Protein–RNA interactions for Protein: Q80W14

Prpf40b, Pre-mRNA-processing factor 40 homolog B, mousemouse

Predictions only

Length 870 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40bQ80W14 Gm25239-201ENSMUST00000174915 86 ntBASIC44.86■■■■■ 4.77
Prpf40bQ80W14 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC41.8■■■■■ 4.28
Prpf40bQ80W14 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC41.14■■■■■ 4.18
Prpf40bQ80W14 Gm24109-201ENSMUST00000175489 103 ntBASIC39.24■■■■□ 3.87
Prpf40bQ80W14 Gm15042-201ENSMUST00000120212 883 ntBASIC38.54■■■■□ 3.76
Prpf40bQ80W14 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC37.93■■■■□ 3.66
Prpf40bQ80W14 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC37.92■■■■□ 3.66
Prpf40bQ80W14 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC37.89■■■■□ 3.66
Prpf40bQ80W14 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC37.68■■■■□ 3.62
Prpf40bQ80W14 Gm15045-201ENSMUST00000117359 883 ntBASIC37.55■■■■□ 3.6
Prpf40bQ80W14 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC37.46■■■■□ 3.59
Prpf40bQ80W14 Gm23366-201ENSMUST00000175022 89 ntBASIC37.37■■■■□ 3.57
Prpf40bQ80W14 AC153911.1-202ENSMUST00000218534 1034 ntBASIC36.84■■■■□ 3.49
Prpf40bQ80W14 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC36.64■■■■□ 3.46
Prpf40bQ80W14 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC36.57■■■■□ 3.44
Prpf40bQ80W14 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC36.51■■■■□ 3.44
Prpf40bQ80W14 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC36.45■■■■□ 3.43
Prpf40bQ80W14 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC36.41■■■■□ 3.42
Prpf40bQ80W14 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC36.35■■■■□ 3.41
Prpf40bQ80W14 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC36.04■■■■□ 3.36
Prpf40bQ80W14 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC35.78■■■■□ 3.32
Prpf40bQ80W14 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC35.74■■■■□ 3.31
Prpf40bQ80W14 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC35.69■■■■□ 3.3
Prpf40bQ80W14 Gm25238-201ENSMUST00000174914 89 ntBASIC35.63■■■■□ 3.29
Prpf40bQ80W14 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC35.61■■■■□ 3.29
Prpf40bQ80W14 Psd-208ENSMUST00000224556 2034 ntBASIC35.4■■■■□ 3.26
Prpf40bQ80W14 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC34.92■■■■□ 3.18
Prpf40bQ80W14 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC34.86■■■■□ 3.17
Prpf40bQ80W14 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC34.81■■■■□ 3.16
Prpf40bQ80W14 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC34.72■■■■□ 3.15
Prpf40bQ80W14 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC34.63■■■■□ 3.13
Prpf40bQ80W14 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC34.51■■■■□ 3.11
Prpf40bQ80W14 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC34.5■■■■□ 3.11
Prpf40bQ80W14 Gm25262-201ENSMUST00000174934 133 ntBASIC34.48■■■■□ 3.11
Prpf40bQ80W14 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC34.44■■■■□ 3.1
Prpf40bQ80W14 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC34.36■■■■□ 3.09
Prpf40bQ80W14 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC34.3■■■■□ 3.08
Prpf40bQ80W14 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC34.3■■■■□ 3.08
Prpf40bQ80W14 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC34.17■■■■□ 3.06
Prpf40bQ80W14 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC34.12■■■■□ 3.05
Prpf40bQ80W14 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC34.11■■■■□ 3.05
Prpf40bQ80W14 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC34■■■■□ 3.03
Prpf40bQ80W14 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC34■■■■□ 3.03
Prpf40bQ80W14 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC33.97■■■■□ 3.03
Prpf40bQ80W14 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC33.97■■■■□ 3.03
Prpf40bQ80W14 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC33.97■■■■□ 3.03
Prpf40bQ80W14 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC33.94■■■■□ 3.02
Prpf40bQ80W14 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC33.93■■■■□ 3.02
Prpf40bQ80W14 Gm26115-201ENSMUST00000175605 87 ntBASIC33.9■■■■□ 3.02
Prpf40bQ80W14 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC33.9■■■■□ 3.02
Prpf40bQ80W14 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC33.87■■■■□ 3.01
Prpf40bQ80W14 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC33.84■■■■□ 3.01
Prpf40bQ80W14 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC33.79■■■■□ 3
Prpf40bQ80W14 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC33.71■■■□□ 2.99
Prpf40bQ80W14 Gm27325-201ENSMUST00000175467 74 ntBASIC33.64■■■□□ 2.98
Prpf40bQ80W14 Gm8109-201ENSMUST00000194076 746 ntBASIC33.63■■■□□ 2.97
Prpf40bQ80W14 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC33.62■■■□□ 2.97
Prpf40bQ80W14 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC33.6■■■□□ 2.97
Prpf40bQ80W14 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
Prpf40bQ80W14 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC33.49■■■□□ 2.95
Prpf40bQ80W14 Rab21-202ENSMUST00000218831 843 ntBASIC33.48■■■□□ 2.95
Prpf40bQ80W14 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC33.46■■■□□ 2.95
Prpf40bQ80W14 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC33.33■■■□□ 2.93
Prpf40bQ80W14 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
Prpf40bQ80W14 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC33.21■■■□□ 2.91
Prpf40bQ80W14 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
Prpf40bQ80W14 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC33.09■■■□□ 2.89
Prpf40bQ80W14 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
Prpf40bQ80W14 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC33.08■■■□□ 2.89
Prpf40bQ80W14 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC33.05■■■□□ 2.88
Prpf40bQ80W14 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC33.01■■■□□ 2.87
Prpf40bQ80W14 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC32.93■■■□□ 2.86
Prpf40bQ80W14 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
Prpf40bQ80W14 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC32.84■■■□□ 2.85
Prpf40bQ80W14 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
Prpf40bQ80W14 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
Prpf40bQ80W14 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC32.73■■■□□ 2.83
Prpf40bQ80W14 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC32.72■■■□□ 2.83
Prpf40bQ80W14 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
Prpf40bQ80W14 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
Prpf40bQ80W14 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC32.61■■■□□ 2.81
Prpf40bQ80W14 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
Prpf40bQ80W14 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
Prpf40bQ80W14 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC32.55■■■□□ 2.8
Prpf40bQ80W14 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC32.5■■■□□ 2.79
Prpf40bQ80W14 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC32.49■■■□□ 2.79
Prpf40bQ80W14 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
Prpf40bQ80W14 Gm17082-201ENSMUST00000166043 1091 ntBASIC32.45■■■□□ 2.79
Prpf40bQ80W14 Gm24804-201ENSMUST00000174982 85 ntBASIC32.45■■■□□ 2.79
Prpf40bQ80W14 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC32.43■■■□□ 2.78
Prpf40bQ80W14 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC32.41■■■□□ 2.78
Prpf40bQ80W14 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC32.4■■■□□ 2.78
Prpf40bQ80W14 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
Prpf40bQ80W14 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
Prpf40bQ80W14 Gm10524-201ENSMUST00000181931 1893 ntBASIC32.18■■■□□ 2.74
Prpf40bQ80W14 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC32.17■■■□□ 2.74
Prpf40bQ80W14 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC32.15■■■□□ 2.74
Prpf40bQ80W14 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
Prpf40bQ80W14 Gm27322-201ENSMUST00000184007 104 ntBASIC32.12■■■□□ 2.73
Prpf40bQ80W14 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
Retrieved 100 of 76,532 protein–RNA pairs in 18.6 ms