RNA–Protein interactions for RNA: ENST00000542495.5

ATPAF1-212, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2 BASIC

Gene ATPAF1, Length 1,779 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-212ENST00000542495 MEGF6O75095 1541 aa6.18□□□□□ -1.42
ATPAF1-212ENST00000542495 FIBPO43427 364 aa6.18□□□□□ -1.42
ATPAF1-212ENST00000542495 KDM4AO75164 1064 aa6.18□□□□□ -1.42
ATPAF1-212ENST00000542495 TOB2Q14106 344 aaPredicted RBP6.18□□□□□ -1.42
ATPAF1-212ENST00000542495 RNF20Q5VTR2 975 aa6.18□□□□□ -1.42
ATPAF1-212ENST00000542495 ZNF772Q68DY9 489 aaPredicted RBP6.18□□□□□ -1.42
ATPAF1-212ENST00000542495 RIC3Q7Z5B4 369 aa6.18□□□□□ -1.42
ATPAF1-212ENST00000542495 TICAM2Q86XR7 235 aa6.18□□□□□ -1.42
ATPAF1-212ENST00000542495 NECAB1Q8N987 351 aa6.18□□□□□ -1.42
ATPAF1-212ENST00000542495 XAGE3Q8WTP9 111 aa6.18□□□□□ -1.42
ATPAF1-212ENST00000542495 REPIN1Q9BWE0 567 aaKnown RBP6.18□□□□□ -1.42
ATPAF1-212ENST00000542495 BOLA2Q9H3K6 86 aa6.18□□□□□ -1.42
ATPAF1-212ENST00000542495 COL16A1Q07092 1604 aaPredicted RBP6.18□□□□□ -1.42
ATPAF1-212ENST00000542495 LAMB4A4D0S4 1761 aa6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 ARFGEF2Q9Y6D5 1785 aa6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 ADCY5O95622 1261 aa6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 HCLS1P14317 486 aaPredicted RBP6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 PDCP20941 246 aa6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 CASP7P55210 303 aa6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 PTPN12Q05209 780 aaKnown RBP6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 KIAA2012Q0VF49 1180 aa6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 NEXNQ0ZGT2 675 aa6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 AIMP1Q12904 312 aaKnown RBP6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 PTGDRQ13258 359 aa6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 SLC39A6Q13433 755 aa6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 MCM6Q14566 821 aa6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 TNNI3KQ59H18 835 aa6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 MEX3CQ5U5Q3 659 aaKnown RBP6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 LARP1BQ659C4 914 aaKnown RBP6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 BLOC1S2Q6QNY1 142 aa6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 COPS6Q7L5N1 327 aa6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 TTC6Q86TZ1 520 aa6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 ZNF589Q86UQ0 364 aaPredicted RBP6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 DDX12PQ92771 950 aa6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 ZNF496Q96IT1 587 aaPredicted RBP6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 FSD1Q9BTV5 496 aa6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 PDCL3Q9H2J4 239 aa6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 USP25Q9UHP3 1055 aa6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 DBNLQ9UJU6 430 aaKnown RBP6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 R3HCC1Q9Y3T6 440 aaKnown RBP6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 TAF6LQ9Y6J9 622 aa6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 FPGT-TNNI3KV9GXZ4 949 aa6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 PARP4Q9UKK3 1724 aaKnown RBP6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 AHDC1Q5TGY3 1603 aaPredicted RBP6.17□□□□□ -1.42
ATPAF1-212ENST00000542495 DCCP43146 1447 aa6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 SNRPA1P09661 255 aaKnown RBP6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 TATP17735 454 aaPredicted RBP6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 KCNJ4P48050 445 aa6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 KRT85P78386 507 aa6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 KRT32Q14532 448 aa6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 GIMAP6Q6P9H5 292 aa6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 SASS6Q6UVJ0 657 aa6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 RBM43Q6ZSC3 357 aaKnown RBP6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 ANKRD13DQ6ZTN6 518 aa6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 CDC37L1Q7L3B6 337 aa6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 IFNL2Q8IZJ0 200 aa6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 NFATC2IPQ8NCF5 419 aa6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 KLHDC4Q8TBB5 520 aa6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 PIBF1Q8WXW3 757 aa6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 RAPGEF4Q8WZA2 1011 aa6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 UPF1Q92900 1129 aaKnown RBP eCLIP6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 PCMTD1Q96MG8 357 aaPredicted RBP6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 MYD88Q99836 296 aa6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 HAUS7Q99871 368 aa6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 SIL1Q9H173 461 aa6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 SPTLC3Q9NUV7 552 aa6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 AFDNP55196 1824 aaKnown RBP6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 ZNF609O15014 1411 aa6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 VPS37CA5D8V6 355 aaPredicted RBP6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 DYNC1I1O14576 645 aa6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 AP5Z1O43299 807 aa6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 PTMAP06454 111 aaKnown RBP6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 MYL6BP14649 208 aa6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 DDX54Q8TDD1 881 aaKnown RBP6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 OXER1Q8TDS5 423 aa6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 GTF3C6Q969F1 213 aa6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 DCAF5Q96JK2 942 aa6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 SCAND2PQ9GZW5 306 aaPredicted RBP6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 USP16Q9Y5T5 823 aa6.16□□□□□ -1.42
ATPAF1-212ENST00000542495 LRP6O75581 1613 aa6.15□□□□□ -1.43
ATPAF1-212ENST00000542495 UQCRHLA0A096LP55 91 aa6.15□□□□□ -1.43
ATPAF1-212ENST00000542495 CYP27B1O15528 508 aa6.15□□□□□ -1.43
ATPAF1-212ENST00000542495 TPM3P06753 285 aa6.15□□□□□ -1.43
ATPAF1-212ENST00000542495 UQCRHP07919 91 aa6.15□□□□□ -1.43
ATPAF1-212ENST00000542495 CCDC192P0DO97 292 aa6.15□□□□□ -1.43
ATPAF1-212ENST00000542495 LIG1P18858 919 aa6.15□□□□□ -1.43
ATPAF1-212ENST00000542495 ZC3H6P61129 1189 aaKnown RBP6.15□□□□□ -1.43
ATPAF1-212ENST00000542495 TFCP2Q12800 502 aa6.15□□□□□ -1.43
ATPAF1-212ENST00000542495 SH3D19Q5HYK7 790 aa6.15□□□□□ -1.43
ATPAF1-212ENST00000542495 BRINP3Q76B58 766 aa6.15□□□□□ -1.43
ATPAF1-212ENST00000542495 PLBD2Q8NHP8 589 aa6.15□□□□□ -1.43
ATPAF1-212ENST00000542495 SMARCC2Q8TAQ2 1214 aa6.15□□□□□ -1.43
ATPAF1-212ENST00000542495 EDC3Q96F86 508 aaKnown RBP6.15□□□□□ -1.43
ATPAF1-212ENST00000542495 FMNL2Q96PY5 1086 aa6.15□□□□□ -1.43
ATPAF1-212ENST00000542495 MAP7D2Q96T17 732 aa6.15□□□□□ -1.43
ATPAF1-212ENST00000542495 GPR108Q9NPR9 543 aa6.15□□□□□ -1.43
ATPAF1-212ENST00000542495 NUP188Q5SRE5 1749 aa6.15□□□□□ -1.43
ATPAF1-212ENST00000542495 PALLDQ8WX93 1383 aa6.15□□□□□ -1.43
ATPAF1-212ENST00000542495 UBR2Q8IWV8 1755 aa6.15□□□□□ -1.43
ATPAF1-212ENST00000542495 SH3TC1Q8TE82 1336 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms