RNA–Protein interactions for RNA: ENST00000409769.6

CLK1-203, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 1,192 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-203ENST00000409769 POLIQ9UNA4 740 aa8.19□□□□□ -1.1
CLK1-203ENST00000409769 AAMPQ13685 434 aa8.18□□□□□ -1.1
CLK1-203ENST00000409769 TRIM42Q8IWZ5 723 aa8.18□□□□□ -1.1
CLK1-203ENST00000409769 SLC7A3Q8WY07 619 aa8.18□□□□□ -1.1
CLK1-203ENST00000409769 NXPE3Q969Y0 559 aa8.18□□□□□ -1.1
CLK1-203ENST00000409769 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.17□□□□□ -1.1
CLK1-203ENST00000409769 TNFRSF21O75509 655 aa8.17□□□□□ -1.1
CLK1-203ENST00000409769 TGFB1P01137 390 aa8.17□□□□□ -1.1
CLK1-203ENST00000409769 ACPPP15309 386 aa8.17□□□□□ -1.1
CLK1-203ENST00000409769 NLRP12P59046 1061 aa8.17□□□□□ -1.1
CLK1-203ENST00000409769 IKBKEQ14164 716 aa8.17□□□□□ -1.1
CLK1-203ENST00000409769 MCTP1Q6DN14 999 aa8.17□□□□□ -1.1
CLK1-203ENST00000409769 RETREG2Q8NC44 543 aa8.17□□□□□ -1.1
CLK1-203ENST00000409769 GIMAP7Q8NHV1 300 aa8.17□□□□□ -1.1
CLK1-203ENST00000409769 HMX2A2RU54 273 aa8.16□□□□□ -1.1
CLK1-203ENST00000409769 A6NHS1 94 aa8.16□□□□□ -1.1
CLK1-203ENST00000409769 GAS2O43903 313 aaKnown RBP8.16□□□□□ -1.1
CLK1-203ENST00000409769 BMP3P12645 472 aa8.16□□□□□ -1.1
CLK1-203ENST00000409769 FKBP4Q02790 459 aaKnown RBP eCLIP8.16□□□□□ -1.1
CLK1-203ENST00000409769 BEND4Q6ZU67 534 aa8.16□□□□□ -1.1
CLK1-203ENST00000409769 ZKSCAN3Q9BRR0 538 aa8.16□□□□□ -1.1
CLK1-203ENST00000409769 BHLHE41Q9C0J9 482 aaPredicted RBP8.16□□□□□ -1.1
CLK1-203ENST00000409769 KCNF1Q9H3M0 494 aa8.16□□□□□ -1.1
CLK1-203ENST00000409769 CYP4F12Q9HCS2 524 aa8.16□□□□□ -1.1
CLK1-203ENST00000409769 AMOTL2Q9Y2J4 779 aa8.16□□□□□ -1.1
CLK1-203ENST00000409769 COL17A1Q9UMD9 1497 aaPredicted RBP8.15□□□□□ -1.1
CLK1-203ENST00000409769 EREGO14944 169 aa8.15□□□□□ -1.1
CLK1-203ENST00000409769 PREPP48147 710 aa8.15□□□□□ -1.1
CLK1-203ENST00000409769 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.15□□□□□ -1.1
CLK1-203ENST00000409769 CPSF6Q16630 551 aaKnown RBP eCLIP8.14□□□□□ -1.11
CLK1-203ENST00000409769 NUTM2GQ5VZR2 741 aa8.14□□□□□ -1.11
CLK1-203ENST00000409769 B4GALNT3Q6L9W6 998 aa8.14□□□□□ -1.11
CLK1-203ENST00000409769 VN1R5Q7Z5H4 357 aa8.14□□□□□ -1.11
CLK1-203ENST00000409769 HHIPQ96QV1 700 aa8.14□□□□□ -1.11
CLK1-203ENST00000409769 SUGCTQ9HAC7 445 aa8.14□□□□□ -1.11
CLK1-203ENST00000409769 KRTAP9-6A0A140TA67 174 aa8.13□□□□□ -1.11
CLK1-203ENST00000409769 SOX1O00570 391 aaPredicted RBP8.13□□□□□ -1.11
CLK1-203ENST00000409769 PAX4O43316 350 aa8.13□□□□□ -1.11
CLK1-203ENST00000409769 SPINK2P20155 84 aa8.13□□□□□ -1.11
CLK1-203ENST00000409769 IRAK1P51617 712 aa8.13□□□□□ -1.11
CLK1-203ENST00000409769 PHLDB3Q6NSJ2 640 aa8.13□□□□□ -1.11
CLK1-203ENST00000409769 GJD3Q8N144 294 aa8.13□□□□□ -1.11
CLK1-203ENST00000409769 SMG8Q8ND04 991 aaKnown RBP8.13□□□□□ -1.11
CLK1-203ENST00000409769 TMPRSS13Q9BYE2 586 aa8.13□□□□□ -1.11
CLK1-203ENST00000409769 PRR19A6NJB7 356 aa8.12□□□□□ -1.11
CLK1-203ENST00000409769 TRPA1O75762 1119 aa8.12□□□□□ -1.11
CLK1-203ENST00000409769 MED26O95402 600 aa8.12□□□□□ -1.11
CLK1-203ENST00000409769 GP2P55259 537 aaKnown RBP8.12□□□□□ -1.11
CLK1-203ENST00000409769 MTMR3Q13615 1198 aa8.12□□□□□ -1.11
CLK1-203ENST00000409769 HP1BP3Q5SSJ5 553 aaPredicted RBP8.12□□□□□ -1.11
CLK1-203ENST00000409769 DTX1Q86Y01 620 aa8.12□□□□□ -1.11
CLK1-203ENST00000409769 FZD6O60353 706 aa8.11□□□□□ -1.11
CLK1-203ENST00000409769 MAP4P27816 1152 aaKnown RBP8.11□□□□□ -1.11
CLK1-203ENST00000409769 EXOSC6Q5RKV6 272 aaKnown RBP8.11□□□□□ -1.11
CLK1-203ENST00000409769 SHKBP1Q8TBC3 707 aa8.11□□□□□ -1.11
CLK1-203ENST00000409769 ASAP3Q8TDY4 903 aa8.11□□□□□ -1.11
CLK1-203ENST00000409769 ZFYVE1Q9HBF4 777 aa8.11□□□□□ -1.11
CLK1-203ENST00000409769 EGFL7Q9UHF1 273 aa8.11□□□□□ -1.11
CLK1-203ENST00000409769 FOXD3Q9UJU5 478 aaPredicted RBP8.11□□□□□ -1.11
CLK1-203ENST00000409769 LOC100289279A0A1B0GTE1 492 aa8.1□□□□□ -1.11
CLK1-203ENST00000409769 TIAF1O95411 115 aa8.1□□□□□ -1.11
CLK1-203ENST00000409769 NEFLP07196 543 aa8.1□□□□□ -1.11
CLK1-203ENST00000409769 ESRRAP11474 423 aaPredicted RBP8.1□□□□□ -1.11
CLK1-203ENST00000409769 C12orf50Q8NA57 414 aaPredicted RBP8.1□□□□□ -1.11
CLK1-203ENST00000409769 YIPF2Q9BWQ6 316 aa8.1□□□□□ -1.11
CLK1-203ENST00000409769 USP26Q9BXU7 913 aa8.1□□□□□ -1.11
CLK1-203ENST00000409769 ZFYVE28Q9HCC9 887 aa8.1□□□□□ -1.11
CLK1-203ENST00000409769 WNT11O96014 354 aa8.09□□□□□ -1.11
CLK1-203ENST00000409769 PEAR1Q5VY43 1037 aaPredicted RBP8.09□□□□□ -1.11
CLK1-203ENST00000409769 CARNS1A5YM72 827 aa8.08□□□□□ -1.12
CLK1-203ENST00000409769 ABL1P00519 1130 aa8.08□□□□□ -1.12
CLK1-203ENST00000409769 RXRBP28702 533 aa8.08□□□□□ -1.12
CLK1-203ENST00000409769 KRTAP4-12Q9BQ66 201 aa8.08□□□□□ -1.12
CLK1-203ENST00000409769 METTL22Q9BUU2 404 aaPredicted RBP8.08□□□□□ -1.12
CLK1-203ENST00000409769 TRAIPQ9BWF2 469 aa8.08□□□□□ -1.12
CLK1-203ENST00000409769 ATG3Q9NT62 314 aa8.08□□□□□ -1.12
CLK1-203ENST00000409769 PIM2Q9P1W9 311 aa8.08□□□□□ -1.12
CLK1-203ENST00000409769 WDR64B1ANS9 1081 aa8.07□□□□□ -1.12
CLK1-203ENST00000409769 HGSNATQ68CP4 663 aa8.07□□□□□ -1.12
CLK1-203ENST00000409769 PAOXQ6QHF9 649 aa8.07□□□□□ -1.12
CLK1-203ENST00000409769 DDX54Q8TDD1 881 aaKnown RBP8.07□□□□□ -1.12
CLK1-203ENST00000409769 CLEC4MQ9H2X3 399 aaPredicted RBP8.07□□□□□ -1.12
CLK1-203ENST00000409769 OAS3Q9Y6K5 1087 aaKnown RBP8.07□□□□□ -1.12
CLK1-203ENST00000409769 CCDC180Q9P1Z9 1646 aa8.07□□□□□ -1.12
CLK1-203ENST00000409769 FAM95CA0A1B0GW59 222 aa8.06□□□□□ -1.12
CLK1-203ENST00000409769 BRD1O95696 1058 aa8.06□□□□□ -1.12
CLK1-203ENST00000409769 CYP11A1P05108 521 aa8.06□□□□□ -1.12
CLK1-203ENST00000409769 TXKP42681 527 aa8.06□□□□□ -1.12
CLK1-203ENST00000409769 USP11P51784 963 aa8.06□□□□□ -1.12
CLK1-203ENST00000409769 GSTM4Q03013 218 aa8.06□□□□□ -1.12
CLK1-203ENST00000409769 SGO2Q562F6 1265 aa8.06□□□□□ -1.12
CLK1-203ENST00000409769 CCNJLQ8IV13 435 aa8.06□□□□□ -1.12
CLK1-203ENST00000409769 GALNT12Q8IXK2 581 aa8.06□□□□□ -1.12
CLK1-203ENST00000409769 MFSD14AQ96MC6 490 aa8.06□□□□□ -1.12
CLK1-203ENST00000409769 CCDC87Q9NVE4 849 aa8.06□□□□□ -1.12
CLK1-203ENST00000409769 LEMD3Q9Y2U8 911 aa8.06□□□□□ -1.12
CLK1-203ENST00000409769 A0A096LPE4 126 aa8.05□□□□□ -1.12
CLK1-203ENST00000409769 A0A1W2PPZ6 126 aa8.05□□□□□ -1.12
CLK1-203ENST00000409769 OSBPL1AQ9BXW6 950 aa8.05□□□□□ -1.12
CLK1-203ENST00000409769 GOLGA2P5Q9HBQ8 144 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms