RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Rapgef1Q3UHC1 1224 aa13.39□□□□□ -0.27
Trim56-201ENSMUST00000054384 Actr5Q80US4 605 aaKnown RBP13.39□□□□□ -0.27
Trim56-201ENSMUST00000054384 Magi1Q6RHR9 1471 aa13.39□□□□□ -0.27
Trim56-201ENSMUST00000054384 Dclk3Q8BWQ5 790 aa13.39□□□□□ -0.27
Trim56-201ENSMUST00000054384 Top2bQ64511 1612 aa13.39□□□□□ -0.27
Trim56-201ENSMUST00000054384 Esyt2Q3TZZ7 845 aa13.39□□□□□ -0.27
Trim56-201ENSMUST00000054384 Rfx7F8VPJ6 1459 aa13.38□□□□□ -0.27
Trim56-201ENSMUST00000054384 Fgd6Q69ZL1 1399 aa13.38□□□□□ -0.27
Trim56-201ENSMUST00000054384 SsbP32067 415 aaKnown RBP13.38□□□□□ -0.27
Trim56-201ENSMUST00000054384 Pabpn1lQ5XFR0 273 aa13.38□□□□□ -0.27
Trim56-201ENSMUST00000054384 Acot9Q9R0X4 439 aaKnown RBP13.38□□□□□ -0.27
Trim56-201ENSMUST00000054384 Psmb7P70195 277 aa13.38□□□□□ -0.27
Trim56-201ENSMUST00000054384 HhatQ8BMT9 499 aa13.38□□□□□ -0.27
Trim56-201ENSMUST00000054384 Gtpbp4Q99ME9 634 aaKnown RBP13.38□□□□□ -0.27
Trim56-201ENSMUST00000054384 Synpo2Q91YE8 1087 aaKnown RBP13.38□□□□□ -0.27
Trim56-201ENSMUST00000054384 SynmQ70IV5 1561 aa13.38□□□□□ -0.27
Trim56-201ENSMUST00000054384 Palm3A2TJV2 734 aa13.38□□□□□ -0.27
Trim56-201ENSMUST00000054384 Zkscan4Q5SZT6 480 aa13.38□□□□□ -0.27
Trim56-201ENSMUST00000054384 Rbm26Q6NZN0 1012 aaKnown RBP13.38□□□□□ -0.27
Trim56-201ENSMUST00000054384 Taf12Q8VE65 161 aa13.38□□□□□ -0.27
Trim56-201ENSMUST00000054384 IkbkgO88522 412 aa13.38□□□□□ -0.27
Trim56-201ENSMUST00000054384 Ccdc124Q9D8X2 217 aaKnown RBP13.38□□□□□ -0.27
Trim56-201ENSMUST00000054384 Ncoa1P70365 1447 aa13.38□□□□□ -0.27
Trim56-201ENSMUST00000054384 Ift20Q61025 132 aa13.38□□□□□ -0.27
Trim56-201ENSMUST00000054384 Stoml1Q8CI66 399 aa13.38□□□□□ -0.27
Trim56-201ENSMUST00000054384 Glg1Q61543 1175 aaKnown RBP13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 Ano1Q8BHY3 960 aa13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 Ccdc113Q8C5T8 377 aa13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 Nip7Q9CXK8 180 aaKnown RBP13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 FibpQ9JI19 357 aa13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 Polr3aB2RXC6 1390 aa13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 Cep63Q3UPP8 700 aa13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 Tubb2aQ7TMM9 445 aa13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 Myl6bQ8CI43 207 aa13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 Tubb2bQ9CWF2 445 aa13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 NapgQ9CWZ7 312 aa13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 Ddx49Q4FZF3 480 aaKnown RBP13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 Spata16Q8C636 571 aa13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 Mrpl12Q9DB15 201 aaKnown RBP13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 Naip2Q9QUK4 1447 aa13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 Taf4bG5E8Z2 855 aa13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 ChkbO55229 394 aa13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 Gm5934D3Z4U6 212 aa13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 Cracr2aQ3UP38 310 aa13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 RilpQ5ND29 369 aa13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 Snd1Q78PY7 910 aaKnown RBP13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 Lin9Q8C735 542 aa13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 Leo1Q5XJE5 667 aa13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 SpopQ6ZWS8 374 aa13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 Clasp2Q8BRT1 1286 aaKnown RBP13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 CenppQ9CZ92 286 aa13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 Tekt2Q922G7 430 aa13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 AI481877A2ALV5 1481 aa13.37□□□□□ -0.27
Trim56-201ENSMUST00000054384 Tmem132aQ922P8 1018 aa13.36□□□□□ -0.27
Trim56-201ENSMUST00000054384 Naip7Q9JIB3 1402 aa13.36□□□□□ -0.27
Trim56-201ENSMUST00000054384 Naip6Q9JIB6 1403 aa13.36□□□□□ -0.27
Trim56-201ENSMUST00000054384 Atp2b3Q0VF55 1220 aa13.36□□□□□ -0.27
Trim56-201ENSMUST00000054384 Heatr4E9Q357 955 aa13.36□□□□□ -0.27
Trim56-201ENSMUST00000054384 Gimap8Q75N62 688 aa13.36□□□□□ -0.27
Trim56-201ENSMUST00000054384 Gbp6A0A0G2JDV3 611 aa13.36□□□□□ -0.27
Trim56-201ENSMUST00000054384 Gm43302L7N1X8 611 aa13.36□□□□□ -0.27
Trim56-201ENSMUST00000054384 Zrsr1Q64707 428 aa13.36□□□□□ -0.27
Trim56-201ENSMUST00000054384 Tbc1d31Q6NXY1 996 aa13.36□□□□□ -0.27
Trim56-201ENSMUST00000054384 Ppfia2Q8BSS9 1257 aa13.36□□□□□ -0.27
Trim56-201ENSMUST00000054384 Slc12a5Q91V14 1138 aa13.36□□□□□ -0.27
Trim56-201ENSMUST00000054384 Ndufab1Q9CR21 156 aa13.36□□□□□ -0.27
Trim56-201ENSMUST00000054384 BlvraQ9CY64 295 aa13.36□□□□□ -0.27
Trim56-201ENSMUST00000054384 Cpsf2O35218 782 aaKnown RBP13.36□□□□□ -0.27
Trim56-201ENSMUST00000054384 Cers3Q1A3B0 383 aa13.36□□□□□ -0.27
Trim56-201ENSMUST00000054384 Exoc5Q3TPX4 708 aa13.36□□□□□ -0.27
Trim56-201ENSMUST00000054384 Gbp9Q8BTS3 619 aa13.36□□□□□ -0.27
Trim56-201ENSMUST00000054384 Gipc1Q9Z0G0 333 aa13.36□□□□□ -0.27
Trim56-201ENSMUST00000054384 Plcb1Q9Z1B3 1216 aa13.36□□□□□ -0.27
Trim56-201ENSMUST00000054384 Ppp1r12cQ3UMT1 782 aa13.36□□□□□ -0.27
Trim56-201ENSMUST00000054384 Ifih1Q8R5F7 1025 aa13.36□□□□□ -0.27
Trim56-201ENSMUST00000054384 Camsap1A2AHC3 1581 aa13.36□□□□□ -0.27
Trim56-201ENSMUST00000054384 Trove2O08848 538 aa13.36□□□□□ -0.27
Trim56-201ENSMUST00000054384 Slc5a4bQ91ZP4 660 aa13.36□□□□□ -0.27
Trim56-201ENSMUST00000054384 Ak9G3UYQ4 1894 aa13.36□□□□□ -0.27
Trim56-201ENSMUST00000054384 Pdrg1P59048 133 aa13.35□□□□□ -0.27
Trim56-201ENSMUST00000054384 1700018F24RikB2RW27 314 aa13.35□□□□□ -0.27
Trim56-201ENSMUST00000054384 Traf1P39428 409 aa13.35□□□□□ -0.27
Trim56-201ENSMUST00000054384 Tceanc2Q8R2M0 207 aa13.35□□□□□ -0.27
Trim56-201ENSMUST00000054384 Dydc2Q9D3X8 139 aa13.35□□□□□ -0.27
Trim56-201ENSMUST00000054384 Slx4ipQ9D7Y9 413 aa13.35□□□□□ -0.27
Trim56-201ENSMUST00000054384 Nub1P54729 614 aa13.35□□□□□ -0.27
Trim56-201ENSMUST00000054384 Kif11Q6P9P6 1052 aa13.35□□□□□ -0.27
Trim56-201ENSMUST00000054384 Hirip3Q8BLH7 601 aa13.35□□□□□ -0.27
Trim56-201ENSMUST00000054384 Trerf1Q8BXJ2 1205 aa13.35□□□□□ -0.27
Trim56-201ENSMUST00000054384 Trpc3Q9QZC1 836 aa13.35□□□□□ -0.27
Trim56-201ENSMUST00000054384 Letm1Q9Z2I0 738 aa13.35□□□□□ -0.27
Trim56-201ENSMUST00000054384 Ppip5k1A2ARP1 1436 aa13.35□□□□□ -0.27
Trim56-201ENSMUST00000054384 Esyt1Q3U7R1 1092 aaKnown RBP13.35□□□□□ -0.27
Trim56-201ENSMUST00000054384 Ccdc157Q5SPX1 718 aa13.35□□□□□ -0.27
Trim56-201ENSMUST00000054384 Mpp4Q6P7F1 635 aa13.35□□□□□ -0.27
Trim56-201ENSMUST00000054384 Nup62clA2AG10 272 aa13.35□□□□□ -0.27
Trim56-201ENSMUST00000054384 Mcm7Q61881 719 aaKnown RBP13.35□□□□□ -0.27
Trim56-201ENSMUST00000054384 Prpf40bQ80W14 870 aa13.35□□□□□ -0.27
Trim56-201ENSMUST00000054384 Idi2Q8BFZ6 227 aa13.35□□□□□ -0.27
Trim56-201ENSMUST00000054384 BrapQ99MP8 591 aa13.35□□□□□ -0.27
Retrieved 100 of 22,080 RNA–protein pairs in 19.3 ms