RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 OGFOD1Q8N543 542 aa16.61■□□□□ 0.25
SF3B3-202ENST00000562722 GMLQ99445 158 aa16.61■□□□□ 0.25
SF3B3-202ENST00000562722 SAGE1Q9NXZ1 904 aa16.61■□□□□ 0.25
SF3B3-202ENST00000562722 SCAF8Q9UPN6 1271 aaKnown RBP16.61■□□□□ 0.25
SF3B3-202ENST00000562722 FKBP5Q13451 457 aaPredicted RBP16.6■□□□□ 0.25
SF3B3-202ENST00000562722 TTLL12Q14166 644 aaPredicted RBP16.6■□□□□ 0.25
SF3B3-202ENST00000562722 MPHOSPH8Q99549 860 aa16.6■□□□□ 0.25
SF3B3-202ENST00000562722 MXD3Q9BW11 206 aa16.6■□□□□ 0.25
SF3B3-202ENST00000562722 MYH16Q9H6N6 1097 aa16.6■□□□□ 0.25
SF3B3-202ENST00000562722 RNF186Q9NXI6 227 aa16.6■□□□□ 0.25
SF3B3-202ENST00000562722 POLR2AP24928 1970 aaKnown RBP16.6■□□□□ 0.25
SF3B3-202ENST00000562722 SPEF2Q9C093 1822 aa16.59■□□□□ 0.25
SF3B3-202ENST00000562722 CASP8AP2Q9UKL3 1982 aa16.59■□□□□ 0.25
SF3B3-202ENST00000562722 H7C1W4 665 aa16.59■□□□□ 0.25
SF3B3-202ENST00000562722 ITGA6P23229 1130 aa16.59■□□□□ 0.25
SF3B3-202ENST00000562722 KCNJ4P48050 445 aa16.59■□□□□ 0.25
SF3B3-202ENST00000562722 FKBP1BP68106 108 aa16.59■□□□□ 0.25
SF3B3-202ENST00000562722 FLIIQ13045 1269 aa16.59■□□□□ 0.25
SF3B3-202ENST00000562722 GCKRQ14397 625 aa16.59■□□□□ 0.25
SF3B3-202ENST00000562722 COA1Q9GZY4 146 aa16.59■□□□□ 0.25
SF3B3-202ENST00000562722 LEMD3Q9Y2U8 911 aa16.59■□□□□ 0.25
SF3B3-202ENST00000562722 MYO3BQ8WXR4 1341 aa16.59■□□□□ 0.25
SF3B3-202ENST00000562722 PITPNM2Q9BZ72 1349 aa16.59■□□□□ 0.25
SF3B3-202ENST00000562722 NBPF9Q3BBW0 867 aa16.58■□□□□ 0.24
SF3B3-202ENST00000562722 DACT2Q5SW24 774 aa16.58■□□□□ 0.24
SF3B3-202ENST00000562722 PRAMEF18Q5VWM3 479 aa16.58■□□□□ 0.24
SF3B3-202ENST00000562722 RASAL3Q86YV0 1011 aa16.58■□□□□ 0.24
SF3B3-202ENST00000562722 CSRNP1Q96S65 589 aa16.58■□□□□ 0.24
SF3B3-202ENST00000562722 ANKRD2Q9GZV1 360 aa16.58■□□□□ 0.24
SF3B3-202ENST00000562722 SALL2Q9Y467 1007 aaPredicted RBP16.58■□□□□ 0.24
SF3B3-202ENST00000562722 ZNF804BA4D1E1 1349 aa16.58■□□□□ 0.24
SF3B3-202ENST00000562722 IL16Q14005 1332 aa16.58■□□□□ 0.24
SF3B3-202ENST00000562722 NF2P35240 595 aa16.57■□□□□ 0.24
SF3B3-202ENST00000562722 STRIP1Q5VSL9 837 aa16.57■□□□□ 0.24
SF3B3-202ENST00000562722 MOB2Q70IA6 237 aa16.57■□□□□ 0.24
SF3B3-202ENST00000562722 DNAAF4Q8WXU2 420 aa16.57■□□□□ 0.24
SF3B3-202ENST00000562722 MRS2Q9HD23 443 aa16.57■□□□□ 0.24
SF3B3-202ENST00000562722 MYH3P11055 1940 aa16.57■□□□□ 0.24
SF3B3-202ENST00000562722 PSME4Q14997 1843 aa16.56■□□□□ 0.24
SF3B3-202ENST00000562722 PAPPA2Q9BXP8 1791 aa16.56■□□□□ 0.24
SF3B3-202ENST00000562722 FANCIQ9NVI1 1328 aa16.56■□□□□ 0.24
SF3B3-202ENST00000562722 UBE2Q2LH0YL09 131 aa16.56■□□□□ 0.24
SF3B3-202ENST00000562722 SASH1O94885 1247 aa16.56■□□□□ 0.24
SF3B3-202ENST00000562722 KLRK1P26718 216 aa16.56■□□□□ 0.24
SF3B3-202ENST00000562722 TXNRD3Q86VQ6 643 aa16.56■□□□□ 0.24
SF3B3-202ENST00000562722 REM2Q8IYK8 340 aaPredicted RBP16.56■□□□□ 0.24
SF3B3-202ENST00000562722 PLA2G12BQ9BX93 195 aa16.56■□□□□ 0.24
SF3B3-202ENST00000562722 CHMP3Q9Y3E7 222 aa16.56■□□□□ 0.24
SF3B3-202ENST00000562722 ANKRD18BA2A2Z9 1011 aa16.55■□□□□ 0.24
SF3B3-202ENST00000562722 WNT10BO00744 389 aa16.55■□□□□ 0.24
SF3B3-202ENST00000562722 TTLL5Q6EMB2 1281 aa16.55■□□□□ 0.24
SF3B3-202ENST00000562722 KIAA0825Q8IV33 1275 aa16.55■□□□□ 0.24
SF3B3-202ENST00000562722 LINS1Q8NG48 757 aa16.55■□□□□ 0.24
SF3B3-202ENST00000562722 HDAC9Q9UKV0 1011 aa16.55■□□□□ 0.24
SF3B3-202ENST00000562722 RGS19P49795 217 aa16.54■□□□□ 0.24
SF3B3-202ENST00000562722 GTF2IP78347 998 aa16.54■□□□□ 0.24
SF3B3-202ENST00000562722 CHRNDQ07001 517 aa16.54■□□□□ 0.24
SF3B3-202ENST00000562722 CSF1RP07333 972 aa16.53■□□□□ 0.24
SF3B3-202ENST00000562722 CASP7P55210 303 aa16.53■□□□□ 0.24
SF3B3-202ENST00000562722 IFIT5Q13325 482 aaKnown RBP16.53■□□□□ 0.24
SF3B3-202ENST00000562722 PRKG1Q13976 671 aa16.53■□□□□ 0.24
SF3B3-202ENST00000562722 MMP14P50281 582 aa16.52■□□□□ 0.24
SF3B3-202ENST00000562722 EXOSC9Q06265 439 aaKnown RBP16.52■□□□□ 0.24
SF3B3-202ENST00000562722 MKRN3Q13064 507 aaKnown RBP16.52■□□□□ 0.24
SF3B3-202ENST00000562722 APOBEC3FQ8IUX4 373 aaKnown RBP16.52■□□□□ 0.24
SF3B3-202ENST00000562722 AKAP11Q9UKA4 1901 aa16.51■□□□□ 0.23
SF3B3-202ENST00000562722 F6X3S4 739 aa16.51■□□□□ 0.23
SF3B3-202ENST00000562722 ANP32CO43423 234 aa16.51■□□□□ 0.23
SF3B3-202ENST00000562722 VAMP4O75379 141 aa16.51■□□□□ 0.23
SF3B3-202ENST00000562722 TAF5LO75529 589 aa16.51■□□□□ 0.23
SF3B3-202ENST00000562722 TAF7LQ5H9L4 462 aa16.51■□□□□ 0.23
SF3B3-202ENST00000562722 ARMC9Q7Z3E5 817 aa16.51■□□□□ 0.23
SF3B3-202ENST00000562722 CTU1Q7Z7A3 348 aaKnown RBP16.51■□□□□ 0.23
SF3B3-202ENST00000562722 WDR63Q8IWG1 891 aa16.51■□□□□ 0.23
SF3B3-202ENST00000562722 HELBQ8NG08 1087 aaPredicted RBP16.51■□□□□ 0.23
SF3B3-202ENST00000562722 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.51■□□□□ 0.23
SF3B3-202ENST00000562722 TBC1D8O95759 1140 aa16.5■□□□□ 0.23
SF3B3-202ENST00000562722 SOX10P56693 466 aa16.5■□□□□ 0.23
SF3B3-202ENST00000562722 DLGAP5Q15398 846 aa16.5■□□□□ 0.23
SF3B3-202ENST00000562722 NCBP3Q53F19 620 aaKnown RBP16.5■□□□□ 0.23
SF3B3-202ENST00000562722 ZNF804AQ7Z570 1209 aa16.5■□□□□ 0.23
SF3B3-202ENST00000562722 CD209Q9NNX6 404 aa16.5■□□□□ 0.23
SF3B3-202ENST00000562722 F8W031 263 aaPredicted RBP16.49■□□□□ 0.23
SF3B3-202ENST00000562722 SNAP23O00161 211 aa16.49■□□□□ 0.23
SF3B3-202ENST00000562722 PLIN1O60240 522 aa16.48■□□□□ 0.23
SF3B3-202ENST00000562722 FOXO4P98177 505 aa16.48■□□□□ 0.23
SF3B3-202ENST00000562722 SREBF2Q12772 1141 aa16.48■□□□□ 0.23
SF3B3-202ENST00000562722 CCDC57Q2TAC2 916 aa16.48■□□□□ 0.23
SF3B3-202ENST00000562722 BEND3Q5T5X7 828 aa16.48■□□□□ 0.23
SF3B3-202ENST00000562722 LMBR1LQ6UX01 489 aa16.48■□□□□ 0.23
SF3B3-202ENST00000562722 ANGEL1Q9UNK9 670 aaKnown RBP16.48■□□□□ 0.23
SF3B3-202ENST00000562722 PTPN12Q05209 780 aaKnown RBP16.47■□□□□ 0.23
SF3B3-202ENST00000562722 CNNM1Q9NRU3 951 aa16.47■□□□□ 0.23
SF3B3-202ENST00000562722 C9orf78Q9NZ63 289 aaPredicted RBP16.47■□□□□ 0.23
SF3B3-202ENST00000562722 JAG2Q9Y219 1238 aa16.47■□□□□ 0.23
SF3B3-202ENST00000562722 ZNF646O15015 1829 aaPredicted RBP16.47■□□□□ 0.23
SF3B3-202ENST00000562722 GRM8O00222 908 aa16.46■□□□□ 0.23
SF3B3-202ENST00000562722 MYO1BO43795 1136 aa16.46■□□□□ 0.23
SF3B3-202ENST00000562722 RBM5P52756 815 aaKnown RBP eCLIP16.46■□□□□ 0.23
SF3B3-202ENST00000562722 SLC4A10Q6U841 1118 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms