RNA–Protein interactions for RNA: YDL097C

RPN6, Transcript of Essential, non-ATPase regulatory subunit of the 26S proteasome lid, yeast

Gene RPN6, Length 1,305 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN6	YDL097C	YER186C	P40101	306 aa		4.93	□□□□□ -1.62
RPN6	YDL097C	BTT1	P40314	149 aa	Predicted RBP	4.93	□□□□□ -1.62
RPN6	YDL097C	STB4	P50104	949 aa		4.93	□□□□□ -1.62
RPN6	YDL097C	ALG11	P53954	548 aa	Known RBP	4.93	□□□□□ -1.62
RPN6	YDL097C	HCA4	P20448	770 aa	Known RBP	4.92	□□□□□ -1.62
RPN6	YDL097C	KIN3	P22209	435 aa		4.92	□□□□□ -1.62
RPN6	YDL097C	HEM3	P28789	327 aa		4.92	□□□□□ -1.62
RPN6	YDL097C	PMI40	P29952	429 aa	Known RBP	4.92	□□□□□ -1.62
RPN6	YDL097C	RML2	P32611	393 aa		4.92	□□□□□ -1.62
RPN6	YDL097C	OSW5	P40219	148 aa		4.92	□□□□□ -1.62
RPN6	YDL097C	ASG1	P40467	964 aa		4.92	□□□□□ -1.62
RPN6	YDL097C	VPS25	P47142	202 aa		4.92	□□□□□ -1.62
RPN6	YDL097C	MNN10	P50108	393 aa	Known RBP	4.92	□□□□□ -1.62
RPN6	YDL097C	YNR065C	P53751	1116 aa		4.92	□□□□□ -1.62
RPN6	YDL097C	SEC5	P89102	971 aa		4.92	□□□□□ -1.62
RPN6	YDL097C	HER2	Q03557	464 aa		4.92	□□□□□ -1.62
RPN6	YDL097C	BSP1	Q06604	576 aa		4.92	□□□□□ -1.62
RPN6	YDL097C	APC11	Q12157	165 aa		4.92	□□□□□ -1.62
RPN6	YDL097C	YPL066W	Q12194	479 aa		4.92	□□□□□ -1.62
RPN6	YDL097C	DAL82	P21705	255 aa		4.91	□□□□□ -1.62
RPN6	YDL097C	ERG6	P25087	383 aa	Known RBP	4.91	□□□□□ -1.62
RPN6	YDL097C	RAD16	P31244	790 aa		4.91	□□□□□ -1.62
RPN6	YDL097C	PEP7	P32609	515 aa		4.91	□□□□□ -1.62
RPN6	YDL097C	UBP5	P39944	805 aa		4.91	□□□□□ -1.62
RPN6	YDL097C	GPD2	P41911	440 aa	Known RBP	4.91	□□□□□ -1.62
RPN6	YDL097C	SUM1	P46676	1062 aa		4.91	□□□□□ -1.62
RPN6	YDL097C	SEC16	P48415	2195 aa	Known RBP	4.91	□□□□□ -1.62
RPN6	YDL097C	SEG1	Q04279	960 aa		4.91	□□□□□ -1.62
RPN6	YDL097C	YCG1	Q06680	1035 aa		4.91	□□□□□ -1.62
RPN6	YDL097C	HRT3	Q12347	344 aa		4.91	□□□□□ -1.62
RPN6	YDL097C	RAD3	P06839	778 aa		4.9	□□□□□ -1.63
RPN6	YDL097C	RPL1A	P0CX43	217 aa	Known RBP	4.9	□□□□□ -1.63
RPN6	YDL097C	RPL1B	P0CX44	217 aa	Known RBP	4.9	□□□□□ -1.63
RPN6	YDL097C	CYS3	P31373	394 aa	Known RBP	4.9	□□□□□ -1.63
RPN6	YDL097C	GUT2	P32191	649 aa		4.9	□□□□□ -1.63
RPN6	YDL097C	PET127	P32606	800 aa		4.9	□□□□□ -1.63
RPN6	YDL097C	SKG6	P32900	734 aa	Predicted RBP	4.9	□□□□□ -1.63
RPN6	YDL097C	MRX3	P38172	270 aa		4.9	□□□□□ -1.63
RPN6	YDL097C	TIF34	P40217	347 aa	Known RBP	4.9	□□□□□ -1.63
RPN6	YDL097C	ATG3	P40344	310 aa		4.9	□□□□□ -1.63
RPN6	YDL097C	ERG10	P41338	398 aa	Known RBP	4.9	□□□□□ -1.63
RPN6	YDL097C	FIG4	P42837	879 aa		4.9	□□□□□ -1.63
RPN6	YDL097C	MNP1	P53163	194 aa	Predicted RBP	4.9	□□□□□ -1.63
RPN6	YDL097C	ROD1	Q02805	837 aa		4.9	□□□□□ -1.63
RPN6	YDL097C	CWC21	Q03375	135 aa	Known RBP	4.9	□□□□□ -1.63
RPN6	YDL097C	STE20	Q03497	939 aa	Known RBP	4.9	□□□□□ -1.63
RPN6	YDL097C	AIM44	Q99299	758 aa		4.9	□□□□□ -1.63
RPN6	YDL097C	GAL80	P04387	435 aa		4.89	□□□□□ -1.63
RPN6	YDL097C	MSF1	P08425	469 aa		4.89	□□□□□ -1.63
RPN6	YDL097C	DPH2	P32461	534 aa		4.89	□□□□□ -1.63
RPN6	YDL097C	FBP26	P32604	452 aa		4.89	□□□□□ -1.63
RPN6	YDL097C	PGM1	P33401	570 aa	Known RBP	4.89	□□□□□ -1.63
RPN6	YDL097C	UBS1	P38290	277 aa		4.89	□□□□□ -1.63
RPN6	YDL097C	ALG2	P43636	503 aa		4.89	□□□□□ -1.63
RPN6	YDL097C	NUP84	P52891	726 aa		4.89	□□□□□ -1.63
RPN6	YDL097C	TDA7	P53882	636 aa	Predicted RBP	4.89	□□□□□ -1.63
RPN6	YDL097C	ENT2	Q05785	613 aa		4.89	□□□□□ -1.63
RPN6	YDL097C	FRA1	Q07825	749 aa		4.89	□□□□□ -1.63
RPN6	YDL097C	NOC3	Q07896	663 aa	Predicted RBP	4.89	□□□□□ -1.63
RPN6	YDL097C	ZPS1	Q12512	249 aa		4.89	□□□□□ -1.63
RPN6	YDL097C	YBL113C	Q7M4S9	792 aa		4.89	□□□□□ -1.63
RPN6	YDL097C	OPI1	P21957	404 aa		4.88	□□□□□ -1.63
RPN6	YDL097C	ECM21	P38167	1117 aa	Known RBP	4.88	□□□□□ -1.63
RPN6	YDL097C	PFS1	P38872	237 aa		4.88	□□□□□ -1.63
RPN6	YDL097C	FYV8	P46949	817 aa	Known RBP	4.88	□□□□□ -1.63
RPN6	YDL097C	CLU1	Q03690	1277 aa	Known RBP	4.88	□□□□□ -1.63
RPN6	YDL097C	YDL057W	Q07379	328 aa		4.88	□□□□□ -1.63
RPN6	YDL097C	YPL272C	Q08984	517 aa		4.88	□□□□□ -1.63
RPN6	YDL097C	COX3	P00420	269 aa		4.87	□□□□□ -1.63
RPN6	YDL097C	VPS3	P23643	1011 aa		4.87	□□□□□ -1.63
RPN6	YDL097C	PRP22	P24384	1145 aa	Known RBP	4.87	□□□□□ -1.63
RPN6	YDL097C	PHO87	P25360	923 aa		4.87	□□□□□ -1.63
RPN6	YDL097C	RRN6	P32786	894 aa		4.87	□□□□□ -1.63
RPN6	YDL097C	SIF2	P38262	535 aa		4.87	□□□□□ -1.63
RPN6	YDL097C	VID24	P38263	362 aa		4.87	□□□□□ -1.63
RPN6	YDL097C	YIL161W	P40449	235 aa	Known RBP	4.87	□□□□□ -1.63
RPN6	YDL097C	FIS1	P40515	155 aa		4.87	□□□□□ -1.63
RPN6	YDL097C	VTC4	P47075	721 aa		4.87	□□□□□ -1.63
RPN6	YDL097C	ADE12	P80210	433 aa	Known RBP	4.87	□□□□□ -1.63
RPN6	YDL097C	RSM10	Q03201	203 aa		4.87	□□□□□ -1.63
RPN6	YDL097C	TDA6	Q06466	467 aa		4.87	□□□□□ -1.63
RPN6	YDL097C	NDJ1	Q12366	352 aa		4.87	□□□□□ -1.63
RPN6	YDL097C	ILV1	P00927	576 aa	Known RBP	4.86	□□□□□ -1.63
RPN6	YDL097C	REV1	P12689	985 aa		4.86	□□□□□ -1.63
RPN6	YDL097C	CLN3	P13365	580 aa		4.86	□□□□□ -1.63
RPN6	YDL097C	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	4.86	□□□□□ -1.63	not detected
RPN6	YDL097C	SOH1	P38633	127 aa		4.86	□□□□□ -1.63
RPN6	YDL097C	ERP5	P38819	212 aa		4.86	□□□□□ -1.63
RPN6	YDL097C	FET5	P43561	622 aa		4.86	□□□□□ -1.63
RPN6	YDL097C	POL31	P46957	487 aa		4.86	□□□□□ -1.63
RPN6	YDL097C	UBX6	P47049	396 aa		4.86	□□□□□ -1.63
RPN6	YDL097C	COQ6	P53318	479 aa		4.86	□□□□□ -1.63
RPN6	YDL097C	DIP5	P53388	608 aa		4.86	□□□□□ -1.63
RPN6	YDL097C	SUN4	P53616	420 aa		4.86	□□□□□ -1.63
RPN6	YDL097C	TOF2	Q02208	771 aa		4.86	□□□□□ -1.63
RPN6	YDL097C	YMR187C	Q03236	431 aa		4.86	□□□□□ -1.63
RPN6	YDL097C	CDA2	Q06703	312 aa		4.86	□□□□□ -1.63
RPN6	YDL097C	RPN8	Q08723	338 aa	Known RBP	4.86	□□□□□ -1.63
RPN6	YDL097C	SSF2	Q12153	453 aa	Predicted RBP	4.86	□□□□□ -1.63
RPN6	YDL097C	RKM5	Q12367	367 aa		4.86	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 52.3 ms