RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 TMEM158Q8WZ71 300 aa1.97□□□□□ -2.09
SCFD1-219ENST00000556413 CIDECQ96AQ7 238 aaPredicted RBP1.97□□□□□ -2.09
SCFD1-219ENST00000556413 CMTM7Q96FZ5 175 aa1.97□□□□□ -2.09
SCFD1-219ENST00000556413 CHMP6Q96FZ7 201 aa1.97□□□□□ -2.09
SCFD1-219ENST00000556413 RNF145Q96MT1 663 aa1.97□□□□□ -2.09
SCFD1-219ENST00000556413 NOL4LQ96MY1 436 aaPredicted RBP1.97□□□□□ -2.09
SCFD1-219ENST00000556413 COL21A1Q96P44 957 aa1.97□□□□□ -2.09
SCFD1-219ENST00000556413 EFCAB11Q9BUY7 163 aa1.97□□□□□ -2.09
SCFD1-219ENST00000556413 BEX2Q9BXY8 128 aa1.97□□□□□ -2.09
SCFD1-219ENST00000556413 FRMD8P1Q9BZ68 369 aaPredicted RBP1.97□□□□□ -2.09
SCFD1-219ENST00000556413 DERL2Q9GZP9 239 aa1.97□□□□□ -2.09
SCFD1-219ENST00000556413 Q9H3A6 140 aa1.97□□□□□ -2.09
SCFD1-219ENST00000556413 RHOJQ9H4E5 214 aa1.97□□□□□ -2.09
SCFD1-219ENST00000556413 DCAF13Q9NV06 445 aaKnown RBP1.97□□□□□ -2.09
SCFD1-219ENST00000556413 LYARQ9NX58 379 aaKnown RBP1.97□□□□□ -2.09
SCFD1-219ENST00000556413 ZNF226Q9NYT6 803 aa1.97□□□□□ -2.09
SCFD1-219ENST00000556413 OPTCQ9UBM4 332 aa1.97□□□□□ -2.09
SCFD1-219ENST00000556413 PHF11Q9UIL8 331 aa1.97□□□□□ -2.09
SCFD1-219ENST00000556413 FIS1Q9Y3D6 152 aa1.97□□□□□ -2.09
SCFD1-219ENST00000556413 OR10H1Q9Y4A9 318 aa1.97□□□□□ -2.09
SCFD1-219ENST00000556413 POLR3HQ9Y535 204 aaPredicted RBP1.97□□□□□ -2.09
SCFD1-219ENST00000556413 EPPK1P58107 5090 aaKnown RBP1.97□□□□□ -2.09
SCFD1-219ENST00000556413 SONP18583 2426 aaKnown RBP1.97□□□□□ -2.09
SCFD1-219ENST00000556413 PRKDCP78527 4128 aaKnown RBP1.97□□□□□ -2.09
SCFD1-219ENST00000556413 DNAJC13O75165 2243 aa1.97□□□□□ -2.09
SCFD1-219ENST00000556413 NSD1Q96L73 2696 aaPredicted RBP1.96□□□□□ -2.1
SCFD1-219ENST00000556413 STAB1Q9NY15 2570 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 HEATR5BQ9P2D3 2071 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 A0A0J9YW62 118 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 TCRBV9S1A1TA0A576 114 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 LRCOL1A6NCL2 159 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 E7EQL1 145 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 ATP6V1G2-DDX39BF2Z307 99 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 K7EPI3 171 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 ABCD4O14678 606 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 RAD51CO43502 376 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 SNAI2O43623 268 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 EFNA2O43921 213 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 KERAO60938 352 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 BCAS1O75363 584 aaPredicted RBP1.96□□□□□ -2.1
SCFD1-219ENST00000556413 GCM2O75603 506 aaPredicted RBP1.96□□□□□ -2.1
SCFD1-219ENST00000556413 OR4F21O95013 312 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 SCELO95171 688 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 SNX4O95219 450 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 UTS2O95399 124 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 H6PDO95479 791 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 TTC4O95801 387 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 C1QCP02747 245 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 GSTA1P08263 222 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 MLNP12872 115 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 STMN1P16949 149 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 CCNA2P20248 432 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 TBXA2RP21731 343 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 AGTR1P30556 359 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 GCKP35557 465 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 DEKP35659 375 aaKnown RBP1.96□□□□□ -2.1
SCFD1-219ENST00000556413 PMELP40967 661 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 EMDP50402 254 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 CCNG1P51959 295 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 NCBP2P52298 156 aaKnown RBP eCLIP1.96□□□□□ -2.12e-12■■□□□ 12.9
SCFD1-219ENST00000556413 FOXA1P55317 472 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 CTBP2P56545 445 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 RAB10P61026 200 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 ACTG1P63261 375 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 CDK16Q00536 496 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 DR1Q01658 176 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 FUT7Q11130 342 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 RAB35Q15286 201 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 TRIP10Q15642 601 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 ALKBH6Q3KRA9 238 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 BEX5Q5H9J7 111 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 FAM120AOSQ5T036 256 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 SULT1C3Q6IMI6 304 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 SLC48A1Q6P1K1 146 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 CCDC36Q8IYA8 594 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 CENPLQ8N0S6 344 aaPredicted RBP1.96□□□□□ -2.1
SCFD1-219ENST00000556413 LRRC75A-AS1Q8N1F1 130 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 ZCCHC7Q8N3Z6 543 aaKnown RBP1.96□□□□□ -2.1
SCFD1-219ENST00000556413 C10orf53Q8N6V4 93 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 TTLQ8NG68 377 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 OR10H4Q8NGA5 316 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 OR4F6Q8NGB9 312 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 OR52E4Q8NGH9 312 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 OR8K3Q8NH51 312 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 OR2V1Q8NHB1 315 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 SELENOMQ8WWX9 145 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 C22orf15Q8WYQ4 148 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 TM4SF18Q96CE8 201 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 WDR34Q96EX3 536 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 VSTM2LQ96N03 204 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 GPR22Q99680 433 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 RBBP8Q99708 897 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 BPESC1Q9GZL8 116 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 ROGDIQ9GZN7 287 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 SIRPDQ9H106 197 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 TPK1Q9H3S4 243 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 COQ10BQ9H8M1 238 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 NANOGQ9H9S0 305 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 RNF122Q9H9V4 155 aa1.96□□□□□ -2.1
SCFD1-219ENST00000556413 LRTM1Q9HBL6 345 aa1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms