RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 SREK1Q8WXA9 508 aaKnown RBP20.43■□□□□ 0.86
COL18A1-202ENST00000355480 IQCGQ9H095 443 aaKnown RBP20.43■□□□□ 0.86
COL18A1-202ENST00000355480 BACH1O14867 736 aa20.43■□□□□ 0.86
COL18A1-202ENST00000355480 GIMAP7Q8NHV1 300 aa20.43■□□□□ 0.86
COL18A1-202ENST00000355480 TMEM110-MUSTN1A8MSY1 372 aa20.43■□□□□ 0.86
COL18A1-202ENST00000355480 SKILP12757 684 aa20.43■□□□□ 0.86
COL18A1-202ENST00000355480 CREB3L3Q68CJ9 461 aa20.43■□□□□ 0.86
COL18A1-202ENST00000355480 FAM200AQ8TCP9 573 aa20.43■□□□□ 0.86
COL18A1-202ENST00000355480 EYA1Q99502 592 aa20.43■□□□□ 0.86
COL18A1-202ENST00000355480 RXRAP19793 462 aa20.42■□□□□ 0.86
COL18A1-202ENST00000355480 BICC1Q9H694 974 aaKnown RBP20.42■□□□□ 0.86
COL18A1-202ENST00000355480 HSPA2P54652 639 aa20.42■□□□□ 0.86
COL18A1-202ENST00000355480 KRT24Q2M2I5 525 aa20.42■□□□□ 0.86
COL18A1-202ENST00000355480 CEP85Q6P2H3 762 aa20.42■□□□□ 0.86
COL18A1-202ENST00000355480 TTC6Q86TZ1 520 aa20.42■□□□□ 0.86
COL18A1-202ENST00000355480 PAXBP1Q9Y5B6 917 aa20.42■□□□□ 0.86
COL18A1-202ENST00000355480 THOC2Q8NI27 1593 aaKnown RBP20.42■□□□□ 0.86
COL18A1-202ENST00000355480 RNMTO43148 476 aaKnown RBP20.42■□□□□ 0.86
COL18A1-202ENST00000355480 TACC1O75410 805 aa20.42■□□□□ 0.86
COL18A1-202ENST00000355480 BTG4Q9NY30 223 aa20.42■□□□□ 0.86
COL18A1-202ENST00000355480 CTAGE15A4D2H0 777 aa20.42■□□□□ 0.86
COL18A1-202ENST00000355480 CTAGE8P0CG41 777 aa20.42■□□□□ 0.86
COL18A1-202ENST00000355480 CTAGE6Q86UF2 777 aa20.42■□□□□ 0.86
COL18A1-202ENST00000355480 CTAGE4Q8IX94 777 aa20.42■□□□□ 0.86
COL18A1-202ENST00000355480 TSPYL6Q8N831 410 aa20.42■□□□□ 0.86
COL18A1-202ENST00000355480 ASXL2Q76L83 1435 aa20.42■□□□□ 0.86
COL18A1-202ENST00000355480 NCKAP5LQ9HCH0 1330 aa20.42■□□□□ 0.86
COL18A1-202ENST00000355480 BICDL2A1A5D9 508 aa20.41■□□□□ 0.86
COL18A1-202ENST00000355480 GSTA5Q7RTV2 222 aa20.41■□□□□ 0.86
COL18A1-202ENST00000355480 PARP1P09874 1014 aaKnown RBP20.41■□□□□ 0.86
COL18A1-202ENST00000355480 CNBD1Q8NA66 436 aa20.41■□□□□ 0.86
COL18A1-202ENST00000355480 DTHD1Q6ZMT9 781 aa20.41■□□□□ 0.86
COL18A1-202ENST00000355480 PRDM10Q9NQV6 1147 aa20.41■□□□□ 0.86
COL18A1-202ENST00000355480 SAP30BPQ9UHR5 308 aaKnown RBP20.41■□□□□ 0.86
COL18A1-202ENST00000355480 DENND2AQ9ULE3 1009 aa20.41■□□□□ 0.86
COL18A1-202ENST00000355480 NPATQ14207 1427 aa20.41■□□□□ 0.86
COL18A1-202ENST00000355480 PTPDC1A2A3K4 754 aa20.4■□□□□ 0.86
COL18A1-202ENST00000355480 DUOX2Q9NRD8 1548 aa20.4■□□□□ 0.86
COL18A1-202ENST00000355480 DHX32Q7L7V1 743 aaKnown RBP20.4■□□□□ 0.86
COL18A1-202ENST00000355480 LMBR1Q8WVP7 490 aa20.4■□□□□ 0.86
COL18A1-202ENST00000355480 GJA3Q9Y6H8 435 aa20.4■□□□□ 0.86
COL18A1-202ENST00000355480 MBD4O95243 580 aa20.4■□□□□ 0.86
COL18A1-202ENST00000355480 AK2P54819 239 aa20.4■□□□□ 0.86
COL18A1-202ENST00000355480 PLCD3Q8N3E9 789 aa20.4■□□□□ 0.86
COL18A1-202ENST00000355480 PLIN2Q99541 437 aa20.4■□□□□ 0.86
COL18A1-202ENST00000355480 ZKSCAN3Q9BRR0 538 aa20.4■□□□□ 0.86
COL18A1-202ENST00000355480 DNAI1Q9UI46 699 aa20.4■□□□□ 0.86
COL18A1-202ENST00000355480 HOXC9P31274 260 aa20.4■□□□□ 0.86
COL18A1-202ENST00000355480 PLCB3Q01970 1234 aa20.4■□□□□ 0.86
COL18A1-202ENST00000355480 RAB3GAP1Q15042 981 aa20.4■□□□□ 0.86
COL18A1-202ENST00000355480 GTF2F1P35269 517 aaKnown RBP eCLIP20.4■□□□□ 0.863e-7■■■■□ 24.3
COL18A1-202ENST00000355480 CCDC50Q8IVM0 306 aa20.4■□□□□ 0.86
COL18A1-202ENST00000355480 SYT1P21579 422 aa20.39■□□□□ 0.86
COL18A1-202ENST00000355480 STX17P56962 302 aa20.39■□□□□ 0.86
COL18A1-202ENST00000355480 TEX11Q8IYF3 940 aa20.39■□□□□ 0.86
COL18A1-202ENST00000355480 C6orf163Q5TEZ5 329 aa20.39■□□□□ 0.85
COL18A1-202ENST00000355480 CCDC186Q7Z3E2 898 aa20.39■□□□□ 0.85
COL18A1-202ENST00000355480 NEK11Q8NG66 645 aa20.39■□□□□ 0.85
COL18A1-202ENST00000355480 ZNF830Q96NB3 372 aaPredicted RBP20.39■□□□□ 0.85
COL18A1-202ENST00000355480 PAIP2Q9BPZ3 127 aaKnown RBP20.39■□□□□ 0.85
COL18A1-202ENST00000355480 RBM28Q9NW13 759 aaKnown RBP20.39■□□□□ 0.85
COL18A1-202ENST00000355480 SH2D4AQ9H788 454 aa20.39■□□□□ 0.85
COL18A1-202ENST00000355480 VAMP4O75379 141 aa20.39■□□□□ 0.85
COL18A1-202ENST00000355480 UFL1O94874 794 aa20.39■□□□□ 0.85
COL18A1-202ENST00000355480 CCDC42Q96M95 316 aa20.38■□□□□ 0.85
COL18A1-202ENST00000355480 UBXN1Q04323 297 aa20.38■□□□□ 0.85
COL18A1-202ENST00000355480 CCDC77Q9BR77 488 aa20.38■□□□□ 0.85
COL18A1-202ENST00000355480 PKD2L1Q9P0L9 805 aa20.38■□□□□ 0.85
COL18A1-202ENST00000355480 KRT83P78385 493 aa20.38■□□□□ 0.85
COL18A1-202ENST00000355480 BMS1Q14692 1282 aaKnown RBP20.38■□□□□ 0.85
COL18A1-202ENST00000355480 DCTPP1Q9H773 170 aa20.38■□□□□ 0.85
COL18A1-202ENST00000355480 KIF5AQ12840 1032 aa20.38■□□□□ 0.85
COL18A1-202ENST00000355480 TAF12Q16514 161 aa20.38■□□□□ 0.85
COL18A1-202ENST00000355480 FAM89AQ96GI7 184 aa20.38■□□□□ 0.85
COL18A1-202ENST00000355480 CEP83Q9Y592 693 aa20.38■□□□□ 0.85
COL18A1-202ENST00000355480 MSANTD4Q8NCY6 345 aa20.37■□□□□ 0.85
COL18A1-202ENST00000355480 IP6K1Q92551 441 aa20.37■□□□□ 0.85
COL18A1-202ENST00000355480 CCNL1Q9UK58 526 aaPredicted RBP20.37■□□□□ 0.85
COL18A1-202ENST00000355480 ABCC1P33527 1531 aa20.37■□□□□ 0.85
COL18A1-202ENST00000355480 SOS1Q07889 1333 aaPredicted RBP20.37■□□□□ 0.85
COL18A1-202ENST00000355480 KIF4AO95239 1232 aa20.37■□□□□ 0.85
COL18A1-202ENST00000355480 ATP2A1O14983 1001 aa20.37■□□□□ 0.85
COL18A1-202ENST00000355480 BIN2Q9UBW5 565 aaPredicted RBP20.37■□□□□ 0.85
COL18A1-202ENST00000355480 SERPINA10Q9UK55 444 aa20.37■□□□□ 0.85
COL18A1-202ENST00000355480 LMTK3Q96Q04 1460 aa20.37■□□□□ 0.85
COL18A1-202ENST00000355480 RUFY3Q7L099 469 aa20.37■□□□□ 0.85
COL18A1-202ENST00000355480 ZNF518AQ6AHZ1 1483 aa20.36■□□□□ 0.85
COL18A1-202ENST00000355480 BRAPQ7Z569 592 aa20.36■□□□□ 0.85
COL18A1-202ENST00000355480 GTPBP4Q9BZE4 634 aaKnown RBP20.36■□□□□ 0.85
COL18A1-202ENST00000355480 POLR3AO14802 1390 aaPredicted RBP20.36■□□□□ 0.85
COL18A1-202ENST00000355480 KRT86O43790 486 aa20.36■□□□□ 0.85
COL18A1-202ENST00000355480 TICAM2Q86XR7 235 aa20.36■□□□□ 0.85
COL18A1-202ENST00000355480 GPCPD1Q9NPB8 672 aa20.36■□□□□ 0.85
COL18A1-202ENST00000355480 RAD50Q92878 1312 aa20.35■□□□□ 0.85
COL18A1-202ENST00000355480 PHACTR3Q96KR7 559 aa20.35■□□□□ 0.85
COL18A1-202ENST00000355480 NAP1L4Q99733 375 aaKnown RBP20.35■□□□□ 0.85
COL18A1-202ENST00000355480 DDX21Q9NR30 783 aaKnown RBP eCLIP20.35■□□□□ 0.85
COL18A1-202ENST00000355480 KCNA6P17658 529 aa20.35■□□□□ 0.85
COL18A1-202ENST00000355480 ITGA6P23229 1130 aa20.35■□□□□ 0.85
COL18A1-202ENST00000355480 TERF1P54274 439 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms