RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	FAM189A2	Q15884	450 aa		10.91	□□□□□ -0.66
SF1-206	ENST00000413725	TAF9	Q16594	264 aa		10.91	□□□□□ -0.66
SF1-206	ENST00000413725	C2orf76	Q3KRA6	126 aa		10.91	□□□□□ -0.66
SF1-206	ENST00000413725	PAN3	Q58A45	887 aa	Known RBP	10.91	□□□□□ -0.66
SF1-206	ENST00000413725	DCAF12L2	Q5VW00	463 aa		10.91	□□□□□ -0.66
SF1-206	ENST00000413725	OR10K2	Q6IF99	312 aa		10.91	□□□□□ -0.66
SF1-206	ENST00000413725	BTNL3	Q6UXE8	466 aa		10.91	□□□□□ -0.66
SF1-206	ENST00000413725	CLEC9A	Q6UXN8	241 aa		10.91	□□□□□ -0.66
SF1-206	ENST00000413725	USP43	Q70EL4	1123 aa		10.91	□□□□□ -0.66
SF1-206	ENST00000413725	BTN2A1	Q7KYR7	527 aa		10.91	□□□□□ -0.66
SF1-206	ENST00000413725	OR4M2	Q8NGB6	313 aa		10.91	□□□□□ -0.66
SF1-206	ENST00000413725	MRI1	Q9BV20	369 aa		10.91	□□□□□ -0.66
SF1-206	ENST00000413725	CHST6	Q9GZX3	395 aa		10.91	□□□□□ -0.66
SF1-206	ENST00000413725	KCNK15	Q9H427	330 aa		10.91	□□□□□ -0.66
SF1-206	ENST00000413725	IFT22	Q9H7X7	185 aa		10.91	□□□□□ -0.66
SF1-206	ENST00000413725	HIF1AN	Q9NWT6	349 aa		10.91	□□□□□ -0.66
SF1-206	ENST00000413725	KCNS2	Q9ULS6	477 aa		10.91	□□□□□ -0.66
SF1-206	ENST00000413725	TEP1	Q99973	2627 aa	Known RBP	10.9	□□□□□ -0.66
SF1-206	ENST00000413725	TRBV23-1	A0A0A0MS06	115 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	IGHV2-70D	A0A0C4DH43	119 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	TMEM272	A0A1B0GTI8	110 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	TMEM82	A0PJX8	343 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	FUOM	A2VDF0	154 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	PSPN	O60542	156 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	FCN3	O75636	299 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	LY6G6D	O95868	133 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	SLC2A2	P11168	524 aa	Predicted RBP	10.9	□□□□□ -0.66
SF1-206	ENST00000413725	OR3A1	P47881	315 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	KCNJ3	P48549	501 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	SCAND1	P57086	179 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	RPS27A	P62979	156 aa	Known RBP	10.9	□□□□□ -0.66
SF1-206	ENST00000413725	KRTAP1-1	Q07627	177 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	PDCD1	Q15116	288 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	ATAD3C	Q5T2N8	411 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	IDNK	Q5T6J7	187 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	C17orf107	Q6ZR85	190 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	FGFRL1	Q8N441	504 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	OR4S1	Q8NGB4	309 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	RAB40A	Q8WXH6	277 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	SMR3A	Q99954	134 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	NUDT16L1	Q9BRJ7	211 aa	Known RBP	10.9	□□□□□ -0.66
SF1-206	ENST00000413725	DCTN5	Q9BTE1	182 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	TM2D1	Q9BX74	207 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	DCSTAMP	Q9H295	470 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	PPA2	Q9H2U2	334 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	YAE1D1	Q9NRH1	226 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	LPAR3	Q9UBY5	353 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	RPUSD1	Q9UJJ7	312 aa	Known RBP	10.9	□□□□□ -0.66
SF1-206	ENST00000413725	RAB22A	Q9UL26	194 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725	NAV3	Q8IVL0	2385 aa		10.9	□□□□□ -0.66
SF1-206	ENST00000413725		A0A0B4J203	849 aa		10.89	□□□□□ -0.67
SF1-206	ENST00000413725	TRAV24	A0A0B4J272	114 aa		10.89	□□□□□ -0.67
SF1-206	ENST00000413725		A0A1W2PQ09	198 aa		10.89	□□□□□ -0.67
SF1-206	ENST00000413725	CCDC160	A6NGH7	325 aa		10.89	□□□□□ -0.67
SF1-206	ENST00000413725	C22orf46	C9J442	243 aa		10.89	□□□□□ -0.67
SF1-206	ENST00000413725	HSPB6	O14558	160 aa		10.89	□□□□□ -0.67
SF1-206	ENST00000413725	LDLRAD4	O15165	306 aa		10.89	□□□□□ -0.67
SF1-206	ENST00000413725	CSN2	P05814	226 aa		10.89	□□□□□ -0.67
SF1-206	ENST00000413725	LIPF	P07098	398 aa		10.89	□□□□□ -0.67
SF1-206	ENST00000413725	RAB6A	P20340	208 aa		10.89	□□□□□ -0.67
SF1-206	ENST00000413725	EDDM3B	P56851	147 aa		10.89	□□□□□ -0.67
SF1-206	ENST00000413725	RPL31	P62899	125 aa	Known RBP	10.89	□□□□□ -0.67
SF1-206	ENST00000413725	EDDM3A	Q14507	147 aa		10.89	□□□□□ -0.67
SF1-206	ENST00000413725	SUMF2	Q8NBJ7	301 aa		10.89	□□□□□ -0.67
SF1-206	ENST00000413725	C8orf46	Q8TAG6	207 aa		10.89	□□□□□ -0.67
SF1-206	ENST00000413725	NEK7	Q8TDX7	302 aa		10.89	□□□□□ -0.67
SF1-206	ENST00000413725	PTX4	Q96A99	478 aa		10.89	□□□□□ -0.67
SF1-206	ENST00000413725	SLC25A46	Q96AG3	418 aa		10.89	□□□□□ -0.67
SF1-206	ENST00000413725	DMRTB1	Q96MA1	342 aa		10.89	□□□□□ -0.67
SF1-206	ENST00000413725	DPCD	Q9BVM2	203 aa	Predicted RBP	10.89	□□□□□ -0.67
SF1-206	ENST00000413725	SHARPIN	Q9H0F6	387 aa		10.89	□□□□□ -0.67
SF1-206	ENST00000413725	INSIG2	Q9Y5U4	225 aa		10.89	□□□□□ -0.67
SF1-206	ENST00000413725		A0A1W2PPH5	198 aa		10.88	□□□□□ -0.67
SF1-206	ENST00000413725		A8MV72	311 aa	Predicted RBP	10.88	□□□□□ -0.67
SF1-206	ENST00000413725	MCRIP1	C9JLW8	97 aa		10.88	□□□□□ -0.67
SF1-206	ENST00000413725		J3QLI3	93 aa		10.88	□□□□□ -0.67
SF1-206	ENST00000413725	PDCD6	O75340	191 aa		10.88	□□□□□ -0.67
SF1-206	ENST00000413725	PPIAL4G	P0DN37	164 aa		10.88	□□□□□ -0.67
SF1-206	ENST00000413725	SNRPB	P14678	240 aa	Known RBP	10.88	□□□□□ -0.67
SF1-206	ENST00000413725	FUT3	P21217	361 aa		10.88	□□□□□ -0.67
SF1-206	ENST00000413725	PAX2	Q02962	417 aa		10.88	□□□□□ -0.67
SF1-206	ENST00000413725	BLMH	Q13867	455 aa		10.88	□□□□□ -0.67
SF1-206	ENST00000413725	RBM39	Q14498	530 aa	Known RBP	10.88	□□□□□ -0.67
SF1-206	ENST00000413725	ATXN7L3	Q14CW9	347 aa	Predicted RBP	10.88	□□□□□ -0.67
SF1-206	ENST00000413725	RAB12	Q6IQ22	244 aa		10.88	□□□□□ -0.67
SF1-206	ENST00000413725	FAHD2B	Q6P2I3	314 aa	Predicted RBP	10.88	□□□□□ -0.67
SF1-206	ENST00000413725	FAM185A	Q8N0U4	392 aa		10.88	□□□□□ -0.67
SF1-206	ENST00000413725	NDNF	Q8TB73	568 aa		10.88	□□□□□ -0.67
SF1-206	ENST00000413725	LGALS14	Q8TCE9	139 aa		10.88	□□□□□ -0.67
SF1-206	ENST00000413725	ISOC1	Q96CN7	298 aa		10.88	□□□□□ -0.67
SF1-206	ENST00000413725	FAHD2A	Q96GK7	314 aa		10.88	□□□□□ -0.67
SF1-206	ENST00000413725	NEDD4L	Q96PU5	975 aa		10.88	□□□□□ -0.67
SF1-206	ENST00000413725	LPAR5	Q9H1C0	372 aa		10.88	□□□□□ -0.67
SF1-206	ENST00000413725	MMP26	Q9NRE1	261 aa		10.88	□□□□□ -0.67
SF1-206	ENST00000413725	ABRACL	Q9P1F3	81 aa		10.88	□□□□□ -0.67
SF1-206	ENST00000413725	RCC2	Q9P258	522 aa	Known RBP	10.88	□□□□□ -0.67
SF1-206	ENST00000413725	PEX16	Q9Y5Y5	336 aa		10.88	□□□□□ -0.67
SF1-206	ENST00000413725	ETV7	Q9Y603	341 aa		10.88	□□□□□ -0.67
SF1-206	ENST00000413725	MTOR	P42345	2549 aa		10.88	□□□□□ -0.67
SF1-206	ENST00000413725	NSD1	Q96L73	2696 aa	Predicted RBP	10.87	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms