RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 XAGE2Q96GT9 111 aa25.53■■□□□ 1.68
TRIM54-202ENST00000380075 CTSWP56202 376 aa25.53■■□□□ 1.68
TRIM54-202ENST00000380075 LARP1BQ659C4 914 aaKnown RBP25.53■■□□□ 1.68
TRIM54-202ENST00000380075 TRIM44Q96DX7 344 aaPredicted RBP25.53■■□□□ 1.68
TRIM54-202ENST00000380075 SERPINB2P05120 415 aa25.52■■□□□ 1.68
TRIM54-202ENST00000380075 TTLL11Q8NHH1 800 aa25.52■■□□□ 1.68
TRIM54-202ENST00000380075 CNPY2Q9Y2B0 182 aa25.52■■□□□ 1.68
TRIM54-202ENST00000380075 CARMIL3Q8ND23 1372 aa25.52■■□□□ 1.68
TRIM54-202ENST00000380075 SYCE3A1L190 88 aa25.51■■□□□ 1.67
TRIM54-202ENST00000380075 ANKRD18BA2A2Z9 1011 aa25.51■■□□□ 1.67
TRIM54-202ENST00000380075 SUSD4Q5VX71 490 aa25.51■■□□□ 1.67
TRIM54-202ENST00000380075 GDPD2Q9HCC8 539 aa25.51■■□□□ 1.67
TRIM54-202ENST00000380075 RIC1Q4ADV7 1423 aa25.51■■□□□ 1.67
TRIM54-202ENST00000380075 FOXD4L6Q3SYB3 417 aaPredicted RBP25.51■■□□□ 1.67
TRIM54-202ENST00000380075 FOXD4L3Q6VB84 417 aaPredicted RBP25.51■■□□□ 1.67
TRIM54-202ENST00000380075 RBSNQ9H1K0 784 aa25.51■■□□□ 1.67
TRIM54-202ENST00000380075 RIPOR2Q9Y4F9 1068 aa25.51■■□□□ 1.67
TRIM54-202ENST00000380075 MAST3O60307 1309 aa25.5■■□□□ 1.67
TRIM54-202ENST00000380075 LETM1O95202 739 aaPredicted RBP25.5■■□□□ 1.67
TRIM54-202ENST00000380075 CHGBP05060 677 aa25.5■■□□□ 1.67
TRIM54-202ENST00000380075 VPS37CA5D8V6 355 aaPredicted RBP25.49■■□□□ 1.67
TRIM54-202ENST00000380075 IRS4O14654 1257 aaPredicted RBP25.49■■□□□ 1.67
TRIM54-202ENST00000380075 GADD45BO75293 160 aaPredicted RBP25.49■■□□□ 1.67
TRIM54-202ENST00000380075 HSPD1P10809 573 aaKnown RBP25.49■■□□□ 1.67
TRIM54-202ENST00000380075 ITGA6P23229 1130 aa25.49■■□□□ 1.67
TRIM54-202ENST00000380075 COL9A3Q14050 684 aaPredicted RBP25.49■■□□□ 1.67
TRIM54-202ENST00000380075 PARP10Q53GL7 1025 aa25.49■■□□□ 1.67
TRIM54-202ENST00000380075 NBPF5PQ86XG9 351 aaPredicted RBP25.49■■□□□ 1.67
TRIM54-202ENST00000380075 GTF3C6Q969F1 213 aa25.49■■□□□ 1.67
TRIM54-202ENST00000380075 ZNF512BQ96KM6 892 aaPredicted RBP25.49■■□□□ 1.67
TRIM54-202ENST00000380075 TCEANC2Q96MN5 208 aa25.49■■□□□ 1.67
TRIM54-202ENST00000380075 PDE8AO60658 829 aa25.49■■□□□ 1.67
TRIM54-202ENST00000380075 DHX32Q7L7V1 743 aaKnown RBP25.49■■□□□ 1.67
TRIM54-202ENST00000380075 COL24A1Q17RW2 1714 aa25.49■■□□□ 1.67
TRIM54-202ENST00000380075 ATP2B3Q16720 1220 aa25.48■■□□□ 1.67
TRIM54-202ENST00000380075 METTL24Q5JXM2 366 aa25.48■■□□□ 1.67
TRIM54-202ENST00000380075 LDHAL6AQ6ZMR3 332 aa25.48■■□□□ 1.67
TRIM54-202ENST00000380075 Q6ZUG5 572 aa25.48■■□□□ 1.67
TRIM54-202ENST00000380075 CCDC24Q8N4L8 307 aa25.48■■□□□ 1.67
TRIM54-202ENST00000380075 TRMT112Q9UI30 125 aaKnown RBP25.48■■□□□ 1.67
TRIM54-202ENST00000380075 CCDC183Q5T5S1 534 aa25.47■■□□□ 1.67
TRIM54-202ENST00000380075 CHMP4CQ96CF2 233 aa25.47■■□□□ 1.67
TRIM54-202ENST00000380075 CTNNA3Q9UI47 895 aa25.47■■□□□ 1.67
TRIM54-202ENST00000380075 ADORA1P30542 326 aa25.47■■□□□ 1.67
TRIM54-202ENST00000380075 FKBP4Q02790 459 aaKnown RBP eCLIP25.47■■□□□ 1.67
TRIM54-202ENST00000380075 GREM2Q9H772 168 aa25.47■■□□□ 1.67
TRIM54-202ENST00000380075 MYH3P11055 1940 aa25.47■■□□□ 1.67
TRIM54-202ENST00000380075 NTSR2O95665 410 aa25.46■■□□□ 1.67
TRIM54-202ENST00000380075 PRR5LQ6MZQ0 368 aa25.46■■□□□ 1.67
TRIM54-202ENST00000380075 TPTE2Q6XPS3 522 aa25.46■■□□□ 1.67
TRIM54-202ENST00000380075 LLPHQ9BRT6 129 aaKnown RBP25.46■■□□□ 1.67
TRIM54-202ENST00000380075 UTP14AQ9BVJ6 771 aaKnown RBP25.46■■□□□ 1.67
TRIM54-202ENST00000380075 AGXT2Q9BYV1 514 aa25.46■■□□□ 1.67
TRIM54-202ENST00000380075 TSPY26PQ9H489 355 aa25.46■■□□□ 1.67
TRIM54-202ENST00000380075 RRAGDQ9NQL2 400 aaPredicted RBP25.46■■□□□ 1.67
TRIM54-202ENST00000380075 CNBD1Q8NA66 436 aa25.45■■□□□ 1.67
TRIM54-202ENST00000380075 CCDC85AQ96PX6 553 aaPredicted RBP25.45■■□□□ 1.67
TRIM54-202ENST00000380075 NPHP1O15259 732 aa25.45■■□□□ 1.66
TRIM54-202ENST00000380075 KRT85P78386 507 aa25.45■■□□□ 1.66
TRIM54-202ENST00000380075 DNM1Q05193 864 aaKnown RBP25.45■■□□□ 1.66
TRIM54-202ENST00000380075 STOX1Q6ZVD7 989 aa25.45■■□□□ 1.66
TRIM54-202ENST00000380075 SYNE4Q8N205 404 aa25.45■■□□□ 1.66
TRIM54-202ENST00000380075 CNNM1Q9NRU3 951 aa25.45■■□□□ 1.66
TRIM54-202ENST00000380075 FIBPO43427 364 aa25.44■■□□□ 1.66
TRIM54-202ENST00000380075 FGD1P98174 961 aa25.44■■□□□ 1.66
TRIM54-202ENST00000380075 APPBP2Q92624 585 aa25.44■■□□□ 1.66
TRIM54-202ENST00000380075 NYXQ9GZU5 481 aa25.44■■□□□ 1.66
TRIM54-202ENST00000380075 LRP5O75197 1615 aa25.44■■□□□ 1.66
TRIM54-202ENST00000380075 TCHHQ07283 1943 aa25.44■■□□□ 1.66
TRIM54-202ENST00000380075 HSP90B1P14625 803 aaKnown RBP25.44■■□□□ 1.66
TRIM54-202ENST00000380075 GTF2E1P29083 439 aaPredicted RBP25.44■■□□□ 1.66
TRIM54-202ENST00000380075 ZSCAN25Q6NSZ9 544 aa25.44■■□□□ 1.66
TRIM54-202ENST00000380075 FBXL16Q8N461 479 aa25.44■■□□□ 1.66
TRIM54-202ENST00000380075 OSBP2Q969R2 916 aa25.44■■□□□ 1.66
TRIM54-202ENST00000380075 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.44■■□□□ 1.66
TRIM54-202ENST00000380075 ELP1O95163 1332 aa25.43■■□□□ 1.66
TRIM54-202ENST00000380075 M0R2C6 588 aa25.43■■□□□ 1.66
TRIM54-202ENST00000380075 PFKFB2O60825 505 aa25.43■■□□□ 1.66
TRIM54-202ENST00000380075 EXOSC10Q01780 885 aaKnown RBP25.43■■□□□ 1.66
TRIM54-202ENST00000380075 TTF1Q15361 905 aaPredicted RBP25.43■■□□□ 1.66
TRIM54-202ENST00000380075 ERFEQ4G0M1 354 aa25.43■■□□□ 1.66
TRIM54-202ENST00000380075 VGLL2Q8N8G2 317 aa25.43■■□□□ 1.66
TRIM54-202ENST00000380075 CDC37L1Q7L3B6 337 aa25.42■■□□□ 1.66
TRIM54-202ENST00000380075 BRF1Q92994 677 aa25.42■■□□□ 1.66
TRIM54-202ENST00000380075 PPP1R1BQ9UD71 204 aaPredicted RBP25.42■■□□□ 1.66
TRIM54-202ENST00000380075 ESPNB1AK53 854 aa25.42■■□□□ 1.66
TRIM54-202ENST00000380075 E7EWF7 191 aa25.42■■□□□ 1.66
TRIM54-202ENST00000380075 CLCN1P35523 988 aa25.42■■□□□ 1.66
TRIM54-202ENST00000380075 STK3Q13188 491 aa25.42■■□□□ 1.66
TRIM54-202ENST00000380075 HS1BP3Q53T59 392 aa25.42■■□□□ 1.66
TRIM54-202ENST00000380075 FAM184AQ8NB25 1140 aa25.42■■□□□ 1.66
TRIM54-202ENST00000380075 ZAP70P43403 619 aa25.41■■□□□ 1.66
TRIM54-202ENST00000380075 SLFNL1Q499Z3 407 aa25.41■■□□□ 1.66
TRIM54-202ENST00000380075 PDLIM2Q96JY6 352 aa25.41■■□□□ 1.66
TRIM54-202ENST00000380075 KIF3AQ9Y496 699 aa25.41■■□□□ 1.66
TRIM54-202ENST00000380075 MROH5Q6ZUA9 1318 aa25.41■■□□□ 1.66
TRIM54-202ENST00000380075 PDE8BO95263 885 aa25.4■■□□□ 1.66
TRIM54-202ENST00000380075 SMARCC2Q8TAQ2 1214 aa25.4■■□□□ 1.66
TRIM54-202ENST00000380075 ST5P78524 1137 aa25.4■■□□□ 1.66
TRIM54-202ENST00000380075 HMGN5P82970 282 aaKnown RBP25.4■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms