RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 UQCRHLA0A096LP55 91 aa6.64□□□□□ -1.35
LIMA1-203ENST00000547825 NPHP1O15259 732 aa6.64□□□□□ -1.35
LIMA1-203ENST00000547825 DKK1O94907 266 aa6.64□□□□□ -1.35
LIMA1-203ENST00000547825 ABL1P00519 1130 aa6.64□□□□□ -1.35
LIMA1-203ENST00000547825 UQCRHP07919 91 aa6.64□□□□□ -1.35
LIMA1-203ENST00000547825 TRAF7Q6Q0C0 670 aa6.64□□□□□ -1.35
LIMA1-203ENST00000547825 CHMP4BQ9H444 224 aaKnown RBP6.64□□□□□ -1.35
LIMA1-203ENST00000547825 MARSP56192 900 aaKnown RBP6.64□□□□□ -1.35
LIMA1-203ENST00000547825 CRB1P82279 1406 aa6.64□□□□□ -1.35
LIMA1-203ENST00000547825 ANKRD33BA6NCL7 494 aa6.63□□□□□ -1.35
LIMA1-203ENST00000547825 TPM2P07951 284 aa6.63□□□□□ -1.35
LIMA1-203ENST00000547825 ERBB3P21860 1342 aa6.63□□□□□ -1.35
LIMA1-203ENST00000547825 BRCA1P38398 1863 aaKnown RBP6.63□□□□□ -1.35
LIMA1-203ENST00000547825 BCAMP50895 628 aa6.63□□□□□ -1.35
LIMA1-203ENST00000547825 Q3C1V9 767 aa6.63□□□□□ -1.35
LIMA1-203ENST00000547825 CCDC85AQ96PX6 553 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-203ENST00000547825 LAMB4A4D0S4 1761 aa6.63□□□□□ -1.35
LIMA1-203ENST00000547825 CD2BP2O95400 341 aaKnown RBP6.63□□□□□ -1.35
LIMA1-203ENST00000547825 TNS2Q63HR2 1409 aa6.63□□□□□ -1.35
LIMA1-203ENST00000547825 KIAA0232Q92628 1395 aa6.63□□□□□ -1.35
LIMA1-203ENST00000547825 PURBQ96QR8 312 aaKnown RBP6.63□□□□□ -1.35
LIMA1-203ENST00000547825 MKNK1Q9BUB5 465 aa6.63□□□□□ -1.35
LIMA1-203ENST00000547825 CDCA7Q9BWT1 371 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-203ENST00000547825 BCORQ6W2J9 1755 aa6.62□□□□□ -1.35
LIMA1-203ENST00000547825 SPATA31A1Q5TZJ5 1347 aa6.62□□□□□ -1.35
LIMA1-203ENST00000547825 MTHFSP49914 203 aa6.62□□□□□ -1.35
LIMA1-203ENST00000547825 RARSP54136 660 aaKnown RBP6.62□□□□□ -1.35
LIMA1-203ENST00000547825 PSME1Q06323 249 aa6.62□□□□□ -1.35
LIMA1-203ENST00000547825 ARHGEF25Q86VW2 580 aa6.62□□□□□ -1.35
LIMA1-203ENST00000547825 CABP1Q9NZU7 370 aa6.62□□□□□ -1.35
LIMA1-203ENST00000547825 DDX19BQ9UMR2 479 aa6.62□□□□□ -1.35
LIMA1-203ENST00000547825 NRXN2Q9P2S2 1712 aa6.62□□□□□ -1.35
LIMA1-203ENST00000547825 RIPK4P57078 832 aa6.62□□□□□ -1.35
LIMA1-203ENST00000547825 CBX1P83916 185 aa6.62□□□□□ -1.35
LIMA1-203ENST00000547825 EXOSC9Q06265 439 aaKnown RBP6.62□□□□□ -1.35
LIMA1-203ENST00000547825 OCLNQ16625 522 aa6.62□□□□□ -1.35
LIMA1-203ENST00000547825 ZNF772Q68DY9 489 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-203ENST00000547825 FAM160A2Q8N612 972 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-203ENST00000547825 SEPT3Q9UH03 358 aa6.62□□□□□ -1.35
LIMA1-203ENST00000547825 SFI1A8K8P3 1242 aa6.62□□□□□ -1.35
LIMA1-203ENST00000547825 ZBTB7BO15156 539 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-203ENST00000547825 DDIT3P35638 169 aa6.62□□□□□ -1.35
LIMA1-203ENST00000547825 PTPRNQ16849 979 aa6.62□□□□□ -1.35
LIMA1-203ENST00000547825 NPAS4Q8IUM7 802 aa6.62□□□□□ -1.35
LIMA1-203ENST00000547825 UNC5CLQ8IV45 518 aa6.62□□□□□ -1.35
LIMA1-203ENST00000547825 SPC24Q8NBT2 197 aa6.62□□□□□ -1.35
LIMA1-203ENST00000547825 LRCH3Q96II8 777 aa6.62□□□□□ -1.35
LIMA1-203ENST00000547825 TBC1D32Q96NH3 1257 aa6.62□□□□□ -1.35
LIMA1-203ENST00000547825 SLC4A5Q9BY07 1137 aa6.62□□□□□ -1.35
LIMA1-203ENST00000547825 NSD2O96028 1365 aa6.61□□□□□ -1.35
LIMA1-203ENST00000547825 JUNDP17535 347 aa6.61□□□□□ -1.35
LIMA1-203ENST00000547825 DLEC1Q9Y238 1755 aa6.61□□□□□ -1.35
LIMA1-203ENST00000547825 FSD2A1L4K1 749 aa6.61□□□□□ -1.35
LIMA1-203ENST00000547825 ATP5J2-PTCD1G3V325 749 aa6.61□□□□□ -1.35
LIMA1-203ENST00000547825 OXLD1Q5BKU9 147 aa6.61□□□□□ -1.35
LIMA1-203ENST00000547825 PTCRAQ6ISU1 281 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-203ENST00000547825 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-203ENST00000547825 H3BRB1 525 aa6.61□□□□□ -1.35
LIMA1-203ENST00000547825 CCDC173Q0VFZ6 552 aa6.61□□□□□ -1.35
LIMA1-203ENST00000547825 PDE3AQ14432 1141 aa6.61□□□□□ -1.35
LIMA1-203ENST00000547825 ZSCAN30Q86W11 494 aa6.61□□□□□ -1.35
LIMA1-203ENST00000547825 TNPO1Q92973 898 aaKnown RBP6.61□□□□□ -1.35
LIMA1-203ENST00000547825 NUDT12Q9BQG2 462 aa6.61□□□□□ -1.35
LIMA1-203ENST00000547825 TUT1Q9H6E5 874 aaKnown RBP6.61□□□□□ -1.35
LIMA1-203ENST00000547825 NEK4P51957 841 aa6.6□□□□□ -1.35
LIMA1-203ENST00000547825 GAS2L3Q86XJ1 694 aa6.6□□□□□ -1.35
LIMA1-203ENST00000547825 NBPF3Q9H094 633 aa6.6□□□□□ -1.35
LIMA1-203ENST00000547825 OVOS2A0A0G2JMS6 1433 aa6.6□□□□□ -1.35
LIMA1-203ENST00000547825 NSD3Q9BZ95 1437 aa6.6□□□□□ -1.35
LIMA1-203ENST00000547825 MEGF6O75095 1541 aa6.6□□□□□ -1.35
LIMA1-203ENST00000547825 MAGEB6P1A0A0J9YX57 407 aa6.6□□□□□ -1.35
LIMA1-203ENST00000547825 HMOX1P09601 288 aa6.6□□□□□ -1.35
LIMA1-203ENST00000547825 MRPL50Q8N5N7 158 aaKnown RBP6.6□□□□□ -1.35
LIMA1-203ENST00000547825 RUNDC1Q96C34 613 aa6.6□□□□□ -1.35
LIMA1-203ENST00000547825 KIF2CQ99661 725 aa6.6□□□□□ -1.35
LIMA1-203ENST00000547825 SLC12A5Q9H2X9 1139 aa6.6□□□□□ -1.35
LIMA1-203ENST00000547825 GGNBP2Q9H3C7 697 aa6.6□□□□□ -1.35
LIMA1-203ENST00000547825 EVA1BQ9NVM1 165 aa6.6□□□□□ -1.35
LIMA1-203ENST00000547825 SYCE3A1L190 88 aa6.6□□□□□ -1.35
LIMA1-203ENST00000547825 NUCB2P80303 420 aa6.6□□□□□ -1.35
LIMA1-203ENST00000547825 DNAAF2Q9NVR5 837 aaKnown RBP6.6□□□□□ -1.35
LIMA1-203ENST00000547825 IFT57Q9NWB7 429 aa6.6□□□□□ -1.35
LIMA1-203ENST00000547825 CCNYL3P0C7X3 344 aa6.59□□□□□ -1.35
LIMA1-203ENST00000547825 CCAR2Q8N163 923 aaKnown RBP6.59□□□□□ -1.35
LIMA1-203ENST00000547825 NOB1Q9ULX3 412 aaKnown RBP6.59□□□□□ -1.35
LIMA1-203ENST00000547825 POTEB3A0JP26 581 aa6.59□□□□□ -1.35
LIMA1-203ENST00000547825 VPS37CA5D8V6 355 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-203ENST00000547825 TLL1O43897 1013 aa6.59□□□□□ -1.35
LIMA1-203ENST00000547825 ECM1Q16610 540 aa6.59□□□□□ -1.35
LIMA1-203ENST00000547825 POTEBQ6S5H4 581 aa6.59□□□□□ -1.35
LIMA1-203ENST00000547825 TPCN2Q8NHX9 752 aa6.59□□□□□ -1.35
LIMA1-203ENST00000547825 PDCL3Q9H2J4 239 aa6.59□□□□□ -1.35
LIMA1-203ENST00000547825 PCDHB3Q9Y5E6 796 aa6.59□□□□□ -1.35
LIMA1-203ENST00000547825 FAM177BA6PVY3 158 aa6.59□□□□□ -1.35
LIMA1-203ENST00000547825 NRDCO43847 1150 aa6.59□□□□□ -1.35
LIMA1-203ENST00000547825 GIGYF1O75420 1035 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-203ENST00000547825 COPS2P61201 443 aa6.59□□□□□ -1.35
LIMA1-203ENST00000547825 EML3Q32P44 896 aa6.59□□□□□ -1.35
LIMA1-203ENST00000547825 LAPTM4BQ86VI4 370 aa6.59□□□□□ -1.35
LIMA1-203ENST00000547825 KDRP35968 1356 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms