RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 EFSO43281 561 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 SGCEO43556 437 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 APOC1P02654 83 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 JMJD7P0C870 316 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 RPA2P15927 270 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 MGMTP16455 207 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 IL13RA1P78552 427 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 SRSF4Q08170 494 aaKnown RBP16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 ABLIM2Q6H8Q1 611 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 SPINK14Q6IE38 97 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 ZNF774Q6NX45 483 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 AAED1Q7RTV5 226 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 HOGA1Q86XE5 327 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 MARCH1Q8TCQ1 289 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 FBXW5Q969U6 566 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 OCSTAMPQ9BR26 566 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 A0A1W2PNU3 283 aaPredicted RBP16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 OR5H14A6NHG9 310 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 CST2P09228 141 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 PATE4P0C8F1 98 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 RRASP10301 218 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 B4GALT1P15291 398 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 SERPINA2P20848 420 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 GDF1P27539 372 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 FOXO1Q12778 655 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 RAB35Q15286 201 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 OR2AE1Q8NHA4 323 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 MITD1Q8WV92 249 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 HAS2Q92819 552 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 MFFQ9GZY8 342 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 FOXJ2Q9P0K8 574 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 GHRLQ9UBU3 117 aa16.2■□□□□ 0.18
PRPF40B-208ENST00000548436 MTRF1O75570 445 aaKnown RBP16.19■□□□□ 0.18
PRPF40B-208ENST00000548436 AKR1C4P17516 323 aa16.19■□□□□ 0.18
PRPF40B-208ENST00000548436 ACKR3P25106 362 aa16.19■□□□□ 0.18
PRPF40B-208ENST00000548436 FAM189A2Q15884 450 aa16.19■□□□□ 0.18
PRPF40B-208ENST00000548436 ALKAL2Q6UX46 152 aa16.19■□□□□ 0.18
PRPF40B-208ENST00000548436 GSG1LQ6UXU4 331 aa16.19■□□□□ 0.18
PRPF40B-208ENST00000548436 ZC3HAV1Q7Z2W4 902 aaKnown RBP16.19■□□□□ 0.18
PRPF40B-208ENST00000548436 OR52H1Q8NGJ2 320 aa16.19■□□□□ 0.18
PRPF40B-208ENST00000548436 CPT1CQ8TCG5 803 aa16.19■□□□□ 0.18
PRPF40B-208ENST00000548436 ZNF845Q96IR2 970 aaPredicted RBP16.19■□□□□ 0.18
PRPF40B-208ENST00000548436 SEC22AQ96IW7 307 aa16.19■□□□□ 0.18
PRPF40B-208ENST00000548436 THOC3Q96J01 351 aaKnown RBP16.19■□□□□ 0.18
PRPF40B-208ENST00000548436 DDA1Q9BW61 102 aa16.19■□□□□ 0.18
PRPF40B-208ENST00000548436 MRPS18CQ9Y3D5 142 aaKnown RBP16.19■□□□□ 0.18
PRPF40B-208ENST00000548436 TUBAL3A6NHL2 446 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 SP9P0CG40 484 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 ZNF32P17041 273 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 AVPR2P30518 371 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 AP2S1P53680 142 aaPredicted RBP16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 GFRA1P56159 465 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 ARFRP1Q13795 201 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 GK2Q14410 553 aaPredicted RBP16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 VAX1Q5SQQ9 334 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 LPCAT3Q6P1A2 487 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 FAHD2BQ6P2I3 314 aaPredicted RBP16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 DRAM2Q6UX65 266 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 SLC16A14Q7RTX9 510 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 OR1F12Q8NHA8 337 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 TERB2Q8NHR7 220 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 C10orf35Q96D05 121 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 FAHD2AQ96GK7 314 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 KIF25Q9UIL4 384 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 AHCTF1Q8WYP5 2266 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 B3GALNT1O75752 331 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 HLA-GP17693 338 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 CNR1P21554 472 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 VAMP1P23763 118 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 BLVRBP30043 206 aaPredicted RBP16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 ZNF528Q3MIS6 628 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 ZNF546Q86UE3 836 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 AKR7LQ8NHP1 331 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 CASTOR1Q8WTX7 329 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 PHB2Q99623 299 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 PDCD10Q9BUL8 212 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 GPR173Q9NS66 373 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 LRFN1Q9P244 771 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 TTC28Q96AY4 2481 aa16.18■□□□□ 0.18
PRPF40B-208ENST00000548436 GPR179Q6PRD1 2367 aa16.17■□□□□ 0.18
PRPF40B-208ENST00000548436 MPGP29372 298 aa16.17■□□□□ 0.18
PRPF40B-208ENST00000548436 PRSS12P56730 875 aa16.17■□□□□ 0.18
PRPF40B-208ENST00000548436 AANATQ16613 207 aa16.17■□□□□ 0.18
PRPF40B-208ENST00000548436 SEMA6DQ8NFY4 1073 aa16.17■□□□□ 0.18
PRPF40B-208ENST00000548436 FGFBP3Q8TAT2 258 aa16.17■□□□□ 0.18
PRPF40B-208ENST00000548436 ABHD3Q8WU67 409 aa16.17■□□□□ 0.18
PRPF40B-208ENST00000548436 MARVELD3Q96A59 401 aa16.17■□□□□ 0.18
PRPF40B-208ENST00000548436 REEP6Q96HR9 211 aa16.17■□□□□ 0.18
PRPF40B-208ENST00000548436 TM2D1Q9BX74 207 aa16.17■□□□□ 0.18
PRPF40B-208ENST00000548436 PECRQ9BY49 303 aa16.17■□□□□ 0.18
PRPF40B-208ENST00000548436 BDP1A6H8Y1 2624 aa16.17■□□□□ 0.18
PRPF40B-208ENST00000548436 I3L521 148 aa16.17■□□□□ 0.18
PRPF40B-208ENST00000548436 PDGFAP04085 211 aa16.17■□□□□ 0.18
PRPF40B-208ENST00000548436 HPNP05981 417 aa16.17■□□□□ 0.18
PRPF40B-208ENST00000548436 ZNF250P15622 560 aa16.17■□□□□ 0.18
PRPF40B-208ENST00000548436 RIPPLY1Q0D2K3 151 aa16.17■□□□□ 0.18
PRPF40B-208ENST00000548436 CEACAM16Q2WEN9 425 aa16.17■□□□□ 0.18
PRPF40B-208ENST00000548436 LRRC37A5PQ49AS3 106 aa16.17■□□□□ 0.18
PRPF40B-208ENST00000548436 ACTBL2Q562R1 376 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms