RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 SLC15A2Q16348 729 aa10.58□□□□□ -0.72
LIMCH1-202ENST00000381753 MTHFSDQ2M296 383 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-202ENST00000381753 GANCQ8TET4 914 aa10.58□□□□□ -0.72
LIMCH1-202ENST00000381753 SMARCE1Q969G3 411 aa10.58□□□□□ -0.72
LIMCH1-202ENST00000381753 SRP68Q9UHB9 627 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-202ENST00000381753 MAP3K19Q56UN5 1328 aa10.58□□□□□ -0.72
LIMCH1-202ENST00000381753 GRM8O00222 908 aa10.58□□□□□ -0.72
LIMCH1-202ENST00000381753 PLBD2Q8NHP8 589 aa10.58□□□□□ -0.72
LIMCH1-202ENST00000381753 GZF1Q9H116 711 aaPredicted RBP10.58□□□□□ -0.72
LIMCH1-202ENST00000381753 LMNB1P20700 586 aa10.58□□□□□ -0.72
LIMCH1-202ENST00000381753 IGFBP4P22692 258 aa10.58□□□□□ -0.72
LIMCH1-202ENST00000381753 TCERG1LQ5VWI1 586 aa10.58□□□□□ -0.72
LIMCH1-202ENST00000381753 JAKMIP1Q96N16 626 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-202ENST00000381753 DACH1Q9UI36 760 aa10.58□□□□□ -0.72
LIMCH1-202ENST00000381753 IDEP14735 1019 aa10.57□□□□□ -0.72
LIMCH1-202ENST00000381753 AKNAD1Q5T1N1 836 aa10.57□□□□□ -0.72
LIMCH1-202ENST00000381753 WDR17Q8IZU2 1322 aa10.57□□□□□ -0.72
LIMCH1-202ENST00000381753 NSD2O96028 1365 aa10.57□□□□□ -0.72
LIMCH1-202ENST00000381753 ANKRD36BQ8N2N9 1353 aa10.57□□□□□ -0.72
LIMCH1-202ENST00000381753 AEBP1Q8IUX7 1158 aa10.57□□□□□ -0.72
LIMCH1-202ENST00000381753 RPS6KC1Q96S38 1066 aa10.57□□□□□ -0.72
LIMCH1-202ENST00000381753 NLRP1Q9C000 1473 aa10.57□□□□□ -0.72
LIMCH1-202ENST00000381753 SORBS3O60504 671 aa10.57□□□□□ -0.72
LIMCH1-202ENST00000381753 CT47B1P0C2W7 299 aaPredicted RBP10.57□□□□□ -0.72
LIMCH1-202ENST00000381753 CTNNA2P26232 953 aa10.57□□□□□ -0.72
LIMCH1-202ENST00000381753 IGBP1P78318 339 aa10.57□□□□□ -0.72
LIMCH1-202ENST00000381753 MAPKAPK5Q8IW41 473 aa10.57□□□□□ -0.72
LIMCH1-202ENST00000381753 OTUD5Q96G74 571 aa10.57□□□□□ -0.72
LIMCH1-202ENST00000381753 CSRNP1Q96S65 589 aa10.57□□□□□ -0.72
LIMCH1-202ENST00000381753 MMRN2Q9H8L6 949 aa10.57□□□□□ -0.72
LIMCH1-202ENST00000381753 RTEL1Q9NZ71 1219 aa10.57□□□□□ -0.72
LIMCH1-202ENST00000381753 XDHP47989 1333 aa10.57□□□□□ -0.72
LIMCH1-202ENST00000381753 PLEKHG1Q9ULL1 1385 aa10.57□□□□□ -0.72
LIMCH1-202ENST00000381753 MAGI2Q86UL8 1455 aa10.57□□□□□ -0.72
LIMCH1-202ENST00000381753 PCF11O94913 1555 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-202ENST00000381753 CD2APQ9Y5K6 639 aa10.57□□□□□ -0.72
LIMCH1-202ENST00000381753 SEC24BO95487 1268 aa10.56□□□□□ -0.72
LIMCH1-202ENST00000381753 ZFYP08048 801 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-202ENST00000381753 USH1GQ495M9 461 aa10.56□□□□□ -0.72
LIMCH1-202ENST00000381753 RPAP2Q8IXW5 612 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-202ENST00000381753 YAF2Q8IY57 180 aa10.56□□□□□ -0.72
LIMCH1-202ENST00000381753 ELMOD1Q8N336 334 aa10.56□□□□□ -0.72
LIMCH1-202ENST00000381753 IFT74Q96LB3 600 aa10.56□□□□□ -0.72
LIMCH1-202ENST00000381753 AATFQ9NY61 560 aaKnown RBP eCLIP10.56□□□□□ -0.72
LIMCH1-202ENST00000381753 M0R2C6 588 aa10.56□□□□□ -0.72
LIMCH1-202ENST00000381753 ME1P48163 572 aa10.56□□□□□ -0.72
LIMCH1-202ENST00000381753 CAGE1Q8TC20 777 aa10.56□□□□□ -0.72
LIMCH1-202ENST00000381753 RIOK3O14730 519 aaKnown RBP10.56□□□□□ -0.72
LIMCH1-202ENST00000381753 TGFBRAP1Q8WUH2 860 aa10.56□□□□□ -0.72
LIMCH1-202ENST00000381753 CNNM2Q9H8M5 875 aa10.56□□□□□ -0.72
LIMCH1-202ENST00000381753 ATP7AQ04656 1500 aa10.56□□□□□ -0.72
LIMCH1-202ENST00000381753 PRXQ9BXM0 1461 aa10.56□□□□□ -0.72
LIMCH1-202ENST00000381753 KIF4BQ2VIQ3 1234 aa10.56□□□□□ -0.72
LIMCH1-202ENST00000381753 ODR4Q5SWX8 454 aa10.56□□□□□ -0.72
LIMCH1-202ENST00000381753 DDX39AO00148 427 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-202ENST00000381753 TMOD1P28289 359 aa10.55□□□□□ -0.72
LIMCH1-202ENST00000381753 OTUD6BQ8N6M0 293 aa10.55□□□□□ -0.72
LIMCH1-202ENST00000381753 HTATIP2Q9BUP3 242 aa10.55□□□□□ -0.72
LIMCH1-202ENST00000381753 PDRG1Q9NUG6 133 aa10.55□□□□□ -0.72
LIMCH1-202ENST00000381753 THOC2Q8NI27 1593 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-202ENST00000381753 CFAP43Q8NDM7 1665 aa10.55□□□□□ -0.72
LIMCH1-202ENST00000381753 ACTN1P12814 892 aa10.55□□□□□ -0.72
LIMCH1-202ENST00000381753 SEPT7Q16181 437 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-202ENST00000381753 INF2Q27J81 1249 aa10.55□□□□□ -0.72
LIMCH1-202ENST00000381753 AMPD3Q01432 767 aa10.55□□□□□ -0.72
LIMCH1-202ENST00000381753 STRN3Q13033 797 aa10.55□□□□□ -0.72
LIMCH1-202ENST00000381753 ADD3Q9UEY8 706 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-202ENST00000381753 TESPA1A2RU30 521 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-202ENST00000381753 CHMP2AO43633 222 aa10.55□□□□□ -0.72
LIMCH1-202ENST00000381753 DEKP35659 375 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-202ENST00000381753 SLC9C1Q4G0N8 1177 aa10.55□□□□□ -0.72
LIMCH1-202ENST00000381753 CCDC191Q8NCU4 936 aa10.55□□□□□ -0.72
LIMCH1-202ENST00000381753 PNMA2Q9UL42 364 aa10.55□□□□□ -0.72
LIMCH1-202ENST00000381753 ARAP3Q8WWN8 1544 aa10.55□□□□□ -0.72
LIMCH1-202ENST00000381753 SETQ01105 290 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-202ENST00000381753 AOC3Q16853 763 aa10.55□□□□□ -0.72
LIMCH1-202ENST00000381753 MFSD1Q9H3U5 465 aa10.55□□□□□ -0.72
LIMCH1-202ENST00000381753 ASAP1Q9ULH1 1129 aa10.55□□□□□ -0.72
LIMCH1-202ENST00000381753 KIAA0556O60303 1618 aa10.54□□□□□ -0.72
LIMCH1-202ENST00000381753 CFBP00751 764 aa10.54□□□□□ -0.72
LIMCH1-202ENST00000381753 CHRNA5P30532 468 aa10.54□□□□□ -0.72
LIMCH1-202ENST00000381753 MICU3Q86XE3 530 aa10.54□□□□□ -0.72
LIMCH1-202ENST00000381753 KRT13P13646 458 aa10.54□□□□□ -0.72
LIMCH1-202ENST00000381753 CERKLQ49MI3 558 aaPredicted RBP10.54□□□□□ -0.72
LIMCH1-202ENST00000381753 NCOA7Q8NI08 942 aa10.54□□□□□ -0.72
LIMCH1-202ENST00000381753 EXOC4Q96A65 974 aa10.54□□□□□ -0.72
LIMCH1-202ENST00000381753 LRRC27Q9C0I9 530 aa10.54□□□□□ -0.72
LIMCH1-202ENST00000381753 ALDH1L1O75891 902 aa10.54□□□□□ -0.72
LIMCH1-202ENST00000381753 NBPF7P0C2Y1 421 aaPredicted RBP10.54□□□□□ -0.72
LIMCH1-202ENST00000381753 LMAN1P49257 510 aa10.54□□□□□ -0.72
LIMCH1-202ENST00000381753 NEK4P51957 841 aa10.54□□□□□ -0.72
LIMCH1-202ENST00000381753 RUFY4Q6ZNE9 571 aa10.54□□□□□ -0.72
LIMCH1-202ENST00000381753 TXLNBQ8N3L3 684 aa10.54□□□□□ -0.72
LIMCH1-202ENST00000381753 ALS2CR12Q96Q35 445 aa10.54□□□□□ -0.72
LIMCH1-202ENST00000381753 UNC13AQ9UPW8 1703 aa10.54□□□□□ -0.72
LIMCH1-202ENST00000381753 MACROD2A1Z1Q3 448 aa10.54□□□□□ -0.72
LIMCH1-202ENST00000381753 FCGRTP55899 365 aa10.54□□□□□ -0.72
LIMCH1-202ENST00000381753 ZRSR2Q15696 482 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-202ENST00000381753 FAM13AO94988 1023 aa10.53□□□□□ -0.72
LIMCH1-202ENST00000381753 MIGA2Q7L4E1 593 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms