RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 VPS18Q9P253 973 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 USH1CQ9Y6N9 552 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 F6X3S4 739 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 FAM13AO94988 1023 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 CCDC82Q8N4S0 544 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.99□□□□□ -0.97
LIMD1-201ENST00000273317 PIK3C2GO75747 1445 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 EEF2P13639 858 aaKnown RBP8.99□□□□□ -0.97
LIMD1-201ENST00000273317 ARID4AP29374 1257 aaPredicted RBP8.99□□□□□ -0.97
LIMD1-201ENST00000273317 TSNAXIP1Q2TAA8 658 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 CCDC144CPQ8IYA2 1237 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 SMAP1Q8IYB5 467 aaPredicted RBP8.99□□□□□ -0.97
LIMD1-201ENST00000273317 AFAP1L2Q8N4X5 818 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 PPFIBP2Q8ND30 876 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 ERO1AQ96HE7 468 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 CACNA2D3Q8IZS8 1091 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 A0A1B0GUA9 196 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 GNA11P29992 359 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 AFMP43652 599 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 PDE1AP54750 535 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 INTS8Q75QN2 995 aaKnown RBP8.99□□□□□ -0.97
LIMD1-201ENST00000273317 CCDC186Q7Z3E2 898 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 HEATR3Q7Z4Q2 680 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 RHPN1Q8TCX5 695 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 RRP36Q96EU6 259 aaKnown RBP8.99□□□□□ -0.97
LIMD1-201ENST00000273317 RPL13P26373 211 aaKnown RBP8.99□□□□□ -0.97
LIMD1-201ENST00000273317 NAPAP54920 295 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 PPP1R7Q15435 360 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 Q6ZUG5 572 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 RASSF4Q9H2L5 321 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 CNGA1P29973 690 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 PPARDQ03181 441 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 MAP7Q14244 749 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 ZMYND15Q9H091 742 aa8.99□□□□□ -0.97
LIMD1-201ENST00000273317 LUC7L2Q9Y383 392 aaKnown RBP8.99□□□□□ -0.97
LIMD1-201ENST00000273317 SHANK2Q9UPX8 1470 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 IL15P40933 162 aaPredicted RBP8.98□□□□□ -0.97
LIMD1-201ENST00000273317 ANKRD44Q8N8A2 993 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 CALCOCO2Q13137 446 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 CCDC184Q52MB2 194 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 CFAP58Q5T655 872 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 MICALL1Q8N3F8 863 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 KIFAP3Q92845 792 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 FANCAO15360 1455 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 XRCC6P12956 609 aaKnown RBP eCLIP8.98□□□□□ -0.97
LIMD1-201ENST00000273317 CEP57Q86XR8 500 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 NME9Q86XW9 330 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 UBL4BQ8N7F7 174 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 PARD3Q8TEW0 1356 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 SNX16P57768 344 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 LMNTD2Q8IXW0 634 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 PHF8Q9UPP1 1060 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 TXNDC16Q9P2K2 825 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 AKR1B15C9JRZ8 316 aaPredicted RBP8.98□□□□□ -0.97
LIMD1-201ENST00000273317 SH3BGRP55822 239 aaPredicted RBP8.98□□□□□ -0.97
LIMD1-201ENST00000273317 HAND2P61296 217 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 FAM160A1Q05DH4 1040 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 NCBP1Q09161 790 aaKnown RBP8.98□□□□□ -0.97
LIMD1-201ENST00000273317 CCDC63Q8NA47 563 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 TTF2Q9UNY4 1162 aaKnown RBP8.98□□□□□ -0.97
LIMD1-201ENST00000273317 ATP6V0A2Q9Y487 856 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 MPRIPQ6WCQ1 1025 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 SEC62Q99442 399 aaKnown RBP8.98□□□□□ -0.97
LIMD1-201ENST00000273317 KIF3CO14782 793 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 PTCD1O75127 700 aaKnown RBP8.98□□□□□ -0.97
LIMD1-201ENST00000273317 BRF1Q92994 677 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 VCX3BQ9H321 246 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 RBM8AQ9Y5S9 174 aaKnown RBP8.98□□□□□ -0.97
LIMD1-201ENST00000273317 URB2Q14146 1524 aaKnown RBP8.98□□□□□ -0.97
LIMD1-201ENST00000273317 ARHGAP25P42331 645 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 GABPB1Q06547 395 aaPredicted RBP8.98□□□□□ -0.97
LIMD1-201ENST00000273317 IFNL2Q8IZJ0 200 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 ARHGAP24Q8N264 748 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 IQUBQ8NA54 791 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 DNAJC25Q9H1X3 360 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 PAG1Q9NWQ8 432 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 TSKSQ9UJT2 592 aa8.98□□□□□ -0.97
LIMD1-201ENST00000273317 WDR78Q5VTH9 848 aa8.97□□□□□ -0.97
LIMD1-201ENST00000273317 TAOK1Q7L7X3 1001 aa8.97□□□□□ -0.97
LIMD1-201ENST00000273317 HS2ST1Q7LGA3 356 aa8.97□□□□□ -0.97
LIMD1-201ENST00000273317 PLCB1Q9NQ66 1216 aa8.97□□□□□ -0.97
LIMD1-201ENST00000273317 TPD52P55327 224 aaPredicted RBP8.97□□□□□ -0.97
LIMD1-201ENST00000273317 TTLL12Q14166 644 aaPredicted RBP8.97□□□□□ -0.97
LIMD1-201ENST00000273317 GABPB2Q8TAK5 448 aaPredicted RBP8.97□□□□□ -0.97
LIMD1-201ENST00000273317 MAK16Q9BXY0 300 aaKnown RBP8.97□□□□□ -0.97
LIMD1-201ENST00000273317 VCXQ9H320 206 aa8.97□□□□□ -0.97
LIMD1-201ENST00000273317 FRMD4BQ9Y2L6 1034 aa8.97□□□□□ -0.97
LIMD1-201ENST00000273317 POLR3AO14802 1390 aaPredicted RBP8.97□□□□□ -0.97
LIMD1-201ENST00000273317 CAPZA3Q96KX2 299 aa8.97□□□□□ -0.97
LIMD1-201ENST00000273317 NAPGQ99747 312 aaPredicted RBP8.97□□□□□ -0.97
LIMD1-201ENST00000273317 NUTM2BA6NNL0 878 aaPredicted RBP8.97□□□□□ -0.97
LIMD1-201ENST00000273317 NUTM2EB1AL46 878 aaPredicted RBP8.97□□□□□ -0.97
LIMD1-201ENST00000273317 ACTN4O43707 911 aaKnown RBP8.97□□□□□ -0.97
LIMD1-201ENST00000273317 GLT8D2Q9H1C3 349 aa8.97□□□□□ -0.97
LIMD1-201ENST00000273317 FAM114A2Q9NRY5 505 aa8.97□□□□□ -0.97
LIMD1-201ENST00000273317 PSMC4P43686 418 aa8.97□□□□□ -0.97
LIMD1-201ENST00000273317 TERF1P54274 439 aa8.97□□□□□ -0.97
LIMD1-201ENST00000273317 PPP2R3AQ06190 1150 aa8.97□□□□□ -0.97
LIMD1-201ENST00000273317 C10orf67Q8IYJ2 551 aa8.97□□□□□ -0.97
LIMD1-201ENST00000273317 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms