RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 ACAD11Q709F0 780 aa4.12□□□□□ -1.75
VIM-210ENST00000637053 CLEC10AQ8IUN9 316 aa4.12□□□□□ -1.75
VIM-210ENST00000637053 MAP4K3Q8IVH8 894 aa4.12□□□□□ -1.75
VIM-210ENST00000637053 GAS2L2Q8NHY3 880 aa4.12□□□□□ -1.75
VIM-210ENST00000637053 ASIC4Q96FT7 647 aa4.12□□□□□ -1.75
VIM-210ENST00000637053 FAM83CQ9BQN1 747 aa4.12□□□□□ -1.75
VIM-210ENST00000637053 PRM3Q9NNZ6 103 aa4.12□□□□□ -1.75
VIM-210ENST00000637053 TLR7Q9NYK1 1049 aaKnown RBP4.12□□□□□ -1.75
VIM-210ENST00000637053 KLK14Q9P0G3 267 aa4.12□□□□□ -1.75
VIM-210ENST00000637053 USP20Q9Y2K6 914 aa4.12□□□□□ -1.75
VIM-210ENST00000637053 ANKRD62A6NC57 917 aa4.11□□□□□ -1.75
VIM-210ENST00000637053 RBM10P98175 930 aaKnown RBP4.11□□□□□ -1.75
VIM-210ENST00000637053 KCNA1Q09470 495 aa4.11□□□□□ -1.75
VIM-210ENST00000637053 UVSSAQ2YD98 709 aa4.11□□□□□ -1.75
VIM-210ENST00000637053 TXNDC11Q6PKC3 985 aa4.11□□□□□ -1.75
VIM-210ENST00000637053 ADAMTSL4Q6UY14 1074 aa4.11□□□□□ -1.75
VIM-210ENST00000637053 PROSER2Q86WR7 435 aaPredicted RBP4.11□□□□□ -1.75
VIM-210ENST00000637053 FAM20CQ8IXL6 584 aa4.11□□□□□ -1.75
VIM-210ENST00000637053 CHMP7Q8WUX9 453 aaPredicted RBP4.11□□□□□ -1.75
VIM-210ENST00000637053 SCG3Q8WXD2 468 aaKnown RBP4.11□□□□□ -1.75
VIM-210ENST00000637053 NSUN5Q96P11 429 aaKnown RBP4.11□□□□□ -1.75
VIM-210ENST00000637053 CEP41Q9BYV8 373 aa4.11□□□□□ -1.75
VIM-210ENST00000637053 MYH16Q9H6N6 1097 aa4.11□□□□□ -1.75
VIM-210ENST00000637053 PIM2Q9P1W9 311 aa4.11□□□□□ -1.75
VIM-210ENST00000637053 CCDC39Q9UFE4 941 aa4.11□□□□□ -1.75
VIM-210ENST00000637053 CLSPNQ9HAW4 1339 aa4.11□□□□□ -1.75
VIM-210ENST00000637053 LINC01387J3KSC0 135 aa4.1□□□□□ -1.75
VIM-210ENST00000637053 TPD52L2O43399 206 aaKnown RBP4.1□□□□□ -1.75
VIM-210ENST00000637053 EPB42P16452 691 aa4.1□□□□□ -1.75
VIM-210ENST00000637053 CD68P34810 354 aaPredicted RBP4.1□□□□□ -1.75
VIM-210ENST00000637053 SPTY2D1Q68D10 685 aaPredicted RBP4.1□□□□□ -1.75
VIM-210ENST00000637053 BEND4Q6ZU67 534 aa4.1□□□□□ -1.75
VIM-210ENST00000637053 TRIM50Q86XT4 487 aa4.1□□□□□ -1.75
VIM-210ENST00000637053 SHISA5Q8N114 240 aa4.1□□□□□ -1.75
VIM-210ENST00000637053 OGFOD1Q8N543 542 aa4.1□□□□□ -1.75
VIM-210ENST00000637053 DRC1Q96MC2 740 aa4.1□□□□□ -1.75
VIM-210ENST00000637053 PPME1Q9Y570 386 aa4.1□□□□□ -1.75
VIM-210ENST00000637053 OPLAHO14841 1288 aa4.09□□□□□ -1.75
VIM-210ENST00000637053 DDX3YO15523 660 aaKnown RBP4.09□□□□□ -1.75
VIM-210ENST00000637053 MMP20O60882 483 aa4.09□□□□□ -1.75
VIM-210ENST00000637053 BMP3P12645 472 aa4.09□□□□□ -1.75
VIM-210ENST00000637053 FAM50AQ14320 339 aaKnown RBP4.09□□□□□ -1.75
VIM-210ENST00000637053 GORABQ5T7V8 394 aa4.09□□□□□ -1.75
VIM-210ENST00000637053 KRTAP5-3Q6L8H2 238 aa4.09□□□□□ -1.75
VIM-210ENST00000637053 FAM43BQ6ZT52 329 aaPredicted RBP4.09□□□□□ -1.75
VIM-210ENST00000637053 TMTC2Q8N394 836 aa4.09□□□□□ -1.75
VIM-210ENST00000637053 DCAF11Q8TEB1 546 aa4.09□□□□□ -1.75
VIM-210ENST00000637053 MFSD14AQ96MC6 490 aa4.09□□□□□ -1.75
VIM-210ENST00000637053 HIRIP3Q9BW71 556 aaPredicted RBP4.09□□□□□ -1.75
VIM-210ENST00000637053 C11orf16Q9NQ32 467 aa4.09□□□□□ -1.75
VIM-210ENST00000637053 SUGT1Q9Y2Z0 365 aa4.09□□□□□ -1.75
VIM-210ENST00000637053 LAS1LQ9Y4W2 734 aaKnown RBP4.09□□□□□ -1.75
VIM-210ENST00000637053 DBX1A6NMT0 343 aa4.08□□□□□ -1.76
VIM-210ENST00000637053 ADAM11O75078 769 aa4.08□□□□□ -1.76
VIM-210ENST00000637053 LGR5O75473 907 aa4.08□□□□□ -1.76
VIM-210ENST00000637053 MICAL2O94851 1124 aa4.08□□□□□ -1.76
VIM-210ENST00000637053 PRNPP04156 253 aa4.08□□□□□ -1.76
VIM-210ENST00000637053 F13BP05160 661 aa4.08□□□□□ -1.76
VIM-210ENST00000637053 NEFMP07197 916 aa4.08□□□□□ -1.76
VIM-210ENST00000637053 JUNBP17275 347 aaPredicted RBP4.08□□□□□ -1.76
VIM-210ENST00000637053 RASA1P20936 1047 aa4.08□□□□□ -1.76
VIM-210ENST00000637053 PREPP48147 710 aa4.08□□□□□ -1.76
VIM-210ENST00000637053 ATP1A2P50993 1020 aa4.08□□□□□ -1.76
VIM-210ENST00000637053 ARSDP51689 593 aa4.08□□□□□ -1.76
VIM-210ENST00000637053 SIX5Q8N196 739 aa4.08□□□□□ -1.76
VIM-210ENST00000637053 FNBP4Q8N3X1 1017 aaPredicted RBP4.08□□□□□ -1.76
VIM-210ENST00000637053 LARGE2Q8N3Y3 721 aa4.08□□□□□ -1.76
VIM-210ENST00000637053 SREK1Q8WXA9 508 aaKnown RBP4.08□□□□□ -1.76
VIM-210ENST00000637053 ZNF594Q96JF6 807 aaPredicted RBP4.08□□□□□ -1.76
VIM-210ENST00000637053 CARD10Q9BWT7 1032 aa4.08□□□□□ -1.76
VIM-210ENST00000637053 KCNF1Q9H3M0 494 aa4.08□□□□□ -1.76
VIM-210ENST00000637053 KIAA1522Q9P206 1035 aaPredicted RBP4.08□□□□□ -1.76
VIM-210ENST00000637053 ANGEL1Q9UNK9 670 aaKnown RBP4.08□□□□□ -1.76
VIM-210ENST00000637053 RTCBQ9Y3I0 505 aaKnown RBP4.08□□□□□ -1.76
VIM-210ENST00000637053 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.08□□□□□ -1.76
VIM-210ENST00000637053 RBM47A0AV96 593 aaKnown RBP4.07□□□□□ -1.76
VIM-210ENST00000637053 USP17L3A6NCW0 530 aa4.07□□□□□ -1.76
VIM-210ENST00000637053 USP17L4A6NCW7 530 aa4.07□□□□□ -1.76
VIM-210ENST00000637053 PALM3A6NDB9 673 aaPredicted RBP4.07□□□□□ -1.76
VIM-210ENST00000637053 PPP1R15AO75807 674 aaPredicted RBP4.07□□□□□ -1.76
VIM-210ENST00000637053 PAPLNO95428 1278 aa4.07□□□□□ -1.76
VIM-210ENST00000637053 EGFRP00533 1210 aa4.07□□□□□ -1.76
VIM-210ENST00000637053 GHRHP01286 108 aa4.07□□□□□ -1.76
VIM-210ENST00000637053 HOXD8P13378 290 aaPredicted RBP4.07□□□□□ -1.76
VIM-210ENST00000637053 FOSL1P15407 271 aa4.07□□□□□ -1.76
VIM-210ENST00000637053 ARID4AP29374 1257 aaPredicted RBP4.07□□□□□ -1.76
VIM-210ENST00000637053 DGKZQ13574 1117 aa4.07□□□□□ -1.76
VIM-210ENST00000637053 MCM6Q14566 821 aa4.07□□□□□ -1.76
VIM-210ENST00000637053 USP17L2Q6R6M4 530 aa4.07□□□□□ -1.76
VIM-210ENST00000637053 PPP1R3FQ6ZSY5 799 aaPredicted RBP4.07□□□□□ -1.76
VIM-210ENST00000637053 SND1Q7KZF4 910 aaKnown RBP eCLIP4.07□□□□□ -1.761e-29■■■□□ 15.5
VIM-210ENST00000637053 USP17L1Q7RTZ2 530 aa4.07□□□□□ -1.76
VIM-210ENST00000637053 PLEKHM2Q8IWE5 1019 aa4.07□□□□□ -1.76
VIM-210ENST00000637053 MICAL1Q8TDZ2 1067 aa4.07□□□□□ -1.76
VIM-210ENST00000637053 UBASH3BQ8TF42 649 aa4.07□□□□□ -1.76
VIM-210ENST00000637053 SGSM3Q96HU1 749 aa4.07□□□□□ -1.76
VIM-210ENST00000637053 MUC3BQ9H195 1237 aa4.07□□□□□ -1.76
VIM-210ENST00000637053 CARMIL2Q6F5E8 1435 aa4.06□□□□□ -1.76
VIM-210ENST00000637053 XYLBO75191 536 aa4.06□□□□□ -1.76
VIM-210ENST00000637053 PSAPP07602 524 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 172.2 ms