RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 POLR1AO95602 1720 aaPredicted RBP10.61□□□□□ -0.71
LIG4-202ENST00000405925 MMP10P09238 476 aa10.61□□□□□ -0.71
LIG4-202ENST00000405925 KIF5BP33176 963 aa10.61□□□□□ -0.71
LIG4-202ENST00000405925 TXNRD1Q16881 649 aa10.61□□□□□ -0.71
LIG4-202ENST00000405925 IFIT1BQ5T764 474 aaKnown RBP10.61□□□□□ -0.71
LIG4-202ENST00000405925 NARFQ9UHQ1 456 aa10.61□□□□□ -0.71
LIG4-202ENST00000405925 COL15A1P39059 1388 aa10.61□□□□□ -0.71
LIG4-202ENST00000405925 AK2P54819 239 aa10.61□□□□□ -0.71
LIG4-202ENST00000405925 BARGINQ6ZT62 677 aa10.61□□□□□ -0.71
LIG4-202ENST00000405925 HOMER1Q86YM7 354 aa10.61□□□□□ -0.71
LIG4-202ENST00000405925 AATFQ9NY61 560 aaKnown RBP eCLIP10.61□□□□□ -0.71
LIG4-202ENST00000405925 GTF2IP78347 998 aa10.61□□□□□ -0.71
LIG4-202ENST00000405925 CEMIPQ8WUJ3 1361 aa10.6□□□□□ -0.71
LIG4-202ENST00000405925 STX6O43752 255 aa10.6□□□□□ -0.71
LIG4-202ENST00000405925 DHX32Q7L7V1 743 aaKnown RBP10.6□□□□□ -0.71
LIG4-202ENST00000405925 GDPD2Q9HCC8 539 aa10.6□□□□□ -0.71
LIG4-202ENST00000405925 GJA3Q9Y6H8 435 aa10.6□□□□□ -0.71
LIG4-202ENST00000405925 ADCY9O60503 1353 aa10.6□□□□□ -0.71
LIG4-202ENST00000405925 PPIP5K2O43314 1243 aa10.6□□□□□ -0.71
LIG4-202ENST00000405925 ARHGEF1Q92888 912 aaKnown RBP10.6□□□□□ -0.71
LIG4-202ENST00000405925 SEC62Q99442 399 aaKnown RBP10.6□□□□□ -0.71
LIG4-202ENST00000405925 TFIP11Q9UBB9 837 aaKnown RBP10.6□□□□□ -0.71
LIG4-202ENST00000405925 BCS1LQ9Y276 419 aa10.6□□□□□ -0.71
LIG4-202ENST00000405925 SASH1O94885 1247 aa10.6□□□□□ -0.71
LIG4-202ENST00000405925 MFSD14BQ5SR56 506 aa10.6□□□□□ -0.71
LIG4-202ENST00000405925 MEGF6O75095 1541 aa10.6□□□□□ -0.71
LIG4-202ENST00000405925 A0A0D9SFI3 127 aa10.59□□□□□ -0.71
LIG4-202ENST00000405925 PRDM1O75626 825 aa10.59□□□□□ -0.71
LIG4-202ENST00000405925 CIAO1O76071 339 aa10.59□□□□□ -0.71
LIG4-202ENST00000405925 NLRP5P59047 1200 aa10.59□□□□□ -0.71
LIG4-202ENST00000405925 APOBRQ0VD83 1088 aa10.59□□□□□ -0.71
LIG4-202ENST00000405925 ANKRD20A12PQ8NF67 263 aa10.59□□□□□ -0.71
LIG4-202ENST00000405925 TNPO1Q92973 898 aaKnown RBP10.59□□□□□ -0.71
LIG4-202ENST00000405925 ZKSCAN3Q9BRR0 538 aa10.59□□□□□ -0.71
LIG4-202ENST00000405925 SAP30BPQ9UHR5 308 aaKnown RBP10.59□□□□□ -0.71
LIG4-202ENST00000405925 RTN1Q16799 776 aa10.59□□□□□ -0.71
LIG4-202ENST00000405925 TMTC2Q8N394 836 aa10.59□□□□□ -0.71
LIG4-202ENST00000405925 ZNF804BA4D1E1 1349 aa10.59□□□□□ -0.71
LIG4-202ENST00000405925 B4E1Z4 1266 aa10.59□□□□□ -0.71
LIG4-202ENST00000405925 SLC27A2O14975 620 aa10.59□□□□□ -0.71
LIG4-202ENST00000405925 RXRAP19793 462 aa10.59□□□□□ -0.71
LIG4-202ENST00000405925 UBE4AQ14139 1066 aa10.59□□□□□ -0.71
LIG4-202ENST00000405925 CNKSR1Q969H4 720 aa10.59□□□□□ -0.71
LIG4-202ENST00000405925 NAP1L5Q96NT1 182 aaPredicted RBP10.59□□□□□ -0.71
LIG4-202ENST00000405925 HAUS7Q99871 368 aa10.59□□□□□ -0.71
LIG4-202ENST00000405925 ATP2B4P23634 1241 aa10.58□□□□□ -0.71
LIG4-202ENST00000405925 ZNF76P36508 570 aa10.58□□□□□ -0.71
LIG4-202ENST00000405925 POLA2Q14181 598 aa10.58□□□□□ -0.71
LIG4-202ENST00000405925 DOK7Q18PE1 504 aa10.58□□□□□ -0.71
LIG4-202ENST00000405925 OLFM4Q6UX06 510 aa10.58□□□□□ -0.71
LIG4-202ENST00000405925 TNMDQ9H2S6 317 aa10.58□□□□□ -0.71
LIG4-202ENST00000405925 MAP2P11137 1827 aaKnown RBP10.58□□□□□ -0.72
LIG4-202ENST00000405925 SNAP23O00161 211 aa10.58□□□□□ -0.72
LIG4-202ENST00000405925 PDE6AP16499 860 aa10.58□□□□□ -0.72
LIG4-202ENST00000405925 NKX1-1Q15270 411 aaPredicted RBP10.58□□□□□ -0.72
LIG4-202ENST00000405925 PI16Q6UXB8 463 aa10.58□□□□□ -0.72
LIG4-202ENST00000405925 ISCA1Q9BUE6 129 aa10.58□□□□□ -0.72
LIG4-202ENST00000405925 FAM13BQ9NYF5 915 aa10.58□□□□□ -0.72
LIG4-202ENST00000405925 STAP2Q9UGK3 403 aa10.58□□□□□ -0.72
LIG4-202ENST00000405925 TPM2P07951 284 aa10.58□□□□□ -0.72
LIG4-202ENST00000405925 TBC1D9BQ66K14 1250 aa10.58□□□□□ -0.72
LIG4-202ENST00000405925 SNX21Q969T3 373 aa10.58□□□□□ -0.72
LIG4-202ENST00000405925 SCAND2PQ9GZW5 306 aaPredicted RBP10.58□□□□□ -0.72
LIG4-202ENST00000405925 CCDC194A0A1B0GVG4 234 aa10.58□□□□□ -0.72
LIG4-202ENST00000405925 RBM25P49756 843 aaKnown RBP10.58□□□□□ -0.72
LIG4-202ENST00000405925 WDR78Q5VTH9 848 aa10.58□□□□□ -0.72
LIG4-202ENST00000405925 RUFY3Q7L099 469 aa10.58□□□□□ -0.72
LIG4-202ENST00000405925 TTC6Q86TZ1 520 aa10.58□□□□□ -0.72
LIG4-202ENST00000405925 PCMTD1Q96MG8 357 aaPredicted RBP10.58□□□□□ -0.72
LIG4-202ENST00000405925 ATF5Q9Y2D1 282 aaPredicted RBP10.58□□□□□ -0.72
LIG4-202ENST00000405925 IQSEC2Q5JU85 1478 aa10.57□□□□□ -0.72
LIG4-202ENST00000405925 SSBP05455 408 aaKnown RBP eCLIP10.57□□□□□ -0.72
LIG4-202ENST00000405925 KRT18P05783 430 aaKnown RBP10.57□□□□□ -0.72
LIG4-202ENST00000405925 TBC1D22AQ8WUA7 517 aa10.57□□□□□ -0.72
LIG4-202ENST00000405925 GPR108Q9NPR9 543 aa10.57□□□□□ -0.72
LIG4-202ENST00000405925 SNX14Q9Y5W7 946 aa10.57□□□□□ -0.72
LIG4-202ENST00000405925 TPM3P06753 285 aa10.57□□□□□ -0.72
LIG4-202ENST00000405925 EIF5P55010 431 aaKnown RBP10.57□□□□□ -0.72
LIG4-202ENST00000405925 EN1Q05925 392 aaPredicted RBP10.57□□□□□ -0.72
LIG4-202ENST00000405925 ITPK1Q13572 414 aa10.57□□□□□ -0.72
LIG4-202ENST00000405925 SUPT20HQ8NEM7 779 aa10.57□□□□□ -0.72
LIG4-202ENST00000405925 ADRA2BP18089 450 aa10.57□□□□□ -0.72
LIG4-202ENST00000405925 ALG1Q9BT22 464 aa10.57□□□□□ -0.72
LIG4-202ENST00000405925 NAT10Q9H0A0 1025 aaKnown RBP10.57□□□□□ -0.72
LIG4-202ENST00000405925 TTF2Q9UNY4 1162 aaKnown RBP10.57□□□□□ -0.72
LIG4-202ENST00000405925 XDHP47989 1333 aa10.56□□□□□ -0.72
LIG4-202ENST00000405925 COL3A1P02461 1466 aaPredicted RBP10.56□□□□□ -0.72
LIG4-202ENST00000405925 TPM1P09493 284 aa10.56□□□□□ -0.72
LIG4-202ENST00000405925 MTX1Q13505 466 aa10.56□□□□□ -0.72
LIG4-202ENST00000405925 TSR1Q2NL82 804 aaKnown RBP10.56□□□□□ -0.72
LIG4-202ENST00000405925 SLC27A3Q5K4L6 730 aa10.56□□□□□ -0.72
LIG4-202ENST00000405925 NIM1KQ8IY84 436 aa10.56□□□□□ -0.72
LIG4-202ENST00000405925 ZHX3Q9H4I2 956 aa10.56□□□□□ -0.72
LIG4-202ENST00000405925 MAPKAPK5Q8IW41 473 aa10.56□□□□□ -0.72
LIG4-202ENST00000405925 NUP62CLQ9H1M0 184 aa10.56□□□□□ -0.72
LIG4-202ENST00000405925 OSBPL3Q9H4L5 887 aa10.56□□□□□ -0.72
LIG4-202ENST00000405925 ANTXR1Q9H6X2 564 aa10.56□□□□□ -0.72
LIG4-202ENST00000405925 CLEC11AQ9Y240 323 aa10.56□□□□□ -0.72
LIG4-202ENST00000405925 MAST3O60307 1309 aa10.56□□□□□ -0.72
LIG4-202ENST00000405925 PPEF1O14829 653 aaPredicted RBP10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms