RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 PPIHO43447 177 aaKnown RBP11.92□□□□□ -0.5
SKA1-202ENST00000398452 HLA-DQB1P01920 261 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 LPLP06858 475 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 INHBBP09529 407 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 PSG2P11465 335 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 COL8A2P25067 703 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 KCNJ3P48549 501 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 PTH2RP49190 550 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 TMEM33P57088 247 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 AP3S2P59780 193 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 BTG1P62324 171 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 DCTN2Q13561 401 aaKnown RBP11.92□□□□□ -0.5
SKA1-202ENST00000398452 ZNF260Q3ZCT1 412 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 LINC01559Q495D7 138 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 HACD4Q5VWC8 232 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 TEX36Q5VZQ5 186 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 SUMF2Q8NBJ7 301 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 SMIM4Q8WVI0 70 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 MED30Q96HR3 178 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 ABHD1Q96SE0 405 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 SOSTQ9BQB4 213 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 THAP7Q9BT49 309 aaPredicted RBP11.92□□□□□ -0.5
SKA1-202ENST00000398452 DNTTIP1Q9H147 329 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 RIMS4Q9H426 269 aaPredicted RBP11.92□□□□□ -0.5
SKA1-202ENST00000398452 IFT22Q9H7X7 185 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 SEBOXQ9HB31 216 aaPredicted RBP11.92□□□□□ -0.5
SKA1-202ENST00000398452 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.92□□□□□ -0.5
SKA1-202ENST00000398452 ABCB10Q9NRK6 738 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 ETAA1Q9NY74 926 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 TAS2R8Q9NYW2 309 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 CACNG2Q9Y698 323 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 ANKRD17O75179 2603 aaKnown RBP11.92□□□□□ -0.5
SKA1-202ENST00000398452 OTOGQ6ZRI0 2925 aa11.92□□□□□ -0.5
SKA1-202ENST00000398452 MED13LQ71F56 2210 aa11.91□□□□□ -0.5
SKA1-202ENST00000398452 OVOL3O00110 214 aa11.91□□□□□ -0.5
SKA1-202ENST00000398452 MFNGO00587 321 aa11.91□□□□□ -0.5
SKA1-202ENST00000398452 CA11O75493 328 aa11.91□□□□□ -0.5
SKA1-202ENST00000398452 ZNF205O95201 554 aa11.91□□□□□ -0.5
SKA1-202ENST00000398452 DNASE1P24855 282 aa11.91□□□□□ -0.5
SKA1-202ENST00000398452 GPR6P46095 362 aaPredicted RBP11.91□□□□□ -0.5
SKA1-202ENST00000398452 PDLIM4P50479 330 aa11.91□□□□□ -0.5
SKA1-202ENST00000398452 ATP5J2P56134 94 aa11.91□□□□□ -0.5
SKA1-202ENST00000398452 TMEM50BP56557 158 aa11.91□□□□□ -0.5
SKA1-202ENST00000398452 DEFA1P59665 94 aa11.91□□□□□ -0.5
SKA1-202ENST00000398452 DEFA3P59666 94 aa11.91□□□□□ -0.5
SKA1-202ENST00000398452 COL10A1Q03692 680 aa11.91□□□□□ -0.5
SKA1-202ENST00000398452 PLAC9Q5JTB6 97 aa11.91□□□□□ -0.5
SKA1-202ENST00000398452 FAM201AQ5SY85 155 aa11.91□□□□□ -0.5
SKA1-202ENST00000398452 LCE2CQ5TA81 110 aa11.91□□□□□ -0.5
SKA1-202ENST00000398452 ZNF57Q68EA5 555 aaPredicted RBP11.91□□□□□ -0.5
SKA1-202ENST00000398452 TRAPPC6BQ86SZ2 158 aa11.91□□□□□ -0.5
SKA1-202ENST00000398452 BIVMQ86UB2 503 aa11.91□□□□□ -0.5
SKA1-202ENST00000398452 ZNF561Q8N587 486 aa11.91□□□□□ -0.5
SKA1-202ENST00000398452 OR5D13Q8NGL4 314 aa11.91□□□□□ -0.5
SKA1-202ENST00000398452 YIPF5Q969M3 257 aa11.91□□□□□ -0.5
SKA1-202ENST00000398452 SNX22Q96L94 193 aa11.91□□□□□ -0.5
SKA1-202ENST00000398452 FAAP24Q9BTP7 215 aa11.91□□□□□ -0.5
SKA1-202ENST00000398452 PALMDQ9NP74 551 aa11.91□□□□□ -0.5
SKA1-202ENST00000398452 ZNF701Q9NV72 531 aaPredicted RBP11.91□□□□□ -0.5
SKA1-202ENST00000398452 PCDHB10Q9UN67 800 aa11.91□□□□□ -0.5
SKA1-202ENST00000398452 ADGRG4Q8IZF6 3080 aa11.91□□□□□ -0.5
SKA1-202ENST00000398452 C2CD3Q4AC94 2353 aa11.9□□□□□ -0.5
SKA1-202ENST00000398452 CENPXA8MT69 81 aa11.9□□□□□ -0.5
SKA1-202ENST00000398452 LYNX1G3V0Z9 82 aa11.9□□□□□ -0.5
SKA1-202ENST00000398452 SLC33A1O00400 549 aaPredicted RBP11.9□□□□□ -0.5
SKA1-202ENST00000398452 GSTZ1O43708 216 aaPredicted RBP11.9□□□□□ -0.5
SKA1-202ENST00000398452 SSX4O60224 188 aa11.9□□□□□ -0.5
SKA1-202ENST00000398452 ECDO95905 644 aaPredicted RBP11.9□□□□□ -0.5
SKA1-202ENST00000398452 GYPAP02724 150 aa11.9□□□□□ -0.5
SKA1-202ENST00000398452 MELTFP08582 738 aa11.9□□□□□ -0.5
SKA1-202ENST00000398452 CSF3P09919 207 aa11.9□□□□□ -0.5
SKA1-202ENST00000398452 LYNX1P0DP58 116 aa11.9□□□□□ -0.5
SKA1-202ENST00000398452 CEBPDP49716 269 aaPredicted RBP11.9□□□□□ -0.5
SKA1-202ENST00000398452 IL13RA1P78552 427 aa11.9□□□□□ -0.5
SKA1-202ENST00000398452 SSBP1Q04837 148 aaKnown RBP11.9□□□□□ -0.5
SKA1-202ENST00000398452 ZNF79Q15937 498 aa11.9□□□□□ -0.5
SKA1-202ENST00000398452 Q6P435 159 aa11.9□□□□□ -0.5
SKA1-202ENST00000398452 TOMM5Q8N4H5 51 aa11.9□□□□□ -0.5
SKA1-202ENST00000398452 SPICQ8N5J4 248 aa11.9□□□□□ -0.5
SKA1-202ENST00000398452 TMEM185AQ8NFB2 350 aa11.9□□□□□ -0.5
SKA1-202ENST00000398452 SETD6Q8TBK2 473 aa11.9□□□□□ -0.5
SKA1-202ENST00000398452 NRGNQ92686 78 aa11.9□□□□□ -0.5
SKA1-202ENST00000398452 SEH1LQ96EE3 360 aa11.9□□□□□ -0.5
SKA1-202ENST00000398452 SULT4A1Q9BR01 284 aa11.9□□□□□ -0.5
SKA1-202ENST00000398452 PPA2Q9H2U2 334 aa11.9□□□□□ -0.5
SKA1-202ENST00000398452 C12orf4Q9NQ89 552 aa11.9□□□□□ -0.5
SKA1-202ENST00000398452 RCC2Q9P258 522 aaKnown RBP11.9□□□□□ -0.5
SKA1-202ENST00000398452 ARFGEF3Q5TH69 2177 aa11.89□□□□□ -0.51
SKA1-202ENST00000398452 DSCAMO60469 2012 aa11.89□□□□□ -0.51
SKA1-202ENST00000398452 FOXI3A8MTJ6 420 aaPredicted RBP11.89□□□□□ -0.51
SKA1-202ENST00000398452 TMPRSS2O15393 492 aa11.89□□□□□ -0.51
SKA1-202ENST00000398452 ADAM20O43506 726 aa11.89□□□□□ -0.51
SKA1-202ENST00000398452 NDUFB3O43676 98 aa11.89□□□□□ -0.51
SKA1-202ENST00000398452 UPK1BO75841 260 aa11.89□□□□□ -0.51
SKA1-202ENST00000398452 CSF1P09603 554 aa11.89□□□□□ -0.51
SKA1-202ENST00000398452 PTHLHP12272 177 aa11.89□□□□□ -0.51
SKA1-202ENST00000398452 IL7P13232 177 aa11.89□□□□□ -0.51
SKA1-202ENST00000398452 LMO1P25800 156 aa11.89□□□□□ -0.51
SKA1-202ENST00000398452 RCVRNP35243 200 aa11.89□□□□□ -0.51
SKA1-202ENST00000398452 FAUP35544 74 aaKnown RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 174.6 ms