RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF4	YKR036C	LAM4	P38800	1345 aa		5.09	□□□□□ -1.59
CAF4	YKR036C	SEC63	P14906	663 aa		5.09	□□□□□ -1.6
CAF4	YKR036C	UBA1	P22515	1024 aa	Known RBP	5.09	□□□□□ -1.6
CAF4	YKR036C	GSY1	P23337	708 aa		5.09	□□□□□ -1.6
CAF4	YKR036C	PRE8	P23639	250 aa		5.09	□□□□□ -1.6
CAF4	YKR036C	PKC1	P24583	1151 aa		5.09	□□□□□ -1.6
CAF4	YKR036C	CLB2	P24869	491 aa		5.09	□□□□□ -1.6
CAF4	YKR036C	HSP30	P25619	332 aa		5.09	□□□□□ -1.6
CAF4	YKR036C	SEC21	P32074	935 aa	Known RBP	5.09	□□□□□ -1.6
CAF4	YKR036C	BCK2	P33306	851 aa		5.09	□□□□□ -1.6
CAF4	YKR036C	HCS1	P34243	683 aa		5.09	□□□□□ -1.6
CAF4	YKR036C	YBR242W	P38331	238 aa		5.09	□□□□□ -1.6
CAF4	YKR036C	RFC3	P38629	340 aa		5.09	□□□□□ -1.6
CAF4	YKR036C	MPT5	P39016	859 aa	Known RBP RIP-Chip data	5.09	□□□□□ -1.6	not detected
CAF4	YKR036C	NOP9	P47077	666 aa	Known RBP	5.09	□□□□□ -1.6
CAF4	YKR036C	OSH6	Q02201	448 aa		5.09	□□□□□ -1.6
CAF4	YKR036C	YVH1	Q02256	364 aa	Known RBP	5.09	□□□□□ -1.6
CAF4	YKR036C	EAR1	Q03212	550 aa		5.09	□□□□□ -1.6
CAF4	YKR036C	ERB1	Q04660	807 aa	Known RBP	5.09	□□□□□ -1.6
CAF4	YKR036C	CSC1	Q06538	782 aa		5.09	□□□□□ -1.6
CAF4	YKR036C	UBX5	Q06682	500 aa		5.09	□□□□□ -1.6
CAF4	YKR036C	MLH2	Q07980	695 aa		5.09	□□□□□ -1.6
CAF4	YKR036C	YPL260W	Q08977	551 aa		5.09	□□□□□ -1.6
CAF4	YKR036C	RUP1	Q12242	671 aa		5.09	□□□□□ -1.6
CAF4	YKR036C	MDM20	Q12387	796 aa	Known RBP	5.09	□□□□□ -1.6
CAF4	YKR036C	GCN3	P14741	305 aa		5.08	□□□□□ -1.6
CAF4	YKR036C	VMA2	P16140	517 aa	Known RBP	5.08	□□□□□ -1.6
CAF4	YKR036C	TEC1	P18412	486 aa		5.08	□□□□□ -1.6
CAF4	YKR036C	EFT1	P32324	842 aa	Known RBP	5.08	□□□□□ -1.6
CAF4	YKR036C	EUG1	P32474	517 aa		5.08	□□□□□ -1.6
CAF4	YKR036C	WHI3	P34761	661 aa	Known RBP	5.08	□□□□□ -1.6
CAF4	YKR036C	YKR078W	P36158	585 aa	Known RBP	5.08	□□□□□ -1.6
CAF4	YKR036C	SSZ1	P38788	538 aa	Known RBP	5.08	□□□□□ -1.6
CAF4	YKR036C	STN1	P38960	494 aa		5.08	□□□□□ -1.6
CAF4	YKR036C	PCF11	P39081	626 aa	Predicted RBP	5.08	□□□□□ -1.6
CAF4	YKR036C	YHB1	P39676	399 aa	Known RBP	5.08	□□□□□ -1.6
CAF4	YKR036C	AST2	P39945	430 aa	Known RBP	5.08	□□□□□ -1.6
CAF4	YKR036C	ATG32	P40458	529 aa		5.08	□□□□□ -1.6
CAF4	YKR036C	IOC3	P43596	787 aa		5.08	□□□□□ -1.6
CAF4	YKR036C	SGM1	P47166	707 aa		5.08	□□□□□ -1.6
CAF4	YKR036C	CPR6	P53691	371 aa	Known RBP	5.08	□□□□□ -1.6
CAF4	YKR036C	YAF9	P53930	226 aa		5.08	□□□□□ -1.6
CAF4	YKR036C	ALD6	P54115	500 aa	Known RBP	5.08	□□□□□ -1.6
CAF4	YKR036C	HEH2	Q03281	663 aa		5.08	□□□□□ -1.6
CAF4	YKR036C	DML1	Q03652	475 aa		5.08	□□□□□ -1.6
CAF4	YKR036C	ECM30	Q06673	1274 aa		5.08	□□□□□ -1.6
CAF4	YKR036C	ZRT2	Q12436	422 aa		5.08	□□□□□ -1.6
CAF4	YKR036C	YOR131C	Q12486	218 aa		5.08	□□□□□ -1.6
CAF4	YKR036C	MPH2	P0CD99	609 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	POL3	P15436	1097 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	RPC34	P32910	317 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	PTC3	P34221	468 aa	Known RBP	5.07	□□□□□ -1.6
CAF4	YKR036C	BMH2	P34730	273 aa	Known RBP	5.07	□□□□□ -1.6
CAF4	YKR036C	KDX1	P36005	433 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	PPS1	P38148	807 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	NPT1	P39683	429 aa	Known RBP	5.07	□□□□□ -1.6
CAF4	YKR036C	FIR1	P40020	876 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	RIC1	P40395	1056 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	YFL040W	P43562	540 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	KAP114	P53067	1004 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	LSC1	P53598	329 aa	Known RBP	5.07	□□□□□ -1.6
CAF4	YKR036C	NAF1	P53919	492 aa	Known RBP	5.07	□□□□□ -1.6
CAF4	YKR036C	YML037C	Q03703	340 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	ACL4	Q03771	387 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	COA4	Q05809	96 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	TDA5	Q06417	326 aa	Known RBP	5.07	□□□□□ -1.6
CAF4	YKR036C	MCP2	Q06567	569 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	PSR2	Q07949	397 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	YAP7	Q08182	245 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	FAP7	Q12055	197 aa	Predicted RBP	5.07	□□□□□ -1.6
CAF4	YKR036C	SUT2	Q12286	268 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	BRR1	Q99177	341 aa	Predicted RBP	5.07	□□□□□ -1.6
CAF4	YKR036C	SEM1	O94742	89 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	STE6	P12866	1290 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	SRM1	P21827	482 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	COY1	P34237	679 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	NUP120	P35729	1037 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	SMC2	P38989	1170 aa	Known RBP	5.07	□□□□□ -1.6
CAF4	YKR036C	GPB2	P39717	880 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	FCY21	P40039	528 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	CAB2	P40506	365 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	MKT1	P40850	830 aa	Known RBP	5.07	□□□□□ -1.6
CAF4	YKR036C	LAM5	P43560	674 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	YFL034W	P43564	1073 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	NMD5	P46970	1048 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	IRC8	P47046	822 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	RPC17	P47076	161 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	ATP22	P50273	684 aa	Predicted RBP	5.07	□□□□□ -1.6
CAF4	YKR036C	TAD1	P53065	400 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	TMA20	P89886	181 aa	Predicted RBP	5.07	□□□□□ -1.6
CAF4	YKR036C	EEB1	Q02891	456 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	YPL034W	Q03083	165 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	GPI17	Q04080	534 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	FMP42	Q04991	504 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	RSA1	Q08932	381 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	YLR125W	Q12138	136 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	APC2	Q12440	853 aa		5.07	□□□□□ -1.6
CAF4	YKR036C	CMD1	P06787	147 aa	Known RBP	5.06	□□□□□ -1.6
CAF4	YKR036C	SSC1	P0CS90	654 aa	Known RBP	5.06	□□□□□ -1.6
CAF4	YKR036C	MSH2	P25847	964 aa		5.06	□□□□□ -1.6

Retrieved 100 of 5,963 RNA–protein pairs in 14.8 ms