RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 TLNRD1Q9H1K6 362 aa16.43■□□□□ 0.22
SQSTM1-215ENST00000514093 OPA3Q9H6K4 179 aa16.43■□□□□ 0.22
SQSTM1-215ENST00000514093 FAM32AQ9Y421 112 aaKnown RBP16.43■□□□□ 0.22
SQSTM1-215ENST00000514093 ACAA1P09110 424 aaPredicted RBP16.42■□□□□ 0.22
SQSTM1-215ENST00000514093 COX7A1P24310 79 aa16.42■□□□□ 0.22
SQSTM1-215ENST00000514093 GABRA2P47869 451 aa16.42■□□□□ 0.22
SQSTM1-215ENST00000514093 CAV3P56539 151 aa16.42■□□□□ 0.22
SQSTM1-215ENST00000514093 ERVFRD-1P60508 538 aa16.42■□□□□ 0.22
SQSTM1-215ENST00000514093 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.42■□□□□ 0.22
SQSTM1-215ENST00000514093 TIGD6Q17RP2 521 aa16.42■□□□□ 0.22
SQSTM1-215ENST00000514093 LHFPL4Q7Z7J7 247 aa16.42■□□□□ 0.22
SQSTM1-215ENST00000514093 DYNAPQ8N1N2 210 aa16.42■□□□□ 0.22
SQSTM1-215ENST00000514093 CYB561A3Q8NBI2 242 aa16.42■□□□□ 0.22
SQSTM1-215ENST00000514093 ZNRF1Q8ND25 227 aa16.42■□□□□ 0.22
SQSTM1-215ENST00000514093 PROKR2Q8NFJ6 384 aa16.42■□□□□ 0.22
SQSTM1-215ENST00000514093 SLAMF6Q96DU3 332 aa16.42■□□□□ 0.22
SQSTM1-215ENST00000514093 REEP6Q96HR9 211 aa16.42■□□□□ 0.22
SQSTM1-215ENST00000514093 PAPOLGQ9BWT3 736 aaKnown RBP16.42■□□□□ 0.22
SQSTM1-215ENST00000514093 WNT10AQ9GZT5 417 aa16.42■□□□□ 0.22
SQSTM1-215ENST00000514093 KRCC1Q9NPI7 259 aaPredicted RBP16.42■□□□□ 0.22
SQSTM1-215ENST00000514093 NDUFAF4Q9P032 175 aa16.42■□□□□ 0.22
SQSTM1-215ENST00000514093 TRBV23-1A0A0A0MS06 115 aa16.41■□□□□ 0.22
SQSTM1-215ENST00000514093 ANXA2P07355 339 aaKnown RBP16.41■□□□□ 0.22
SQSTM1-215ENST00000514093 SPARCP09486 303 aa16.41■□□□□ 0.22
SQSTM1-215ENST00000514093 NCK1P16333 377 aa16.41■□□□□ 0.22
SQSTM1-215ENST00000514093 GNALP38405 381 aa16.41■□□□□ 0.22
SQSTM1-215ENST00000514093 GFOD2Q3B7J2 385 aa16.41■□□□□ 0.22
SQSTM1-215ENST00000514093 TMEM95Q3KNT9 176 aa16.41■□□□□ 0.22
SQSTM1-215ENST00000514093 SLC15A3Q8IY34 581 aa16.41■□□□□ 0.22
SQSTM1-215ENST00000514093 PAPD5Q8NDF8 572 aaKnown RBP16.41■□□□□ 0.22
SQSTM1-215ENST00000514093 TMEM185AQ8NFB2 350 aa16.41■□□□□ 0.22
SQSTM1-215ENST00000514093 OR4C15Q8NGM1 316 aa16.41■□□□□ 0.22
SQSTM1-215ENST00000514093 INTS9Q9NV88 658 aaKnown RBP16.41■□□□□ 0.22
SQSTM1-215ENST00000514093 OR2AT4A6NND4 320 aa16.4■□□□□ 0.22
SQSTM1-215ENST00000514093 EDF1O60869 148 aaKnown RBP16.4■□□□□ 0.22
SQSTM1-215ENST00000514093 PF4V1P10720 104 aa16.4■□□□□ 0.22
SQSTM1-215ENST00000514093 FAHP16930 419 aa16.4■□□□□ 0.22
SQSTM1-215ENST00000514093 HOXD3P31249 432 aaPredicted RBP16.4■□□□□ 0.22
SQSTM1-215ENST00000514093 CNN3Q15417 329 aaKnown RBP16.4■□□□□ 0.22
SQSTM1-215ENST00000514093 KLHL12Q53G59 568 aa16.4■□□□□ 0.22
SQSTM1-215ENST00000514093 ARSJQ5FYB0 599 aaPredicted RBP16.4■□□□□ 0.22
SQSTM1-215ENST00000514093 OR10Z1Q8NGY1 313 aa16.4■□□□□ 0.22
SQSTM1-215ENST00000514093 MICU1Q9BPX6 476 aa16.4■□□□□ 0.22
SQSTM1-215ENST00000514093 FUZQ9BT04 418 aa16.4■□□□□ 0.22
SQSTM1-215ENST00000514093 C19orf12Q9NSK7 152 aa16.4■□□□□ 0.22
SQSTM1-215ENST00000514093 NLKQ9UBE8 527 aa16.4■□□□□ 0.22
SQSTM1-215ENST00000514093 TCF19Q9Y242 345 aa16.4■□□□□ 0.22
SQSTM1-215ENST00000514093 hCG_38984A0A1B0GV85 526 aa16.39■□□□□ 0.21
SQSTM1-215ENST00000514093 RHCEP18577 417 aa16.39■□□□□ 0.21
SQSTM1-215ENST00000514093 CX3CR1P49238 355 aa16.39■□□□□ 0.21
SQSTM1-215ENST00000514093 GSK3AP49840 483 aa16.39■□□□□ 0.21
SQSTM1-215ENST00000514093 LGALS4P56470 323 aa16.39■□□□□ 0.21
SQSTM1-215ENST00000514093 BLCAPP62952 87 aa16.39■□□□□ 0.21
SQSTM1-215ENST00000514093 MAPRE2Q15555 327 aa16.39■□□□□ 0.21
SQSTM1-215ENST00000514093 KCTD8Q6ZWB6 473 aa16.39■□□□□ 0.21
SQSTM1-215ENST00000514093 FAM162AQ96A26 154 aa16.39■□□□□ 0.21
SQSTM1-215ENST00000514093 RCN3Q96D15 328 aa16.39■□□□□ 0.21
SQSTM1-215ENST00000514093 ATP6V1G3Q96LB4 118 aa16.39■□□□□ 0.21
SQSTM1-215ENST00000514093 OCSTAMPQ9BR26 566 aa16.39■□□□□ 0.21
SQSTM1-215ENST00000514093 PRSS22Q9GZN4 317 aa16.39■□□□□ 0.21
SQSTM1-215ENST00000514093 FGF23Q9GZV9 251 aaPredicted RBP16.39■□□□□ 0.21
SQSTM1-215ENST00000514093 SAR1AQ9NR31 198 aa16.39■□□□□ 0.21
SQSTM1-215ENST00000514093 ZNF319Q9P2F9 582 aa16.39■□□□□ 0.21
SQSTM1-215ENST00000514093 COMMD3-BMI1R4GMX3 469 aa16.39■□□□□ 0.21
SQSTM1-215ENST00000514093 IGKV1D-17A0A075B6S4 117 aa16.38■□□□□ 0.21
SQSTM1-215ENST00000514093 A6NDX4 124 aa16.38■□□□□ 0.21
SQSTM1-215ENST00000514093 ANXA2P2A6NMY6 339 aa16.38■□□□□ 0.21
SQSTM1-215ENST00000514093 SLC35A2P78381 396 aa16.38■□□□□ 0.21
SQSTM1-215ENST00000514093 CD83Q01151 205 aa16.38■□□□□ 0.21
SQSTM1-215ENST00000514093 FAM57BQ71RH2 274 aa16.38■□□□□ 0.21
SQSTM1-215ENST00000514093 CPLX4Q7Z7G2 160 aa16.38■□□□□ 0.21
SQSTM1-215ENST00000514093 C11orf42Q8N5U0 333 aa16.38■□□□□ 0.21
SQSTM1-215ENST00000514093 ZNF511Q8NB15 262 aa16.38■□□□□ 0.21
SQSTM1-215ENST00000514093 OR5AU1Q8NGC0 362 aa16.38■□□□□ 0.21
SQSTM1-215ENST00000514093 B9D2Q9BPU9 175 aa16.38■□□□□ 0.21
SQSTM1-215ENST00000514093 SIKE1Q9BRV8 207 aa16.38■□□□□ 0.21
SQSTM1-215ENST00000514093 RTL8AQ9BWD3 113 aa16.38■□□□□ 0.21
SQSTM1-215ENST00000514093 HEXA-AS1Q9H8Q6 139 aa16.38■□□□□ 0.21
SQSTM1-215ENST00000514093 SP140LQ9H930 580 aa16.38■□□□□ 0.21
SQSTM1-215ENST00000514093 BRD7Q9NPI1 651 aa16.38■□□□□ 0.21
SQSTM1-215ENST00000514093 DNAJC27Q9NZQ0 273 aa16.38■□□□□ 0.21
SQSTM1-215ENST00000514093 ZNF850A8MQ14 1090 aa16.37■□□□□ 0.21
SQSTM1-215ENST00000514093 ZNF878C9JN71 531 aa16.37■□□□□ 0.21
SQSTM1-215ENST00000514093 ZNF593O00488 134 aaPredicted RBP16.37■□□□□ 0.21
SQSTM1-215ENST00000514093 NME4O00746 187 aa16.37■□□□□ 0.21
SQSTM1-215ENST00000514093 RHBDL1O75783 438 aa16.37■□□□□ 0.21
SQSTM1-215ENST00000514093 GLCEO94923 617 aa16.37■□□□□ 0.21
SQSTM1-215ENST00000514093 PF4P02776 101 aa16.37■□□□□ 0.21
SQSTM1-215ENST00000514093 PSG2P11465 335 aa16.37■□□□□ 0.21
SQSTM1-215ENST00000514093 GLRA1P23415 457 aa16.37■□□□□ 0.21
SQSTM1-215ENST00000514093 CAPZA1P52907 286 aa16.37■□□□□ 0.21
SQSTM1-215ENST00000514093 IL5RAQ01344 420 aa16.37■□□□□ 0.21
SQSTM1-215ENST00000514093 PRDX4Q13162 271 aa16.37■□□□□ 0.21
SQSTM1-215ENST00000514093 CCDC121Q6ZUS5 278 aa16.37■□□□□ 0.21
SQSTM1-215ENST00000514093 LINC00471Q8N535 108 aa16.37■□□□□ 0.21
SQSTM1-215ENST00000514093 C7orf34Q96L11 122 aa16.37■□□□□ 0.21
SQSTM1-215ENST00000514093 MUC13Q9H3R2 512 aa16.37■□□□□ 0.21
SQSTM1-215ENST00000514093 YY1AP1Q9H869 796 aa16.37■□□□□ 0.21
SQSTM1-215ENST00000514093 VGLL3A8MV65 326 aa16.36■□□□□ 0.21
SQSTM1-215ENST00000514093 IDH3BO43837 385 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms