
HDAC1-206ENST00000476391 CCT5P48643 541 aa15.84■□□□□ 0.13
HDAC1-206ENST00000476391 STK3Q13188 491 aa15.84■□□□□ 0.13
HDAC1-206ENST00000476391 SMARCC1Q92922 1105 aaPredicted RBP15.84■□□□□ 0.13
HDAC1-206ENST00000476391 SNRKQ9NRH2 765 aa15.84■□□□□ 0.13
HDAC1-206ENST00000476391 PUF60Q9UHX1 559 aaKnown RBP15.84■□□□□ 0.13
HDAC1-206ENST00000476391 ATP1A3P13637 1013 aa15.84■□□□□ 0.13
HDAC1-206ENST00000476391 RDXP35241 583 aaKnown RBP15.84■□□□□ 0.13
HDAC1-206ENST00000476391 LLPHQ9BRT6 129 aaKnown RBP15.84■□□□□ 0.13
HDAC1-206ENST00000476391 CDHR2Q9BYE9 1310 aa15.84■□□□□ 0.13
HDAC1-206ENST00000476391 PXDNLA1KZ92 1463 aa15.83■□□□□ 0.13
HDAC1-206ENST00000476391 HIP1O00291 1037 aa15.83■□□□□ 0.12
HDAC1-206ENST00000476391 SLC3A2P08195 630 aaKnown RBP15.83■□□□□ 0.12
HDAC1-206ENST00000476391 UBTFL1P0CB47 393 aaPredicted RBP15.83■□□□□ 0.12
HDAC1-206ENST00000476391 GCFC2P16383 781 aaKnown RBP15.83■□□□□ 0.12
HDAC1-206ENST00000476391 CPLX2Q6PUV4 134 aaKnown RBP15.83■□□□□ 0.12
HDAC1-206ENST00000476391 FMNL3Q8IVF7 1028 aa15.83■□□□□ 0.12
HDAC1-206ENST00000476391 AMOTL1Q8IY63 956 aa15.83■□□□□ 0.12
HDAC1-206ENST00000476391 HMG20BQ9P0W2 317 aa15.83■□□□□ 0.12
HDAC1-206ENST00000476391 CACNA1FO60840 1977 aa15.83■□□□□ 0.12
HDAC1-206ENST00000476391 IRX1P78414 480 aaPredicted RBP15.83■□□□□ 0.12
HDAC1-206ENST00000476391 TBX2Q13207 712 aaPredicted RBP15.83■□□□□ 0.12
HDAC1-206ENST00000476391 KIF4BQ2VIQ3 1234 aa15.83■□□□□ 0.12
HDAC1-206ENST00000476391 HSP90AB4PQ58FF6 505 aa15.83■□□□□ 0.12
HDAC1-206ENST00000476391 TOGARAM2Q6ZUX3 1019 aa15.83■□□□□ 0.12
HDAC1-206ENST00000476391 TEX11Q8IYF3 940 aa15.83■□□□□ 0.12
HDAC1-206ENST00000476391 SMARCC2Q8TAQ2 1214 aa15.83■□□□□ 0.12
HDAC1-206ENST00000476391 STK31Q9BXU1 1019 aa15.83■□□□□ 0.12
HDAC1-206ENST00000476391 FTOQ9C0B1 505 aaKnown RBP eCLIP15.83■□□□□ 0.12
HDAC1-206ENST00000476391 NEDD4P46934 1319 aa15.83■□□□□ 0.12
HDAC1-206ENST00000476391 PIP4K2BP78356 416 aa15.82■□□□□ 0.12
HDAC1-206ENST00000476391 PREPLQ4J6C6 727 aaPredicted RBP15.82■□□□□ 0.12
HDAC1-206ENST00000476391 ISM2Q6H9L7 571 aa15.82■□□□□ 0.12
HDAC1-206ENST00000476391 ARAP3Q8WWN8 1544 aa15.82■□□□□ 0.12
HDAC1-206ENST00000476391 DPF2Q92785 391 aa15.82■□□□□ 0.12
HDAC1-206ENST00000476391 EVI5LQ96CN4 794 aa15.82■□□□□ 0.12
HDAC1-206ENST00000476391 XAGE2Q96GT9 111 aa15.82■□□□□ 0.12
HDAC1-206ENST00000476391 TCEANC2Q96MN5 208 aa15.82■□□□□ 0.12
HDAC1-206ENST00000476391 NPHP4O75161 1426 aaPredicted RBP15.82■□□□□ 0.12
HDAC1-206ENST00000476391 SHTN1A0MZ66 631 aa15.82■□□□□ 0.12
HDAC1-206ENST00000476391 CCDC175P0C221 793 aa15.82■□□□□ 0.12
HDAC1-206ENST00000476391 NF2P35240 595 aa15.82■□□□□ 0.12
HDAC1-206ENST00000476391 CRYMQ14894 314 aa15.82■□□□□ 0.12
HDAC1-206ENST00000476391 IGSF22Q8N9C0 903 aa15.82■□□□□ 0.12
HDAC1-206ENST00000476391 USP44Q9H0E7 712 aa15.82■□□□□ 0.12
HDAC1-206ENST00000476391 PCDHA7Q9UN72 937 aa15.82■□□□□ 0.12
HDAC1-206ENST00000476391 CRB1P82279 1406 aa15.81■□□□□ 0.12
HDAC1-206ENST00000476391 FSBPO95073 299 aa15.81■□□□□ 0.12
HDAC1-206ENST00000476391 IRAK1P51617 712 aa15.81■□□□□ 0.12
HDAC1-206ENST00000476391 NDUFA8P51970 172 aa15.81■□□□□ 0.12
HDAC1-206ENST00000476391 MYL5Q02045 173 aa15.81■□□□□ 0.12
HDAC1-206ENST00000476391 FLIIQ13045 1269 aa15.81■□□□□ 0.12
HDAC1-206ENST00000476391 COL9A3Q14050 684 aaPredicted RBP15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms