RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 ZSCAN25Q6NSZ9 544 aa12.05□□□□□ -0.48
LIG1-220ENST00000601091 LMBR1LQ6UX01 489 aa12.05□□□□□ -0.48
LIG1-220ENST00000601091 RASEFQ8IZ41 740 aa12.05□□□□□ -0.48
LIG1-220ENST00000601091 SUCLG2Q96I99 432 aa12.05□□□□□ -0.48
LIG1-220ENST00000601091 LSG1Q9H089 658 aaKnown RBP12.05□□□□□ -0.48
LIG1-220ENST00000601091 DONSONQ9NYP3 566 aa12.05□□□□□ -0.48
LIG1-220ENST00000601091 CLIP2Q9UDT6 1046 aa12.05□□□□□ -0.48
LIG1-220ENST00000601091 NCOA3Q9Y6Q9 1424 aa12.05□□□□□ -0.48
LIG1-220ENST00000601091 PAX7P23759 505 aa12.04□□□□□ -0.48
LIG1-220ENST00000601091 ZNF790Q6PG37 636 aa12.04□□□□□ -0.48
LIG1-220ENST00000601091 Q6ZUG5 572 aa12.04□□□□□ -0.48
LIG1-220ENST00000601091 CCDC85AQ96PX6 553 aaPredicted RBP12.04□□□□□ -0.48
LIG1-220ENST00000601091 CWC25Q9NXE8 425 aaPredicted RBP12.04□□□□□ -0.48
LIG1-220ENST00000601091 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.04□□□□□ -0.48
LIG1-220ENST00000601091 ZDHHC9Q9Y397 364 aa12.04□□□□□ -0.48
LIG1-220ENST00000601091 RHBDL3P58872 404 aa12.04□□□□□ -0.48
LIG1-220ENST00000601091 PTH1RQ03431 593 aa12.04□□□□□ -0.48
LIG1-220ENST00000601091 TYRO3Q06418 890 aa12.04□□□□□ -0.48
LIG1-220ENST00000601091 ARHGEF1Q92888 912 aaKnown RBP12.04□□□□□ -0.48
LIG1-220ENST00000601091 LRRC2Q9BYS8 371 aa12.04□□□□□ -0.48
LIG1-220ENST00000601091 STRN4Q9NRL3 753 aa12.04□□□□□ -0.48
LIG1-220ENST00000601091 CTDP1Q9Y5B0 961 aaPredicted RBP12.04□□□□□ -0.48
LIG1-220ENST00000601091 CCP110O43303 1012 aa12.04□□□□□ -0.48
LIG1-220ENST00000601091 MECOMQ03112 1051 aa12.04□□□□□ -0.48
LIG1-220ENST00000601091 DHX8Q14562 1220 aaKnown RBP12.04□□□□□ -0.48
LIG1-220ENST00000601091 ANO6Q4KMQ2 910 aa12.04□□□□□ -0.48
LIG1-220ENST00000601091 RASSF4Q9H2L5 321 aa12.04□□□□□ -0.48
LIG1-220ENST00000601091 CPSF2Q9P2I0 782 aaKnown RBP12.04□□□□□ -0.48
LIG1-220ENST00000601091 ARHGEF28Q8N1W1 1705 aaKnown RBP12.04□□□□□ -0.48
LIG1-220ENST00000601091 CYP2E1P05181 493 aaPredicted RBP12.03□□□□□ -0.48
LIG1-220ENST00000601091 RPS6KB1P23443 525 aa12.03□□□□□ -0.48
LIG1-220ENST00000601091 MEX3CQ5U5Q3 659 aaKnown RBP12.03□□□□□ -0.48
LIG1-220ENST00000601091 KLHDC4Q8TBB5 520 aa12.03□□□□□ -0.48
LIG1-220ENST00000601091 C8orf76Q96K31 380 aa12.03□□□□□ -0.48
LIG1-220ENST00000601091 SART3Q15020 963 aaKnown RBP12.03□□□□□ -0.48
LIG1-220ENST00000601091 ZBTB3Q9H5J0 574 aa12.03□□□□□ -0.48
LIG1-220ENST00000601091 CDKL5O76039 1030 aa12.03□□□□□ -0.48
LIG1-220ENST00000601091 PIP4K2AP48426 406 aaPredicted RBP12.03□□□□□ -0.48
LIG1-220ENST00000601091 TFCP2Q12800 502 aa12.03□□□□□ -0.48
LIG1-220ENST00000601091 POLA2Q14181 598 aa12.03□□□□□ -0.48
LIG1-220ENST00000601091 CCAR1Q8IX12 1150 aaKnown RBP12.03□□□□□ -0.48
LIG1-220ENST00000601091 ZSWIM6Q9HCJ5 1215 aa12.03□□□□□ -0.48
LIG1-220ENST00000601091 SHPRHQ149N8 1683 aa12.03□□□□□ -0.48
LIG1-220ENST00000601091 TMCO5BA8MYB1 307 aa12.03□□□□□ -0.48
LIG1-220ENST00000601091 PDCL2Q8N4E4 241 aa12.03□□□□□ -0.48
LIG1-220ENST00000601091 FSIP1Q8NA03 581 aa12.03□□□□□ -0.48
LIG1-220ENST00000601091 CXorf38Q8TB03 319 aa12.03□□□□□ -0.48
LIG1-220ENST00000601091 EAF2Q96CJ1 260 aaPredicted RBP12.03□□□□□ -0.48
LIG1-220ENST00000601091 ATP10DQ9P241 1426 aa12.02□□□□□ -0.48
LIG1-220ENST00000601091 CRB1P82279 1406 aa12.02□□□□□ -0.48
LIG1-220ENST00000601091 ME3Q16798 604 aa12.02□□□□□ -0.48
LIG1-220ENST00000601091 FAM173BQ6P4H8 233 aa12.02□□□□□ -0.48
LIG1-220ENST00000601091 METTL22Q9BUU2 404 aaPredicted RBP12.02□□□□□ -0.48
LIG1-220ENST00000601091 KIF1CO43896 1103 aaKnown RBP12.02□□□□□ -0.49
LIG1-220ENST00000601091 CAPN15O75808 1086 aa12.02□□□□□ -0.49
LIG1-220ENST00000601091 CHRNA2Q15822 529 aa12.02□□□□□ -0.49
LIG1-220ENST00000601091 CCDC186Q7Z3E2 898 aa12.02□□□□□ -0.49
LIG1-220ENST00000601091 RASSF8Q8NHQ8 419 aa12.02□□□□□ -0.49
LIG1-220ENST00000601091 CPS1P31327 1500 aa12.02□□□□□ -0.49
LIG1-220ENST00000601091 STX1AQ16623 288 aa12.02□□□□□ -0.49
LIG1-220ENST00000601091 PI4K2BQ8TCG2 481 aa12.02□□□□□ -0.49
LIG1-220ENST00000601091 ORAI2Q96SN7 254 aa12.02□□□□□ -0.49
LIG1-220ENST00000601091 REREQ9P2R6 1566 aa12.01□□□□□ -0.49
LIG1-220ENST00000601091 USP31Q70CQ4 1352 aa12.01□□□□□ -0.49
LIG1-220ENST00000601091 U2AF2P26368 475 aaKnown RBP eCLIP12.01□□□□□ -0.49
LIG1-220ENST00000601091 IL15P40933 162 aaPredicted RBP12.01□□□□□ -0.49
LIG1-220ENST00000601091 GCKRQ14397 625 aa12.01□□□□□ -0.49
LIG1-220ENST00000601091 METTL24Q5JXM2 366 aa12.01□□□□□ -0.49
LIG1-220ENST00000601091 C16orf45Q96MC5 204 aaPredicted RBP12.01□□□□□ -0.49
LIG1-220ENST00000601091 MTMR6Q9Y217 621 aa12.01□□□□□ -0.49
LIG1-220ENST00000601091 ZNF213O14771 459 aa12.01□□□□□ -0.49
LIG1-220ENST00000601091 PPP1R12AO14974 1030 aaPredicted RBP12.01□□□□□ -0.49
LIG1-220ENST00000601091 NEMFO60524 1076 aa12.01□□□□□ -0.49
LIG1-220ENST00000601091 IDH1O75874 414 aaKnown RBP12.01□□□□□ -0.49
LIG1-220ENST00000601091 SERPINC1P01008 464 aa12.01□□□□□ -0.49
LIG1-220ENST00000601091 TPM1P09493 284 aa12.01□□□□□ -0.49
LIG1-220ENST00000601091 IFIT5Q13325 482 aaKnown RBP12.01□□□□□ -0.49
LIG1-220ENST00000601091 DHX32Q7L7V1 743 aaKnown RBP12.01□□□□□ -0.49
LIG1-220ENST00000601091 CXorf56Q9H5V9 222 aa12.01□□□□□ -0.49
LIG1-220ENST00000601091 SNRKQ9NRH2 765 aa12.01□□□□□ -0.49
LIG1-220ENST00000601091 KDRP35968 1356 aa12.01□□□□□ -0.49
LIG1-220ENST00000601091 SMTNL1A8MU46 457 aa12.01□□□□□ -0.49
LIG1-220ENST00000601091 PPFIA3O75145 1194 aa12.01□□□□□ -0.49
LIG1-220ENST00000601091 PTPN14Q15678 1187 aa12.01□□□□□ -0.49
LIG1-220ENST00000601091 CCDC91Q7Z6B0 441 aa12.01□□□□□ -0.49
LIG1-220ENST00000601091 KCNV2Q8TDN2 545 aa12.01□□□□□ -0.49
LIG1-220ENST00000601091 DCAF5Q96JK2 942 aa12.01□□□□□ -0.49
LIG1-220ENST00000601091 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.01□□□□□ -0.49
LIG1-220ENST00000601091 V9GYY5 206 aaPredicted RBP12.01□□□□□ -0.49
LIG1-220ENST00000601091 SH3BP5O60239 455 aa12□□□□□ -0.49
LIG1-220ENST00000601091 LMNB1P20700 586 aa12□□□□□ -0.49
LIG1-220ENST00000601091 ABCD1P33897 745 aa12□□□□□ -0.49
LIG1-220ENST00000601091 INF2Q27J81 1249 aa12□□□□□ -0.49
LIG1-220ENST00000601091 TNNI3KQ59H18 835 aa12□□□□□ -0.49
LIG1-220ENST00000601091 MICALL1Q8N3F8 863 aa12□□□□□ -0.49
LIG1-220ENST00000601091 PIBF1Q8WXW3 757 aa12□□□□□ -0.49
LIG1-220ENST00000601091 MTA3Q9BTC8 594 aa12□□□□□ -0.49
LIG1-220ENST00000601091 DNAJC25Q9H1X3 360 aa12□□□□□ -0.49
LIG1-220ENST00000601091 BSDC1Q9NW68 430 aaPredicted RBP12□□□□□ -0.49
LIG1-220ENST00000601091 FPGT-TNNI3KV9GXZ4 949 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms