RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 SCN4AP35499 1836 aa18.59■□□□□ 0.57
TRIM28-207ENST00000597136 CIAO1O76071 339 aa18.59■□□□□ 0.57
TRIM28-207ENST00000597136 PDE8BO95263 885 aa18.59■□□□□ 0.57
TRIM28-207ENST00000597136 B4GALNT3Q6L9W6 998 aa18.59■□□□□ 0.57
TRIM28-207ENST00000597136 GLTPD2A6NH11 291 aa18.58■□□□□ 0.56
TRIM28-207ENST00000597136 ECE2O60344 883 aa18.58■□□□□ 0.56
TRIM28-207ENST00000597136 CXCL9Q07325 125 aa18.58■□□□□ 0.56
TRIM28-207ENST00000597136 HDAC1Q13547 482 aaPredicted RBP18.58■□□□□ 0.56
TRIM28-207ENST00000597136 WDR90Q96KV7 1748 aa18.58■□□□□ 0.56
TRIM28-207ENST00000597136 MED23Q9ULK4 1368 aa18.58■□□□□ 0.56
TRIM28-207ENST00000597136 ZC3H4Q9UPT8 1303 aaKnown RBP18.58■□□□□ 0.56
TRIM28-207ENST00000597136 ARAP2Q8WZ64 1704 aa18.57■□□□□ 0.56
TRIM28-207ENST00000597136 RAD17O75943 681 aa18.57■□□□□ 0.56
TRIM28-207ENST00000597136 IGHDP01880 384 aa18.57■□□□□ 0.56
TRIM28-207ENST00000597136 RWDD1Q9H446 243 aaPredicted RBP18.57■□□□□ 0.56
TRIM28-207ENST00000597136 FBXO3Q9UK99 471 aa18.57■□□□□ 0.56
TRIM28-207ENST00000597136 IL15P40933 162 aaPredicted RBP18.56■□□□□ 0.56
TRIM28-207ENST00000597136 EIF6P56537 245 aaKnown RBP18.56■□□□□ 0.56
TRIM28-207ENST00000597136 UBE4AQ14139 1066 aa18.56■□□□□ 0.56
TRIM28-207ENST00000597136 DPY19L2Q6NUT2 758 aa18.56■□□□□ 0.56
TRIM28-207ENST00000597136 NMRK2Q9NPI5 230 aa18.56■□□□□ 0.56
TRIM28-207ENST00000597136 GJA3Q9Y6H8 435 aa18.56■□□□□ 0.56
TRIM28-207ENST00000597136 MYO5AQ9Y4I1 1855 aaKnown RBP18.56■□□□□ 0.56
TRIM28-207ENST00000597136 G3V3G9 751 aa18.55■□□□□ 0.56
TRIM28-207ENST00000597136 HMMRO75330 724 aa18.55■□□□□ 0.56
TRIM28-207ENST00000597136 SURF6O75683 361 aaKnown RBP18.55■□□□□ 0.56
TRIM28-207ENST00000597136 SASH1O94885 1247 aa18.55■□□□□ 0.56
TRIM28-207ENST00000597136 FGFR2P21802 821 aa18.55■□□□□ 0.56
TRIM28-207ENST00000597136 TFCP2Q12800 502 aa18.55■□□□□ 0.56
TRIM28-207ENST00000597136 DCAF8Q5TAQ9 597 aa18.55■□□□□ 0.56
TRIM28-207ENST00000597136 CEP126Q9P2H0 1117 aa18.55■□□□□ 0.56
TRIM28-207ENST00000597136 POTECB2RU33 542 aa18.55■□□□□ 0.56
TRIM28-207ENST00000597136 GYG1P46976 350 aa18.55■□□□□ 0.56
TRIM28-207ENST00000597136 G3BP1Q13283 466 aaKnown RBP eCLIP18.55■□□□□ 0.566e-9■■□□□ 13
TRIM28-207ENST00000597136 C15orf52Q6ZUT6 534 aaKnown RBP18.55■□□□□ 0.56
TRIM28-207ENST00000597136 RRAGCQ9HB90 399 aa18.55■□□□□ 0.56
TRIM28-207ENST00000597136 FAM84BQ96KN1 310 aaPredicted RBP18.54■□□□□ 0.56
TRIM28-207ENST00000597136 EXOC6BQ9Y2D4 811 aa18.54■□□□□ 0.56
TRIM28-207ENST00000597136 NOP58Q9Y2X3 529 aaKnown RBP18.54■□□□□ 0.56
TRIM28-207ENST00000597136 TIMM10P62072 90 aa18.53■□□□□ 0.56
TRIM28-207ENST00000597136 GPBP1L1Q9HC44 474 aaPredicted RBP18.53■□□□□ 0.56
TRIM28-207ENST00000597136 CD209Q9NNX6 404 aa18.53■□□□□ 0.56
TRIM28-207ENST00000597136 AKAP11Q9UKA4 1901 aa18.53■□□□□ 0.56
TRIM28-207ENST00000597136 KDM2BQ8NHM5 1336 aa18.52■□□□□ 0.56
TRIM28-207ENST00000597136 PSMD14O00487 310 aa18.52■□□□□ 0.56
TRIM28-207ENST00000597136 PUM3Q15397 648 aaKnown RBP18.52■□□□□ 0.56
TRIM28-207ENST00000597136 CIAPIN1Q6FI81 312 aa18.52■□□□□ 0.56
TRIM28-207ENST00000597136 GPC2Q8N158 579 aa18.52■□□□□ 0.56
TRIM28-207ENST00000597136 COA1Q9GZY4 146 aa18.52■□□□□ 0.56
TRIM28-207ENST00000597136 BCAMP50895 628 aa18.51■□□□□ 0.55
TRIM28-207ENST00000597136 ATP2B3Q16720 1220 aa18.51■□□□□ 0.55
TRIM28-207ENST00000597136 PODNQ7Z5L7 613 aa18.51■□□□□ 0.55
TRIM28-207ENST00000597136 MXD3Q9BW11 206 aa18.51■□□□□ 0.55
TRIM28-207ENST00000597136 ZBTB12Q9Y330 459 aaPredicted RBP18.51■□□□□ 0.55
TRIM28-207ENST00000597136 ADORA1P30542 326 aa18.51■□□□□ 0.55
TRIM28-207ENST00000597136 OS9Q13438 667 aaPredicted RBP18.51■□□□□ 0.55
TRIM28-207ENST00000597136 CENPQQ7L2Z9 268 aaPredicted RBP18.51■□□□□ 0.55
TRIM28-207ENST00000597136 FBXO33Q7Z6M2 555 aa18.51■□□□□ 0.55
TRIM28-207ENST00000597136 IQSEC3Q9UPP2 1182 aaPredicted RBP18.51■□□□□ 0.55
TRIM28-207ENST00000597136 HIBADHP31937 336 aaKnown RBP18.5■□□□□ 0.55
TRIM28-207ENST00000597136 TNIP1Q15025 636 aa18.5■□□□□ 0.55
TRIM28-207ENST00000597136 LPIN2Q92539 896 aa18.5■□□□□ 0.55
TRIM28-207ENST00000597136 DCTPP1Q9H773 170 aa18.5■□□□□ 0.55
TRIM28-207ENST00000597136 JAG2Q9Y219 1238 aa18.5■□□□□ 0.55
TRIM28-207ENST00000597136 SHTN1A0MZ66 631 aa18.49■□□□□ 0.55
TRIM28-207ENST00000597136 APBB1O00213 710 aa18.49■□□□□ 0.55
TRIM28-207ENST00000597136 IFIT1P09914 478 aaKnown RBP18.49■□□□□ 0.55
TRIM28-207ENST00000597136 SLC5A1P13866 664 aa18.49■□□□□ 0.55
TRIM28-207ENST00000597136 IL1R1P14778 569 aa18.49■□□□□ 0.55
TRIM28-207ENST00000597136 ZNF804AQ7Z570 1209 aa18.49■□□□□ 0.55
TRIM28-207ENST00000597136 A0A1B0GUL7 405 aa18.48■□□□□ 0.55
TRIM28-207ENST00000597136 USP17L3A6NCW0 530 aa18.48■□□□□ 0.55
TRIM28-207ENST00000597136 USP17L4A6NCW7 530 aa18.48■□□□□ 0.55
TRIM28-207ENST00000597136 KIF3CO14782 793 aa18.48■□□□□ 0.55
TRIM28-207ENST00000597136 VIL1P09327 827 aaKnown RBP18.48■□□□□ 0.55
TRIM28-207ENST00000597136 EPS15P42566 896 aa18.48■□□□□ 0.55
TRIM28-207ENST00000597136 GMPSP49915 693 aaPredicted RBP18.48■□□□□ 0.55
TRIM28-207ENST00000597136 SCNN1DP51172 638 aa18.48■□□□□ 0.55
TRIM28-207ENST00000597136 GTF2IP78347 998 aa18.48■□□□□ 0.55
TRIM28-207ENST00000597136 USP17L1Q7RTZ2 530 aa18.48■□□□□ 0.55
TRIM28-207ENST00000597136 SMC5Q8IY18 1101 aa18.48■□□□□ 0.55
TRIM28-207ENST00000597136 TDRD7Q8NHU6 1098 aaKnown RBP18.48■□□□□ 0.55
TRIM28-207ENST00000597136 FBXW7Q969H0 707 aa18.48■□□□□ 0.55
TRIM28-207ENST00000597136 L3MBTL3Q96JM7 780 aaPredicted RBP18.48■□□□□ 0.55
TRIM28-207ENST00000597136 NEUROD6Q96NK8 337 aa18.48■□□□□ 0.55
TRIM28-207ENST00000597136 TTLL5Q6EMB2 1281 aa18.47■□□□□ 0.55
TRIM28-207ENST00000597136 GCC1Q96CN9 775 aa18.47■□□□□ 0.55
TRIM28-207ENST00000597136 VEGFAP15692 232 aaPredicted RBP18.47■□□□□ 0.55
TRIM28-207ENST00000597136 CAVIN4Q5BKX8 364 aa18.47■□□□□ 0.55
TRIM28-207ENST00000597136 DACT2Q5SW24 774 aa18.47■□□□□ 0.55
TRIM28-207ENST00000597136 XAGE2Q96GT9 111 aa18.47■□□□□ 0.55
TRIM28-207ENST00000597136 ADAMTSL1Q8N6G6 1762 aa18.46■□□□□ 0.55
TRIM28-207ENST00000597136 PHKA1P46020 1223 aa18.46■□□□□ 0.55
TRIM28-207ENST00000597136 TNNI3KQ59H18 835 aa18.46■□□□□ 0.55
TRIM28-207ENST00000597136 VPS37DQ86XT2 251 aa18.46■□□□□ 0.55
TRIM28-207ENST00000597136 IL1RAPL2Q9NP60 686 aa18.46■□□□□ 0.55
TRIM28-207ENST00000597136 AKAP2Q9Y2D5 859 aa18.46■□□□□ 0.55
TRIM28-207ENST00000597136 FPGT-TNNI3KV9GXZ4 949 aa18.46■□□□□ 0.55
TRIM28-207ENST00000597136 ZNF609O15014 1411 aa18.46■□□□□ 0.54
TRIM28-207ENST00000597136 MYH2Q9UKX2 1941 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms