RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	TTC39B	Q5VTQ0	682 aa	Predicted RBP	4.59	□□□□□ -1.67
SPG11-223	ENST00000560858	UBASH3B	Q8TF42	649 aa		4.59	□□□□□ -1.67
SPG11-223	ENST00000560858	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	4.59	□□□□□ -1.67
SPG11-223	ENST00000560858	WNT8B	Q93098	351 aa		4.59	□□□□□ -1.67
SPG11-223	ENST00000560858	KLHDC7B	Q96G42	594 aa		4.59	□□□□□ -1.67
SPG11-223	ENST00000560858	BSDC1	Q9NW68	430 aa	Predicted RBP	4.59	□□□□□ -1.67
SPG11-223	ENST00000560858	TFIP11	Q9UBB9	837 aa	Known RBP	4.59	□□□□□ -1.67
SPG11-223	ENST00000560858	UBAP1L	F5GYI3	381 aa		4.58	□□□□□ -1.68
SPG11-223	ENST00000560858	BIN1	O00499	593 aa		4.58	□□□□□ -1.68
SPG11-223	ENST00000560858	TM4SF5	O14894	197 aa		4.58	□□□□□ -1.68
SPG11-223	ENST00000560858	CYP26A1	O43174	497 aa		4.58	□□□□□ -1.68
SPG11-223	ENST00000560858	F13B	P05160	661 aa		4.58	□□□□□ -1.68
SPG11-223	ENST00000560858	WEE1	P30291	646 aa		4.58	□□□□□ -1.68
SPG11-223	ENST00000560858	PIP4K2B	P78356	416 aa		4.58	□□□□□ -1.68
SPG11-223	ENST00000560858	ATP11A	P98196	1134 aa		4.58	□□□□□ -1.68
SPG11-223	ENST00000560858	PTK7	Q13308	1070 aa		4.58	□□□□□ -1.68
SPG11-223	ENST00000560858	PKN1	Q16512	942 aa		4.58	□□□□□ -1.68
SPG11-223	ENST00000560858	PIK3R5	Q8WYR1	880 aa		4.58	□□□□□ -1.68
SPG11-223	ENST00000560858	RUSC1	Q9BVN2	902 aa		4.58	□□□□□ -1.68
SPG11-223	ENST00000560858	OSGEP	Q9NPF4	335 aa		4.58	□□□□□ -1.68
SPG11-223	ENST00000560858	SH2B1	Q9NRF2	756 aa	Predicted RBP	4.58	□□□□□ -1.68
SPG11-223	ENST00000560858	FAM13B	Q9NYF5	915 aa		4.58	□□□□□ -1.68
SPG11-223	ENST00000560858	LRFN2	Q9ULH4	789 aa		4.58	□□□□□ -1.68
SPG11-223	ENST00000560858	FNDC3A	Q9Y2H6	1198 aa	Known RBP	4.58	□□□□□ -1.68
SPG11-223	ENST00000560858	MEGF11	A6BM72	1044 aa		4.57	□□□□□ -1.68
SPG11-223	ENST00000560858	ADAM11	O75078	769 aa		4.57	□□□□□ -1.68
SPG11-223	ENST00000560858	EPHA1	P21709	976 aa		4.57	□□□□□ -1.68
SPG11-223	ENST00000560858	ARL4D	P49703	201 aa		4.57	□□□□□ -1.68
SPG11-223	ENST00000560858	CRTC2	Q53ET0	693 aa	Predicted RBP	4.57	□□□□□ -1.68
SPG11-223	ENST00000560858	NUTM2G	Q5VZR2	741 aa		4.57	□□□□□ -1.68
SPG11-223	ENST00000560858	PAOX	Q6QHF9	649 aa		4.57	□□□□□ -1.68
SPG11-223	ENST00000560858	ANKMY2	Q8IV38	441 aa		4.57	□□□□□ -1.68
SPG11-223	ENST00000560858	C12orf50	Q8NA57	414 aa	Predicted RBP	4.57	□□□□□ -1.68
SPG11-223	ENST00000560858	POM121	Q96HA1	1249 aa		4.57	□□□□□ -1.68
SPG11-223	ENST00000560858	PBX4	Q9BYU1	374 aa		4.57	□□□□□ -1.68
SPG11-223	ENST00000560858	RASSF4	Q9H2L5	321 aa		4.57	□□□□□ -1.68
SPG11-223	ENST00000560858	FAM95C	A0A1B0GW59	222 aa		4.56	□□□□□ -1.68
SPG11-223	ENST00000560858	BRD2	P25440	801 aa	Known RBP	4.56	□□□□□ -1.68
SPG11-223	ENST00000560858	NFKBIB	Q15653	356 aa		4.56	□□□□□ -1.68
SPG11-223	ENST00000560858	ZNF648	Q5T619	568 aa	Predicted RBP	4.56	□□□□□ -1.68
SPG11-223	ENST00000560858	NCAPG2	Q86XI2	1143 aa		4.56	□□□□□ -1.68
SPG11-223	ENST00000560858	FLCN	Q8NFG4	579 aa		4.56	□□□□□ -1.68
SPG11-223	ENST00000560858	ADAM19	Q9H013	955 aa		4.56	□□□□□ -1.68
SPG11-223	ENST00000560858	MAFB	Q9Y5Q3	323 aa	Predicted RBP	4.56	□□□□□ -1.68
SPG11-223	ENST00000560858	FAM196B	A6NMK8	535 aa		4.55	□□□□□ -1.68
SPG11-223	ENST00000560858		H3BRJ5	948 aa		4.55	□□□□□ -1.68
SPG11-223	ENST00000560858	FARP2	O94887	1054 aa	Predicted RBP	4.55	□□□□□ -1.68
SPG11-223	ENST00000560858	USP11	P51784	963 aa		4.55	□□□□□ -1.68
SPG11-223	ENST00000560858	NLRP12	P59046	1061 aa		4.55	□□□□□ -1.68
SPG11-223	ENST00000560858	SGO2	Q562F6	1265 aa		4.55	□□□□□ -1.68
SPG11-223	ENST00000560858	COX20	Q5RI15	118 aa		4.55	□□□□□ -1.68
SPG11-223	ENST00000560858	LCE4A	Q5TA78	99 aa		4.55	□□□□□ -1.68
SPG11-223	ENST00000560858	COL13A1	Q5TAT6	717 aa	Predicted RBP	4.55	□□□□□ -1.68
SPG11-223	ENST00000560858	POP1	Q99575	1024 aa	Known RBP	4.55	□□□□□ -1.68
SPG11-223	ENST00000560858	KRTAP4-11	Q9BYQ6	195 aa		4.55	□□□□□ -1.68
SPG11-223	ENST00000560858	CYP4F12	Q9HCS2	524 aa		4.55	□□□□□ -1.68
SPG11-223	ENST00000560858		A6NJR5	290 aa		4.54	□□□□□ -1.68
SPG11-223	ENST00000560858	KIF4A	O95239	1232 aa		4.54	□□□□□ -1.68
SPG11-223	ENST00000560858	UBTF	P17480	764 aa	Known RBP	4.54	□□□□□ -1.68
SPG11-223	ENST00000560858	TRIP4	Q15650	581 aa	Predicted RBP	4.54	□□□□□ -1.68
SPG11-223	ENST00000560858	ZNF124	Q15973	351 aa		4.54	□□□□□ -1.68
SPG11-223	ENST00000560858	DUSP27	Q5VZP5	1158 aa		4.54	□□□□□ -1.68
SPG11-223	ENST00000560858	SLC7A3	Q8WY07	619 aa		4.54	□□□□□ -1.68
SPG11-223	ENST00000560858	COL26A1	Q96A83	441 aa		4.54	□□□□□ -1.68
SPG11-223	ENST00000560858	VRTN	Q9H8Y1	702 aa		4.54	□□□□□ -1.68
SPG11-223	ENST00000560858	ABI2	Q9NYB9	513 aa	Predicted RBP	4.54	□□□□□ -1.68
SPG11-223	ENST00000560858	USP17L15	C9J2P7	530 aa		4.53	□□□□□ -1.68
SPG11-223	ENST00000560858	USP17L10	C9JJH3	530 aa		4.53	□□□□□ -1.68
SPG11-223	ENST00000560858	USP17L13	C9JLJ4	530 aa		4.53	□□□□□ -1.68
SPG11-223	ENST00000560858	USP17L12	C9JPN9	530 aa		4.53	□□□□□ -1.68
SPG11-223	ENST00000560858	USP17L11	C9JVI0	530 aa		4.53	□□□□□ -1.68
SPG11-223	ENST00000560858	USP17L21	D6R901	530 aa		4.53	□□□□□ -1.68
SPG11-223	ENST00000560858	USP17L18	D6R9N7	530 aa		4.53	□□□□□ -1.68
SPG11-223	ENST00000560858	USP17L22	D6RA61	530 aa		4.53	□□□□□ -1.68
SPG11-223	ENST00000560858	USP17L17	D6RBQ6	530 aa		4.53	□□□□□ -1.68
SPG11-223	ENST00000560858	USP17L19	D6RCP7	530 aa		4.53	□□□□□ -1.68
SPG11-223	ENST00000560858	USP17L20	D6RJB6	530 aa		4.53	□□□□□ -1.68
SPG11-223	ENST00000560858	USP17L24	Q0WX57	530 aa		4.53	□□□□□ -1.68
SPG11-223	ENST00000560858	COL19A1	Q14993	1142 aa		4.53	□□□□□ -1.68
SPG11-223	ENST00000560858	KANK4	Q5T7N3	995 aa	Predicted RBP	4.53	□□□□□ -1.68
SPG11-223	ENST00000560858	SPOCD1	Q6ZMY3	1216 aa		4.53	□□□□□ -1.68
SPG11-223	ENST00000560858	NFXL1	Q6ZNB6	911 aa		4.53	□□□□□ -1.68
SPG11-223	ENST00000560858	KSR1	Q8IVT5	923 aa		4.53	□□□□□ -1.68
SPG11-223	ENST00000560858	ETFBKMT	Q8IXQ9	262 aa		4.53	□□□□□ -1.68
SPG11-223	ENST00000560858	CEP120	Q8N960	986 aa		4.53	□□□□□ -1.68
SPG11-223	ENST00000560858	TBC1D32	Q96NH3	1257 aa		4.53	□□□□□ -1.68
SPG11-223	ENST00000560858	SLC38A3	Q99624	504 aa		4.53	□□□□□ -1.68
SPG11-223	ENST00000560858	YIPF2	Q9BWQ6	316 aa		4.53	□□□□□ -1.68
SPG11-223	ENST00000560858	PAK6	Q9NQU5	681 aa	Predicted RBP	4.53	□□□□□ -1.68
SPG11-223	ENST00000560858	CYP27A1	Q02318	531 aa		4.52	□□□□□ -1.69
SPG11-223	ENST00000560858	C19orf57	Q0VDD7	668 aa		4.52	□□□□□ -1.69
SPG11-223	ENST00000560858	KRTAP19-4	Q3LI73	84 aa		4.52	□□□□□ -1.69
SPG11-223	ENST00000560858	ADAMTSL4	Q6UY14	1074 aa		4.52	□□□□□ -1.69
SPG11-223	ENST00000560858	SMG8	Q8ND04	991 aa	Known RBP	4.52	□□□□□ -1.69
SPG11-223	ENST00000560858	FAM200A	Q8TCP9	573 aa		4.52	□□□□□ -1.69
SPG11-223	ENST00000560858	ZMYND15	Q9H091	742 aa		4.52	□□□□□ -1.69
SPG11-223	ENST00000560858	SUGCT	Q9HAC7	445 aa		4.52	□□□□□ -1.69
SPG11-223	ENST00000560858	PAPLN	O95428	1278 aa		4.51	□□□□□ -1.69
SPG11-223	ENST00000560858	FLII	Q13045	1269 aa		4.51	□□□□□ -1.69
SPG11-223	ENST00000560858	PLCL1	Q15111	1095 aa		4.51	□□□□□ -1.69

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