RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 C8orf74Q6P047 294 aa16.93■□□□□ 0.3
COL5A1-208ENST00000618395 NAPGQ99747 312 aaPredicted RBP16.93■□□□□ 0.3
COL5A1-208ENST00000618395 CCDC42Q96M95 316 aa16.93■□□□□ 0.3
COL5A1-208ENST00000618395 POLE2P56282 527 aa16.93■□□□□ 0.3
COL5A1-208ENST00000618395 ATP2B2Q01814 1243 aa16.93■□□□□ 0.3
COL5A1-208ENST00000618395 TTC19Q6DKK2 380 aaPredicted RBP16.93■□□□□ 0.3
COL5A1-208ENST00000618395 UTP14AQ9BVJ6 771 aaKnown RBP16.93■□□□□ 0.3
COL5A1-208ENST00000618395 MED4Q9NPJ6 270 aa16.93■□□□□ 0.3
COL5A1-208ENST00000618395 SESN3P58005 492 aa16.92■□□□□ 0.3
COL5A1-208ENST00000618395 EXOSC9Q06265 439 aaKnown RBP16.92■□□□□ 0.3
COL5A1-208ENST00000618395 BAG1Q99933 345 aaPredicted RBP16.92■□□□□ 0.3
COL5A1-208ENST00000618395 CCDC122Q5T0U0 273 aa16.92■□□□□ 0.3
COL5A1-208ENST00000618395 IWS1Q96ST2 819 aa16.92■□□□□ 0.3
COL5A1-208ENST00000618395 NKTRP30414 1462 aaKnown RBP16.92■□□□□ 0.3
COL5A1-208ENST00000618395 PHEXP78562 749 aa16.92■□□□□ 0.3
COL5A1-208ENST00000618395 NUCB1Q02818 461 aa16.92■□□□□ 0.3
COL5A1-208ENST00000618395 CNGA4Q8IV77 575 aa16.92■□□□□ 0.3
COL5A1-208ENST00000618395 NUTM2FA1L443 756 aa16.92■□□□□ 0.3
COL5A1-208ENST00000618395 KCNG4Q8TDN1 519 aa16.92■□□□□ 0.3
COL5A1-208ENST00000618395 DNAJC25Q9H1X3 360 aa16.92■□□□□ 0.3
COL5A1-208ENST00000618395 GUCY1B3Q02153 619 aa16.91■□□□□ 0.3
COL5A1-208ENST00000618395 SYF2O95926 243 aaKnown RBP16.91■□□□□ 0.3
COL5A1-208ENST00000618395 INF2Q27J81 1249 aa16.91■□□□□ 0.3
COL5A1-208ENST00000618395 PAIP2BQ9ULR5 123 aaKnown RBP16.91■□□□□ 0.3
COL5A1-208ENST00000618395 CALML4Q96GE6 196 aa16.91■□□□□ 0.3
COL5A1-208ENST00000618395 RANBP1P43487 201 aa16.91■□□□□ 0.3
COL5A1-208ENST00000618395 ESRRGP62508 458 aa16.91■□□□□ 0.3
COL5A1-208ENST00000618395 A0A087WZG4 1122 aa16.91■□□□□ 0.3
COL5A1-208ENST00000618395 BRD3Q15059 726 aa16.91■□□□□ 0.3
COL5A1-208ENST00000618395 ARMC2Q8NEN0 867 aa16.91■□□□□ 0.3
COL5A1-208ENST00000618395 APOEP02649 317 aa16.9■□□□□ 0.3
COL5A1-208ENST00000618395 PSMD7P51665 324 aa16.9■□□□□ 0.3
COL5A1-208ENST00000618395 NUTM2DQ5VT03 806 aaPredicted RBP16.9■□□□□ 0.3
COL5A1-208ENST00000618395 EXOC1Q9NV70 894 aa16.9■□□□□ 0.3
COL5A1-208ENST00000618395 RAD50Q92878 1312 aa16.9■□□□□ 0.3
COL5A1-208ENST00000618395 MRPL46Q9H2W6 279 aaKnown RBP16.9■□□□□ 0.3
COL5A1-208ENST00000618395 TCP11L1Q9NUJ3 509 aa16.9■□□□□ 0.3
COL5A1-208ENST00000618395 FKBP4Q02790 459 aaKnown RBP eCLIP16.9■□□□□ 0.3
COL5A1-208ENST00000618395 MCTP2Q6DN12 878 aa16.9■□□□□ 0.3
COL5A1-208ENST00000618395 CNPY2Q9Y2B0 182 aa16.9■□□□□ 0.3
COL5A1-208ENST00000618395 I3L4J1 428 aa16.9■□□□□ 0.3
COL5A1-208ENST00000618395 CAPS2Q9BXY5 557 aa16.9■□□□□ 0.3
COL5A1-208ENST00000618395 PPANQ9NQ55 473 aaKnown RBP16.9■□□□□ 0.3
COL5A1-208ENST00000618395 CCDC68Q9H2F9 335 aa16.9■□□□□ 0.3
COL5A1-208ENST00000618395 MYH10P35580 1976 aa16.89■□□□□ 0.3
COL5A1-208ENST00000618395 HGSO14964 777 aaPredicted RBP16.89■□□□□ 0.29
COL5A1-208ENST00000618395 LMOD1P29536 600 aaPredicted RBP16.89■□□□□ 0.29
COL5A1-208ENST00000618395 TNIP1Q15025 636 aa16.89■□□□□ 0.29
COL5A1-208ENST00000618395 ANKRD20A3Q5VUR7 823 aa16.89■□□□□ 0.29
COL5A1-208ENST00000618395 BCAS4Q8TDM0 211 aa16.89■□□□□ 0.29
COL5A1-208ENST00000618395 SSRP1Q08945 709 aaKnown RBP16.89■□□□□ 0.29
COL5A1-208ENST00000618395 SYNCQ9H7C4 482 aa16.89■□□□□ 0.29
COL5A1-208ENST00000618395 ELP1O95163 1332 aa16.89■□□□□ 0.29
COL5A1-208ENST00000618395 PRPF40BQ6NWY9 871 aaKnown RBP16.89■□□□□ 0.29
COL5A1-208ENST00000618395 IDEP14735 1019 aa16.89■□□□□ 0.29
COL5A1-208ENST00000618395 MPHOSPH8Q99549 860 aa16.89■□□□□ 0.29
COL5A1-208ENST00000618395 DRC3Q9H069 523 aa16.89■□□□□ 0.29
COL5A1-208ENST00000618395 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.89■□□□□ 0.29
COL5A1-208ENST00000618395 STXBP4Q6ZWJ1 553 aa16.88■□□□□ 0.29
COL5A1-208ENST00000618395 DYNC1I2Q13409 638 aaKnown RBP16.88■□□□□ 0.29
COL5A1-208ENST00000618395 RAB3GAP1Q15042 981 aa16.88■□□□□ 0.29
COL5A1-208ENST00000618395 ZNF428Q96B54 188 aa16.88■□□□□ 0.29
COL5A1-208ENST00000618395 GLRX3O76003 335 aaKnown RBP16.88■□□□□ 0.29
COL5A1-208ENST00000618395 MTMR3Q13615 1198 aa16.88■□□□□ 0.29
COL5A1-208ENST00000618395 KLHL14Q9P2G3 628 aa16.88■□□□□ 0.29
COL5A1-208ENST00000618395 GRAMD4Q6IC98 578 aa16.88■□□□□ 0.29
COL5A1-208ENST00000618395 AFAP1L2Q8N4X5 818 aa16.88■□□□□ 0.29
COL5A1-208ENST00000618395 FAM71BQ8TC56 605 aa16.88■□□□□ 0.29
COL5A1-208ENST00000618395 HDAC9Q9UKV0 1011 aa16.88■□□□□ 0.29
COL5A1-208ENST00000618395 RNF40O75150 1001 aa16.88■□□□□ 0.29
COL5A1-208ENST00000618395 ERCC5P28715 1186 aaPredicted RBP16.88■□□□□ 0.29
COL5A1-208ENST00000618395 IRX1P78414 480 aaPredicted RBP16.88■□□□□ 0.29
COL5A1-208ENST00000618395 NUDCD3Q8IVD9 361 aa16.88■□□□□ 0.29
COL5A1-208ENST00000618395 SLC24A3Q9HC58 644 aa16.88■□□□□ 0.29
COL5A1-208ENST00000618395 TTC21AQ8NDW8 1320 aa16.88■□□□□ 0.29
COL5A1-208ENST00000618395 MYO10Q9HD67 2058 aa16.88■□□□□ 0.29
COL5A1-208ENST00000618395 IFNKQ9P0W0 207 aa16.88■□□□□ 0.29
COL5A1-208ENST00000618395 ARMC9Q7Z3E5 817 aa16.88■□□□□ 0.29
COL5A1-208ENST00000618395 MRPS9P82933 396 aaKnown RBP16.87■□□□□ 0.29
COL5A1-208ENST00000618395 DENND2CQ68D51 928 aa16.87■□□□□ 0.29
COL5A1-208ENST00000618395 SNX16P57768 344 aa16.87■□□□□ 0.29
COL5A1-208ENST00000618395 FBXO41Q8TF61 875 aa16.87■□□□□ 0.29
COL5A1-208ENST00000618395 CARD6Q9BX69 1037 aa16.87■□□□□ 0.29
COL5A1-208ENST00000618395 SOGA1O94964 1423 aa16.87■□□□□ 0.29
COL5A1-208ENST00000618395 BAG2O95816 211 aa16.87■□□□□ 0.29
COL5A1-208ENST00000618395 SPDL1Q96EA4 605 aa16.87■□□□□ 0.29
COL5A1-208ENST00000618395 GOLGA8KD6RF30 607 aa16.87■□□□□ 0.29
COL5A1-208ENST00000618395 LRRC27Q9C0I9 530 aa16.87■□□□□ 0.29
COL5A1-208ENST00000618395 SERPINI2O75830 405 aa16.86■□□□□ 0.29
COL5A1-208ENST00000618395 CNGA1P29973 690 aa16.86■□□□□ 0.29
COL5A1-208ENST00000618395 IMPACTQ9P2X3 320 aa16.86■□□□□ 0.29
COL5A1-208ENST00000618395 TBC1D9Q6ZT07 1266 aa16.86■□□□□ 0.29
COL5A1-208ENST00000618395 A0A087WUV0 522 aaPredicted RBP16.86■□□□□ 0.29
COL5A1-208ENST00000618395 AKR1B15C9JRZ8 316 aaPredicted RBP16.86■□□□□ 0.29
COL5A1-208ENST00000618395 HNRNPCP07910 306 aaKnown RBP eCLIP16.86■□□□□ 0.29
COL5A1-208ENST00000618395 LMNB2Q03252 620 aa16.86■□□□□ 0.29
COL5A1-208ENST00000618395 PAK2Q13177 524 aa16.86■□□□□ 0.29
COL5A1-208ENST00000618395 RPAP2Q8IXW5 612 aaPredicted RBP16.86■□□□□ 0.29
COL5A1-208ENST00000618395 LOC102724159A0A0B4J2E5 919 aa16.86■□□□□ 0.29
COL5A1-208ENST00000618395 PWP2Q15269 919 aaKnown RBP16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms