RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 PRIMPOLQ96LW4 560 aa18.17■□□□□ 0.5
USP42-201ENST00000306177 ZC3H12CQ9C0D7 883 aaKnown RBP18.17■□□□□ 0.5
USP42-201ENST00000306177 KRT2P35908 639 aa18.17■□□□□ 0.5
USP42-201ENST00000306177 CCDC174Q6PII3 467 aa18.17■□□□□ 0.5
USP42-201ENST00000306177 NSFL1CQ9UNZ2 370 aaKnown RBP18.17■□□□□ 0.5
USP42-201ENST00000306177 ARHGEF10O15013 1369 aa18.16■□□□□ 0.5
USP42-201ENST00000306177 EYA2O00167 538 aa18.16■□□□□ 0.5
USP42-201ENST00000306177 SEC24BO95487 1268 aa18.16■□□□□ 0.5
USP42-201ENST00000306177 IFI16Q16666 785 aaKnown RBP18.16■□□□□ 0.5
USP42-201ENST00000306177 OTUD7AQ8TE49 926 aaPredicted RBP18.16■□□□□ 0.5
USP42-201ENST00000306177 CDCA7Q9BWT1 371 aaPredicted RBP18.16■□□□□ 0.5
USP42-201ENST00000306177 JADE2Q9NQC1 790 aa18.16■□□□□ 0.5
USP42-201ENST00000306177 RRP36Q96EU6 259 aaKnown RBP18.16■□□□□ 0.5
USP42-201ENST00000306177 ASIC1P78348 528 aa18.16■□□□□ 0.5
USP42-201ENST00000306177 DHX58Q96C10 678 aa18.16■□□□□ 0.5
USP42-201ENST00000306177 SKILP12757 684 aa18.16■□□□□ 0.5
USP42-201ENST00000306177 CYLC1P35663 651 aaPredicted RBP18.16■□□□□ 0.5
USP42-201ENST00000306177 HLTFQ14527 1009 aaKnown RBP eCLIP18.16■□□□□ 0.5
USP42-201ENST00000306177 CCDC91Q7Z6B0 441 aa18.16■□□□□ 0.5
USP42-201ENST00000306177 GCOM1H8Y6P7 765 aaPredicted RBP18.15■□□□□ 0.5
USP42-201ENST00000306177 MYZAPP0CAP1 466 aa18.15■□□□□ 0.5
USP42-201ENST00000306177 CCDC186Q7Z3E2 898 aa18.15■□□□□ 0.5
USP42-201ENST00000306177 LDHBP07195 334 aaKnown RBP18.15■□□□□ 0.5
USP42-201ENST00000306177 CTNNA2P26232 953 aa18.15■□□□□ 0.5
USP42-201ENST00000306177 SMARCC2Q8TAQ2 1214 aa18.15■□□□□ 0.5
USP42-201ENST00000306177 SPAG5Q96R06 1193 aa18.15■□□□□ 0.5
USP42-201ENST00000306177 AOX1Q06278 1338 aa18.15■□□□□ 0.5
USP42-201ENST00000306177 TYRO3Q06418 890 aa18.15■□□□□ 0.5
USP42-201ENST00000306177 HOOK3Q86VS8 718 aa18.15■□□□□ 0.5
USP42-201ENST00000306177 XRCC6P12956 609 aaKnown RBP eCLIP18.14■□□□□ 0.49
USP42-201ENST00000306177 CBX1P83916 185 aa18.14■□□□□ 0.49
USP42-201ENST00000306177 PRPF4BQ13523 1007 aaKnown RBP18.14■□□□□ 0.49
USP42-201ENST00000306177 TNNI3KQ59H18 835 aa18.14■□□□□ 0.49
USP42-201ENST00000306177 BICD1Q96G01 975 aa18.14■□□□□ 0.49
USP42-201ENST00000306177 FPGT-TNNI3KV9GXZ4 949 aa18.14■□□□□ 0.49
USP42-201ENST00000306177 SPATA31E1Q6ZUB1 1445 aa18.14■□□□□ 0.49
USP42-201ENST00000306177 MAP2K1Q02750 393 aaPredicted RBP18.14■□□□□ 0.49
USP42-201ENST00000306177 USP37Q86T82 979 aa18.14■□□□□ 0.49
USP42-201ENST00000306177 FERMT2Q96AC1 680 aa18.14■□□□□ 0.49
USP42-201ENST00000306177 A0A1B0GUL7 405 aa18.14■□□□□ 0.49
USP42-201ENST00000306177 GNPATO15228 680 aa18.14■□□□□ 0.49
USP42-201ENST00000306177 TIMM10P62072 90 aa18.14■□□□□ 0.49
USP42-201ENST00000306177 PARP10Q53GL7 1025 aa18.14■□□□□ 0.49
USP42-201ENST00000306177 HSP90AA4PQ58FG1 418 aa18.14■□□□□ 0.49
USP42-201ENST00000306177 CFAP74Q9C0B2 1584 aa18.14■□□□□ 0.49
USP42-201ENST00000306177 DENND2AQ9ULE3 1009 aa18.14■□□□□ 0.49
USP42-201ENST00000306177 SH3TC1Q8TE82 1336 aa18.13■□□□□ 0.49
USP42-201ENST00000306177 KDM5AP29375 1690 aaKnown RBP18.13■□□□□ 0.49
USP42-201ENST00000306177 TBC1D5Q92609 795 aa18.13■□□□□ 0.49
USP42-201ENST00000306177 RBM28Q9NW13 759 aaKnown RBP18.13■□□□□ 0.49
USP42-201ENST00000306177 TFCP2L1Q9NZI6 479 aa18.13■□□□□ 0.49
USP42-201ENST00000306177 SPECC1Q5M775 1068 aa18.13■□□□□ 0.49
USP42-201ENST00000306177 ATL3Q6DD88 541 aa18.13■□□□□ 0.49
USP42-201ENST00000306177 KLHDC4Q8TBB5 520 aa18.13■□□□□ 0.49
USP42-201ENST00000306177 DDX17Q92841 729 aaKnown RBP18.13■□□□□ 0.49
USP42-201ENST00000306177 A1BGP04217 495 aa18.13■□□□□ 0.49
USP42-201ENST00000306177 GNA11P29992 359 aa18.13■□□□□ 0.49
USP42-201ENST00000306177 PRIM1P49642 420 aaKnown RBP18.13■□□□□ 0.49
USP42-201ENST00000306177 KRT79Q5XKE5 535 aa18.13■□□□□ 0.49
USP42-201ENST00000306177 MBD4O95243 580 aa18.12■□□□□ 0.49
USP42-201ENST00000306177 SAMD9LQ8IVG5 1584 aa18.12■□□□□ 0.49
USP42-201ENST00000306177 ITGA6P23229 1130 aa18.12■□□□□ 0.49
USP42-201ENST00000306177 PODXL2Q9NZ53 605 aa18.12■□□□□ 0.49
USP42-201ENST00000306177 ZNF830Q96NB3 372 aaPredicted RBP18.12■□□□□ 0.49
USP42-201ENST00000306177 GTPBP4Q9BZE4 634 aaKnown RBP18.12■□□□□ 0.49
USP42-201ENST00000306177 MMRN2Q9H8L6 949 aa18.12■□□□□ 0.49
USP42-201ENST00000306177 SYT1P21579 422 aa18.12■□□□□ 0.49
USP42-201ENST00000306177 NOLC1Q14978 699 aaKnown RBP eCLIP18.12■□□□□ 0.49
USP42-201ENST00000306177 EYA3Q99504 573 aa18.12■□□□□ 0.49
USP42-201ENST00000306177 DBNDD2Q9BQY9 259 aa18.12■□□□□ 0.49
USP42-201ENST00000306177 PARP3Q9Y6F1 533 aa18.12■□□□□ 0.49
USP42-201ENST00000306177 SPDYE3A6NKU9 549 aa18.11■□□□□ 0.49
USP42-201ENST00000306177 KRT13P13646 458 aa18.11■□□□□ 0.49
USP42-201ENST00000306177 RPS6KB1P23443 525 aa18.11■□□□□ 0.49
USP42-201ENST00000306177 ZNF496Q96IT1 587 aaPredicted RBP18.11■□□□□ 0.49
USP42-201ENST00000306177 EIF4A1P60842 406 aaKnown RBP18.11■□□□□ 0.49
USP42-201ENST00000306177 CKAP4Q07065 602 aaKnown RBP18.11■□□□□ 0.49
USP42-201ENST00000306177 BCCIPQ9P287 314 aaKnown RBP eCLIP18.11■□□□□ 0.49
USP42-201ENST00000306177 PUF60Q9UHX1 559 aaKnown RBP18.11■□□□□ 0.49
USP42-201ENST00000306177 DYNC1I1O14576 645 aa18.11■□□□□ 0.49
USP42-201ENST00000306177 PUM3Q15397 648 aaKnown RBP18.11■□□□□ 0.49
USP42-201ENST00000306177 KIAA0232Q92628 1395 aa18.11■□□□□ 0.49
USP42-201ENST00000306177 PNMA6EA0A0J9YXQ4 647 aa18.1■□□□□ 0.49
USP42-201ENST00000306177 POLR3GO15318 223 aaPredicted RBP18.1■□□□□ 0.49
USP42-201ENST00000306177 RXRAP19793 462 aa18.1■□□□□ 0.49
USP42-201ENST00000306177 LMOD1P29536 600 aaPredicted RBP18.1■□□□□ 0.49
USP42-201ENST00000306177 KDM2BQ8NHM5 1336 aa18.1■□□□□ 0.49
USP42-201ENST00000306177 TNNI2P48788 182 aa18.1■□□□□ 0.49
USP42-201ENST00000306177 SUCLG2Q96I99 432 aa18.1■□□□□ 0.49
USP42-201ENST00000306177 ZSWIM4Q9H7M6 989 aa18.1■□□□□ 0.49
USP42-201ENST00000306177 SLAIN2Q9P270 581 aa18.1■□□□□ 0.49
USP42-201ENST00000306177 PLCD4Q9BRC7 762 aa18.09■□□□□ 0.49
USP42-201ENST00000306177 PDE8AO60658 829 aa18.09■□□□□ 0.49
USP42-201ENST00000306177 TUBB4AP04350 444 aa18.09■□□□□ 0.49
USP42-201ENST00000306177 SMC1AQ14683 1233 aaKnown RBP18.09■□□□□ 0.49
USP42-201ENST00000306177 CTR9Q6PD62 1173 aa18.09■□□□□ 0.49
USP42-201ENST00000306177 BICDL2A1A5D9 508 aa18.09■□□□□ 0.49
USP42-201ENST00000306177 SLC27A2O14975 620 aa18.09■□□□□ 0.49
USP42-201ENST00000306177 MCM7P33993 719 aa18.09■□□□□ 0.49
USP42-201ENST00000306177 GCKRQ14397 625 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms