RNA–Protein interactions for RNA: ENST00000548825.6

PRPF40B-209, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS P2 TSL 5 BASIC

Gene PRPF40B, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-209ENST00000548825 FAM200AQ8TCP9 573 aa16.04■□□□□ 0.16
PRPF40B-209ENST00000548825 AIFM3Q96NN9 605 aa16.04■□□□□ 0.16
PRPF40B-209ENST00000548825 MRVI1Q9Y6F6 885 aa16.04■□□□□ 0.16
PRPF40B-209ENST00000548825 RNF113AO15541 343 aaKnown RBP16.04■□□□□ 0.16
PRPF40B-209ENST00000548825 HLFQ16534 295 aa16.04■□□□□ 0.16
PRPF40B-209ENST00000548825 SLC4A8Q2Y0W8 1093 aa16.04■□□□□ 0.16
PRPF40B-209ENST00000548825 SLC9C2Q5TAH2 1124 aa16.04■□□□□ 0.16
PRPF40B-209ENST00000548825 PUS7LQ9H0K6 701 aaKnown RBP16.04■□□□□ 0.16
PRPF40B-209ENST00000548825 TRMT1Q9NXH9 659 aaKnown RBP16.04■□□□□ 0.16
PRPF40B-209ENST00000548825 ADAMTS2O95450 1211 aa16.04■□□□□ 0.16
PRPF40B-209ENST00000548825 GOLGA6L6A8MZA4 724 aa16.03■□□□□ 0.16
PRPF40B-209ENST00000548825 ZNF500O60304 480 aaPredicted RBP16.03■□□□□ 0.16
PRPF40B-209ENST00000548825 ZKSCAN3Q9BRR0 538 aa16.03■□□□□ 0.16
PRPF40B-209ENST00000548825 BTG4Q9NY30 223 aa16.03■□□□□ 0.16
PRPF40B-209ENST00000548825 TRDNQ13061 729 aa16.03■□□□□ 0.16
PRPF40B-209ENST00000548825 CHAF1AQ13111 956 aaPredicted RBP16.03■□□□□ 0.16
PRPF40B-209ENST00000548825 ARID5BQ14865 1188 aa16.03■□□□□ 0.16
PRPF40B-209ENST00000548825 ORC3Q9UBD5 711 aaPredicted RBP16.03■□□□□ 0.16
PRPF40B-209ENST00000548825 PRC1O43663 620 aa16.02■□□□□ 0.16
PRPF40B-209ENST00000548825 IMMTQ16891 758 aaKnown RBP16.02■□□□□ 0.16
PRPF40B-209ENST00000548825 GREM2Q9H772 168 aa16.02■□□□□ 0.16
PRPF40B-209ENST00000548825 RRP9O43818 475 aaKnown RBP16.02■□□□□ 0.16
PRPF40B-209ENST00000548825 KCNQ4P56696 695 aa16.02■□□□□ 0.16
PRPF40B-209ENST00000548825 ATP2B3Q16720 1220 aa16.02■□□□□ 0.16
PRPF40B-209ENST00000548825 HS1BP3Q53T59 392 aa16.02■□□□□ 0.16
PRPF40B-209ENST00000548825 CFAP45Q9UL16 551 aa16.02■□□□□ 0.16
PRPF40B-209ENST00000548825 MED23Q9ULK4 1368 aa16.02■□□□□ 0.15
PRPF40B-209ENST00000548825 FGAP02671 866 aa16.02■□□□□ 0.15
PRPF40B-209ENST00000548825 BICDL1Q6ZP65 573 aa16.02■□□□□ 0.15
PRPF40B-209ENST00000548825 BRINP3Q76B58 766 aa16.02■□□□□ 0.15
PRPF40B-209ENST00000548825 CMTR1Q8N1G2 835 aaKnown RBP16.02■□□□□ 0.15
PRPF40B-209ENST00000548825 TMEM87AQ8NBN3 555 aa16.02■□□□□ 0.15
PRPF40B-209ENST00000548825 PIBF1Q8WXW3 757 aa16.02■□□□□ 0.15
PRPF40B-209ENST00000548825 PHKBQ93100 1093 aa16.02■□□□□ 0.15
PRPF40B-209ENST00000548825 C8orf76Q96K31 380 aa16.02■□□□□ 0.15
PRPF40B-209ENST00000548825 CLIP2Q9UDT6 1046 aa16.02■□□□□ 0.15
PRPF40B-209ENST00000548825 UTYO14607 1347 aa16.01■□□□□ 0.15
PRPF40B-209ENST00000548825 H7C1W4 665 aa16.01■□□□□ 0.15
PRPF40B-209ENST00000548825 ZNF213O14771 459 aa16.01■□□□□ 0.15
PRPF40B-209ENST00000548825 EPB41L2O43491 1005 aaKnown RBP16.01■□□□□ 0.15
PRPF40B-209ENST00000548825 ITGA6P23229 1130 aa16.01■□□□□ 0.15
PRPF40B-209ENST00000548825 NSUN7Q8NE18 718 aaKnown RBP16.01■□□□□ 0.15
PRPF40B-209ENST00000548825 SYNE3Q6ZMZ3 975 aa16.01■□□□□ 0.15
PRPF40B-209ENST00000548825 PCDH11XQ9BZA7 1347 aa16.01■□□□□ 0.15
PRPF40B-209ENST00000548825 PCDH11YQ9BZA8 1340 aa16.01■□□□□ 0.15
PRPF40B-209ENST00000548825 SMIM5Q71RC9 77 aa16.01■□□□□ 0.15
PRPF40B-209ENST00000548825 LRP10Q7Z4F1 713 aa16.01■□□□□ 0.15
PRPF40B-209ENST00000548825 SPECC1Q5M775 1068 aa16■□□□□ 0.15
PRPF40B-209ENST00000548825 C11orf57Q6ZUT1 292 aaPredicted RBP16■□□□□ 0.15
PRPF40B-209ENST00000548825 HEG1Q9ULI3 1381 aa16■□□□□ 0.15
PRPF40B-209ENST00000548825 GPAA1O43292 621 aa16■□□□□ 0.15
PRPF40B-209ENST00000548825 PDIA3P30101 505 aaKnown RBP16■□□□□ 0.15
PRPF40B-209ENST00000548825 ADD1P35611 737 aaKnown RBP16■□□□□ 0.15
PRPF40B-209ENST00000548825 UVSSAQ2YD98 709 aa16■□□□□ 0.15
PRPF40B-209ENST00000548825 ABCF2Q9UG63 623 aa16■□□□□ 0.15
PRPF40B-209ENST00000548825 MTMR7Q9Y216 660 aa16■□□□□ 0.15
PRPF40B-209ENST00000548825 KIF3AQ9Y496 699 aa16■□□□□ 0.15
PRPF40B-209ENST00000548825 NUTM2BA6NNL0 878 aaPredicted RBP15.99■□□□□ 0.15
PRPF40B-209ENST00000548825 NUTM2EB1AL46 878 aaPredicted RBP15.99■□□□□ 0.15
PRPF40B-209ENST00000548825 B4E1Z4 1266 aa15.99■□□□□ 0.15
PRPF40B-209ENST00000548825 SMC2O95347 1197 aa15.99■□□□□ 0.15
PRPF40B-209ENST00000548825 NUTM2AQ8IVF1 878 aaPredicted RBP15.99■□□□□ 0.15
PRPF40B-209ENST00000548825 MIGA1Q8NAN2 632 aa15.99■□□□□ 0.15
PRPF40B-209ENST00000548825 CCDC191Q8NCU4 936 aa15.99■□□□□ 0.15
PRPF40B-209ENST00000548825 UBE2Q2LH0YL09 131 aa15.99■□□□□ 0.15
PRPF40B-209ENST00000548825 CTDNEP1O95476 244 aa15.99■□□□□ 0.15
PRPF40B-209ENST00000548825 RESTQ13127 1097 aa15.99■□□□□ 0.15
PRPF40B-209ENST00000548825 TPD52L1Q16890 204 aaPredicted RBP15.99■□□□□ 0.15
PRPF40B-209ENST00000548825 RABL6Q3YEC7 729 aaPredicted RBP15.99■□□□□ 0.15
PRPF40B-209ENST00000548825 CCDC24Q8N4L8 307 aa15.99■□□□□ 0.15
PRPF40B-209ENST00000548825 PIGBQ92521 554 aa15.99■□□□□ 0.15
PRPF40B-209ENST00000548825 DDX19AQ9NUU7 478 aaKnown RBP15.99■□□□□ 0.15
PRPF40B-209ENST00000548825 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.99■□□□□ 0.15
PRPF40B-209ENST00000548825 V9GYY5 206 aaPredicted RBP15.99■□□□□ 0.15
PRPF40B-209ENST00000548825 NUP133Q8WUM0 1156 aa15.99■□□□□ 0.15
PRPF40B-209ENST00000548825 GOLPH3LQ9H4A5 285 aa15.99■□□□□ 0.15
PRPF40B-209ENST00000548825 SLAIN2Q9P270 581 aa15.99■□□□□ 0.15
PRPF40B-209ENST00000548825 SPATA31A3Q5VYP0 1347 aa15.98■□□□□ 0.15
PRPF40B-209ENST00000548825 IRS4O14654 1257 aaPredicted RBP15.98■□□□□ 0.15
PRPF40B-209ENST00000548825 STARD3NLO95772 234 aa15.98■□□□□ 0.15
PRPF40B-209ENST00000548825 AOPEPQ8N6M6 819 aa15.98■□□□□ 0.15
PRPF40B-209ENST00000548825 KCNF1Q9H3M0 494 aa15.98■□□□□ 0.15
PRPF40B-209ENST00000548825 NCAPD2Q15021 1401 aa15.98■□□□□ 0.15
PRPF40B-209ENST00000548825 TCIRG1Q13488 830 aa15.98■□□□□ 0.15
PRPF40B-209ENST00000548825 ZMYM1Q5SVZ6 1142 aa15.98■□□□□ 0.15
PRPF40B-209ENST00000548825 JAG2Q9Y219 1238 aa15.98■□□□□ 0.15
PRPF40B-209ENST00000548825 ZBTB1Q9Y2K1 713 aa15.98■□□□□ 0.15
PRPF40B-209ENST00000548825 CLIC4Q9Y696 253 aa15.98■□□□□ 0.15
PRPF40B-209ENST00000548825 ZNF335Q9H4Z2 1342 aaPredicted RBP15.98■□□□□ 0.15
PRPF40B-209ENST00000548825 CASP7P55210 303 aa15.97■□□□□ 0.15
PRPF40B-209ENST00000548825 CLSTN2Q9H4D0 955 aa15.97■□□□□ 0.15
PRPF40B-209ENST00000548825 SPDYE4A6NLX3 237 aa15.97■□□□□ 0.15
PRPF40B-209ENST00000548825 PHKA1P46020 1223 aa15.97■□□□□ 0.15
PRPF40B-209ENST00000548825 CREBRFQ8IUR6 639 aa15.97■□□□□ 0.15
PRPF40B-209ENST00000548825 AIDAQ96BJ3 306 aa15.97■□□□□ 0.15
PRPF40B-209ENST00000548825 hCG_1642624A0A1W2PR95 340 aa15.96■□□□□ 0.15
PRPF40B-209ENST00000548825 CTDSPL2Q05D32 466 aa15.96■□□□□ 0.15
PRPF40B-209ENST00000548825 MPHOSPH8Q99549 860 aa15.96■□□□□ 0.15
PRPF40B-209ENST00000548825 SENP2Q9HC62 589 aa15.96■□□□□ 0.15
PRPF40B-209ENST00000548825 HMGB1P09429 215 aaKnown RBP15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms