RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 GOLGA6L1Q8N7Z2 621 aa12.35□□□□□ -0.43
CHD3-208ENST00000470531 TRMT112Q9UI30 125 aaKnown RBP12.35□□□□□ -0.43
CHD3-208ENST00000470531 SBNO1A3KN83 1393 aa12.35□□□□□ -0.43
CHD3-208ENST00000470531 KIF24Q5T7B8 1368 aa12.35□□□□□ -0.43
CHD3-208ENST00000470531 NEURL1BA8MQ27 555 aa12.35□□□□□ -0.43
CHD3-208ENST00000470531 MARCH6O60337 910 aa12.35□□□□□ -0.43
CHD3-208ENST00000470531 ALDH1L1O75891 902 aa12.35□□□□□ -0.43
CHD3-208ENST00000470531 ADORA1P30542 326 aa12.35□□□□□ -0.43
CHD3-208ENST00000470531 IARSP41252 1262 aaKnown RBP12.35□□□□□ -0.43
CHD3-208ENST00000470531 LRRFIP1Q32MZ4 808 aaKnown RBP12.35□□□□□ -0.43
CHD3-208ENST00000470531 PPFIBP1Q86W92 1011 aa12.35□□□□□ -0.43
CHD3-208ENST00000470531 SMTNL1A8MU46 457 aa12.35□□□□□ -0.43
CHD3-208ENST00000470531 E7EWF7 191 aa12.35□□□□□ -0.43
CHD3-208ENST00000470531 TPM1P09493 284 aa12.35□□□□□ -0.43
CHD3-208ENST00000470531 LMAN1P49257 510 aa12.35□□□□□ -0.43
CHD3-208ENST00000470531 GYS2P54840 703 aa12.35□□□□□ -0.43
CHD3-208ENST00000470531 TOB2Q14106 344 aaPredicted RBP12.35□□□□□ -0.43
CHD3-208ENST00000470531 TSR1Q2NL82 804 aaKnown RBP12.35□□□□□ -0.43
CHD3-208ENST00000470531 CAGE1Q8TC20 777 aa12.35□□□□□ -0.43
CHD3-208ENST00000470531 ZSCAN16Q9H4T2 348 aaPredicted RBP12.35□□□□□ -0.43
CHD3-208ENST00000470531 CWC25Q9NXE8 425 aaPredicted RBP12.35□□□□□ -0.43
CHD3-208ENST00000470531 SLU7O95391 586 aaKnown RBP12.34□□□□□ -0.43
CHD3-208ENST00000470531 RHOXF2BP0C7M4 288 aa12.34□□□□□ -0.43
CHD3-208ENST00000470531 GRAMD1CQ8IYS0 662 aa12.34□□□□□ -0.43
CHD3-208ENST00000470531 KRT222Q8N1A0 295 aa12.34□□□□□ -0.43
CHD3-208ENST00000470531 TMEM87AQ8NBN3 555 aa12.34□□□□□ -0.43
CHD3-208ENST00000470531 RHOXF2Q9BQY4 288 aa12.34□□□□□ -0.43
CHD3-208ENST00000470531 PLEKHA4Q9H4M7 779 aa12.34□□□□□ -0.43
CHD3-208ENST00000470531 OGFRQ9NZT2 677 aa12.34□□□□□ -0.43
CHD3-208ENST00000470531 CTNNA3Q9UI47 895 aa12.34□□□□□ -0.43
CHD3-208ENST00000470531 PCDHA7Q9UN72 937 aa12.34□□□□□ -0.43
CHD3-208ENST00000470531 KIDINS220Q9ULH0 1771 aa12.34□□□□□ -0.43
CHD3-208ENST00000470531 NEXMIFQ5QGS0 1516 aa12.34□□□□□ -0.43
CHD3-208ENST00000470531 DLG5Q8TDM6 1919 aa12.34□□□□□ -0.43
CHD3-208ENST00000470531 PLEKHG3A1L390 1219 aa12.34□□□□□ -0.43
CHD3-208ENST00000470531 CLGNO14967 610 aa12.34□□□□□ -0.43
CHD3-208ENST00000470531 MATR3P43243 847 aaKnown RBP eCLIP12.34□□□□□ -0.433e-8■■■□□ 14.8
CHD3-208ENST00000470531 ZAP70P43403 619 aa12.34□□□□□ -0.43
CHD3-208ENST00000470531 KIF6Q6ZMV9 814 aa12.34□□□□□ -0.43
CHD3-208ENST00000470531 DHX58Q96C10 678 aa12.34□□□□□ -0.43
CHD3-208ENST00000470531 DRC1Q96MC2 740 aa12.34□□□□□ -0.43
CHD3-208ENST00000470531 NOL10Q9BSC4 688 aaKnown RBP12.34□□□□□ -0.43
CHD3-208ENST00000470531 HMG20BQ9P0W2 317 aa12.34□□□□□ -0.43
CHD3-208ENST00000470531 BCCIPQ9P287 314 aaKnown RBP eCLIP12.34□□□□□ -0.43
CHD3-208ENST00000470531 SLC12A7Q9Y666 1083 aa12.34□□□□□ -0.43
CHD3-208ENST00000470531 SEC31AO94979 1220 aaKnown RBP12.34□□□□□ -0.43
CHD3-208ENST00000470531 LRRC8AQ8IWT6 810 aa12.34□□□□□ -0.43
CHD3-208ENST00000470531 AXIN2Q9Y2T1 843 aa12.34□□□□□ -0.43
CHD3-208ENST00000470531 TTC21AQ8NDW8 1320 aa12.33□□□□□ -0.43
CHD3-208ENST00000470531 ZNF202O95125 648 aa12.33□□□□□ -0.44
CHD3-208ENST00000470531 FAM160A1Q05DH4 1040 aa12.33□□□□□ -0.44
CHD3-208ENST00000470531 TRIM22Q8IYM9 498 aa12.33□□□□□ -0.44
CHD3-208ENST00000470531 GPATCH11Q8N954 259 aa12.33□□□□□ -0.44
CHD3-208ENST00000470531 CCT6AP40227 531 aaKnown RBP12.33□□□□□ -0.44
CHD3-208ENST00000470531 ST3GAL1Q11201 340 aa12.33□□□□□ -0.44
CHD3-208ENST00000470531 AXDND1Q5T1B0 1012 aaPredicted RBP12.33□□□□□ -0.44
CHD3-208ENST00000470531 IFNL2Q8IZJ0 200 aa12.33□□□□□ -0.44
CHD3-208ENST00000470531 UBAC1Q9BSL1 405 aa12.33□□□□□ -0.44
CHD3-208ENST00000470531 PAXBP1Q9Y5B6 917 aa12.33□□□□□ -0.44
CHD3-208ENST00000470531 IGKV5-2P06315 115 aa12.33□□□□□ -0.44
CHD3-208ENST00000470531 JMYQ8N9B5 988 aa12.33□□□□□ -0.44
CHD3-208ENST00000470531 GOLPH3LQ9H4A5 285 aa12.33□□□□□ -0.44
CHD3-208ENST00000470531 REREQ9P2R6 1566 aa12.32□□□□□ -0.44
CHD3-208ENST00000470531 CTIFO43310 598 aaKnown RBP12.32□□□□□ -0.44
CHD3-208ENST00000470531 CASQ1P31415 396 aa12.32□□□□□ -0.44
CHD3-208ENST00000470531 CTDSPL2Q05D32 466 aa12.32□□□□□ -0.44
CHD3-208ENST00000470531 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.32□□□□□ -0.441e-6■■■□□ 16.4
CHD3-208ENST00000470531 IGSF1Q8N6C5 1336 aa12.32□□□□□ -0.44
CHD3-208ENST00000470531 CPS1P31327 1500 aa12.32□□□□□ -0.44
CHD3-208ENST00000470531 HSP90B2PQ58FF3 399 aa12.32□□□□□ -0.44
CHD3-208ENST00000470531 NCOA7Q8NI08 942 aa12.32□□□□□ -0.44
CHD3-208ENST00000470531 HSPD1P10809 573 aaKnown RBP12.32□□□□□ -0.44
CHD3-208ENST00000470531 MTX1Q13505 466 aa12.32□□□□□ -0.44
CHD3-208ENST00000470531 NEK11Q8NG66 645 aa12.32□□□□□ -0.44
CHD3-208ENST00000470531 NOC3LQ8WTT2 800 aaKnown RBP12.32□□□□□ -0.44
CHD3-208ENST00000470531 HOOK1Q9UJC3 728 aaKnown RBP12.32□□□□□ -0.44
CHD3-208ENST00000470531 ANKRD65E5RJM6 399 aa12.31□□□□□ -0.44
CHD3-208ENST00000470531 CASP1P29466 404 aa12.31□□□□□ -0.44
CHD3-208ENST00000470531 KMT5BQ4FZB7 885 aa12.31□□□□□ -0.44
CHD3-208ENST00000470531 CENPHQ9H3R5 247 aa12.31□□□□□ -0.44
CHD3-208ENST00000470531 ZCCHC17Q9NP64 241 aaKnown RBP12.31□□□□□ -0.44
CHD3-208ENST00000470531 FANCCQ00597 558 aa12.31□□□□□ -0.44
CHD3-208ENST00000470531 CCDC102BQ68D86 513 aa12.31□□□□□ -0.44
CHD3-208ENST00000470531 CTAGE5O15320 804 aa12.31□□□□□ -0.44
CHD3-208ENST00000470531 SART3Q15020 963 aaKnown RBP12.31□□□□□ -0.44
CHD3-208ENST00000470531 KBTBD3Q8NAB2 608 aa12.31□□□□□ -0.44
CHD3-208ENST00000470531 DENND2AQ9ULE3 1009 aa12.31□□□□□ -0.44
CHD3-208ENST00000470531 POLR2DO15514 142 aaKnown RBP12.3□□□□□ -0.44
CHD3-208ENST00000470531 RNF113AO15541 343 aaKnown RBP12.3□□□□□ -0.44
CHD3-208ENST00000470531 ZBTB43O43298 467 aa12.3□□□□□ -0.44
CHD3-208ENST00000470531 POLA2Q14181 598 aa12.3□□□□□ -0.44
CHD3-208ENST00000470531 SMYD4Q8IYR2 804 aaPredicted RBP12.3□□□□□ -0.44
CHD3-208ENST00000470531 RGS22Q8NE09 1264 aa12.3□□□□□ -0.44
CHD3-208ENST00000470531 CAPZA3Q96KX2 299 aa12.3□□□□□ -0.44
CHD3-208ENST00000470531 FEZ1Q99689 392 aa12.3□□□□□ -0.44
CHD3-208ENST00000470531 METTL22Q9BUU2 404 aaPredicted RBP12.3□□□□□ -0.44
CHD3-208ENST00000470531 ZHX3Q9H4I2 956 aa12.3□□□□□ -0.44
CHD3-208ENST00000470531 GPAA1O43292 621 aa12.3□□□□□ -0.44
CHD3-208ENST00000470531 HMGB1P09429 215 aaKnown RBP12.3□□□□□ -0.44
CHD3-208ENST00000470531 ATP2B2Q01814 1243 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 182.6 ms