RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 PUM3Q15397 648 aaKnown RBP17.94■□□□□ 0.46
CPSF1-206ENST00000531480 CEP126Q9P2H0 1117 aa17.94■□□□□ 0.46
CPSF1-206ENST00000531480 PCDHB15Q9Y5E8 787 aa17.94■□□□□ 0.46
CPSF1-206ENST00000531480 ZNF609O15014 1411 aa17.94■□□□□ 0.46
CPSF1-206ENST00000531480 RIMBP2O15034 1052 aa17.93■□□□□ 0.46
CPSF1-206ENST00000531480 KCNJ4P48050 445 aa17.93■□□□□ 0.46
CPSF1-206ENST00000531480 PODNQ7Z5L7 613 aa17.93■□□□□ 0.46
CPSF1-206ENST00000531480 LPIN2Q92539 896 aa17.93■□□□□ 0.46
CPSF1-206ENST00000531480 COA1Q9GZY4 146 aa17.93■□□□□ 0.46
CPSF1-206ENST00000531480 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.93■□□□□ 0.46
CPSF1-206ENST00000531480 ZNF541Q9H0D2 1346 aa17.93■□□□□ 0.46
CPSF1-206ENST00000531480 KIF3CO14782 793 aa17.92■□□□□ 0.46
CPSF1-206ENST00000531480 ECE2O60344 883 aa17.92■□□□□ 0.46
CPSF1-206ENST00000531480 SURF6O75683 361 aaKnown RBP17.92■□□□□ 0.46
CPSF1-206ENST00000531480 G3BP1Q13283 466 aaKnown RBP eCLIP17.92■□□□□ 0.46
CPSF1-206ENST00000531480 EXOC6Q8TAG9 804 aa17.92■□□□□ 0.46
CPSF1-206ENST00000531480 DBNDD1Q9H9R9 158 aa17.92■□□□□ 0.46
CPSF1-206ENST00000531480 GPR108Q9NPR9 543 aa17.92■□□□□ 0.46
CPSF1-206ENST00000531480 SCN4AP35499 1836 aa17.91■□□□□ 0.46
CPSF1-206ENST00000531480 IL1R1P14778 569 aa17.91■□□□□ 0.46
CPSF1-206ENST00000531480 CXCL9Q07325 125 aa17.91■□□□□ 0.46
CPSF1-206ENST00000531480 TFCP2Q12800 502 aa17.91■□□□□ 0.46
CPSF1-206ENST00000531480 FBXO33Q7Z6M2 555 aa17.91■□□□□ 0.46
CPSF1-206ENST00000531480 GPC2Q8N158 579 aa17.91■□□□□ 0.46
CPSF1-206ENST00000531480 L3MBTL3Q96JM7 780 aaPredicted RBP17.91■□□□□ 0.46
CPSF1-206ENST00000531480 FAM84BQ96KN1 310 aaPredicted RBP17.91■□□□□ 0.46
CPSF1-206ENST00000531480 NMRK2Q9NPI5 230 aa17.91■□□□□ 0.46
CPSF1-206ENST00000531480 EIF6P56537 245 aaKnown RBP17.9■□□□□ 0.46
CPSF1-206ENST00000531480 DOK7Q18PE1 504 aa17.9■□□□□ 0.46
CPSF1-206ENST00000531480 HSP90AB4PQ58FF6 505 aa17.9■□□□□ 0.46
CPSF1-206ENST00000531480 DPY19L2Q6NUT2 758 aa17.9■□□□□ 0.46
CPSF1-206ENST00000531480 CD209Q9NNX6 404 aa17.9■□□□□ 0.46
CPSF1-206ENST00000531480 AKAP2Q9Y2D5 859 aa17.9■□□□□ 0.46
CPSF1-206ENST00000531480 IFIT1P09914 478 aaKnown RBP17.89■□□□□ 0.45
CPSF1-206ENST00000531480 SLC5A1P13866 664 aa17.89■□□□□ 0.45
CPSF1-206ENST00000531480 ATP2B3Q16720 1220 aa17.89■□□□□ 0.45
CPSF1-206ENST00000531480 ZNF804AQ7Z570 1209 aa17.89■□□□□ 0.45
CPSF1-206ENST00000531480 ERC1Q8IUD2 1116 aa17.89■□□□□ 0.45
CPSF1-206ENST00000531480 DCTPP1Q9H773 170 aa17.89■□□□□ 0.45
CPSF1-206ENST00000531480 EXOC6BQ9Y2D4 811 aa17.89■□□□□ 0.45
CPSF1-206ENST00000531480 NEFLP07196 543 aa17.88■□□□□ 0.45
CPSF1-206ENST00000531480 VIL1P09327 827 aaKnown RBP17.88■□□□□ 0.45
CPSF1-206ENST00000531480 HDAC1Q13547 482 aaPredicted RBP17.88■□□□□ 0.45
CPSF1-206ENST00000531480 CIAPIN1Q6FI81 312 aa17.88■□□□□ 0.45
CPSF1-206ENST00000531480 TDRD7Q8NHU6 1098 aaKnown RBP17.88■□□□□ 0.45
CPSF1-206ENST00000531480 KCNQ5Q9NR82 932 aa17.88■□□□□ 0.45
CPSF1-206ENST00000531480 KDM2BQ8NHM5 1336 aa17.88■□□□□ 0.45
CPSF1-206ENST00000531480 MYH13Q9UKX3 1938 aa17.88■□□□□ 0.45
CPSF1-206ENST00000531480 A0A1B0GUL7 405 aa17.87■□□□□ 0.45
CPSF1-206ENST00000531480 POTECB2RU33 542 aa17.87■□□□□ 0.45
CPSF1-206ENST00000531480 RAB11FIP3O75154 756 aa17.87■□□□□ 0.45
CPSF1-206ENST00000531480 DDNO94850 711 aaPredicted RBP17.87■□□□□ 0.45
CPSF1-206ENST00000531480 HIBADHP31937 336 aaKnown RBP17.87■□□□□ 0.45
CPSF1-206ENST00000531480 GYG1P46976 350 aa17.87■□□□□ 0.45
CPSF1-206ENST00000531480 TNIP1Q15025 636 aa17.87■□□□□ 0.45
CPSF1-206ENST00000531480 PSMD14O00487 310 aa17.86■□□□□ 0.45
CPSF1-206ENST00000531480 RAD17O75943 681 aa17.86■□□□□ 0.45
CPSF1-206ENST00000531480 TIMM10P62072 90 aa17.86■□□□□ 0.45
CPSF1-206ENST00000531480 TNNI3KQ59H18 835 aa17.86■□□□□ 0.45
CPSF1-206ENST00000531480 CAVIN4Q5BKX8 364 aa17.86■□□□□ 0.45
CPSF1-206ENST00000531480 STRIP1Q5VSL9 837 aa17.86■□□□□ 0.45
CPSF1-206ENST00000531480 RHPN1Q8TCX5 695 aa17.86■□□□□ 0.45
CPSF1-206ENST00000531480 FPGT-TNNI3KV9GXZ4 949 aa17.86■□□□□ 0.45
CPSF1-206ENST00000531480 FAM205AQ6ZU69 1335 aa17.86■□□□□ 0.45
CPSF1-206ENST00000531480 USP17L3A6NCW0 530 aa17.85■□□□□ 0.45
CPSF1-206ENST00000531480 USP17L4A6NCW7 530 aa17.85■□□□□ 0.45
CPSF1-206ENST00000531480 BCAMP50895 628 aa17.85■□□□□ 0.45
CPSF1-206ENST00000531480 DACT2Q5SW24 774 aa17.85■□□□□ 0.45
CPSF1-206ENST00000531480 USP17L1Q7RTZ2 530 aa17.85■□□□□ 0.45
CPSF1-206ENST00000531480 KIF1BPQ96EK5 621 aa17.85■□□□□ 0.45
CPSF1-206ENST00000531480 GMLQ99445 158 aa17.85■□□□□ 0.45
CPSF1-206ENST00000531480 G3V3G9 751 aa17.84■□□□□ 0.45
CPSF1-206ENST00000531480 RPS12P25398 132 aaKnown RBP17.84■□□□□ 0.45
CPSF1-206ENST00000531480 SCNN1DP51172 638 aa17.84■□□□□ 0.45
CPSF1-206ENST00000531480 FKBP1AP62942 108 aaKnown RBP17.84■□□□□ 0.45
CPSF1-206ENST00000531480 OS9Q13438 667 aaPredicted RBP17.84■□□□□ 0.45
CPSF1-206ENST00000531480 DCAF8Q5TAQ9 597 aa17.84■□□□□ 0.45
CPSF1-206ENST00000531480 DPF2Q92785 391 aa17.84■□□□□ 0.45
CPSF1-206ENST00000531480 XAGE2Q96GT9 111 aa17.84■□□□□ 0.45
CPSF1-206ENST00000531480 PDS5AQ29RF7 1337 aaKnown RBP17.83■□□□□ 0.44
CPSF1-206ENST00000531480 AKAP11Q9UKA4 1901 aa17.83■□□□□ 0.44
CPSF1-206ENST00000531480 HSPA6P17066 643 aa17.83■□□□□ 0.44
CPSF1-206ENST00000531480 ADORA1P30542 326 aa17.83■□□□□ 0.44
CPSF1-206ENST00000531480 IRX6P78412 446 aaPredicted RBP17.83■□□□□ 0.44
CPSF1-206ENST00000531480 AGBL3Q8NEM8 1001 aa17.83■□□□□ 0.44
CPSF1-206ENST00000531480 EAF2Q96CJ1 260 aaPredicted RBP17.83■□□□□ 0.44
CPSF1-206ENST00000531480 ADAMTSL1Q8N6G6 1762 aa17.83■□□□□ 0.44
CPSF1-206ENST00000531480 COL1A1P02452 1464 aaPredicted RBP17.82■□□□□ 0.44
CPSF1-206ENST00000531480 MYO3BQ8WXR4 1341 aa17.82■□□□□ 0.44
CPSF1-206ENST00000531480 SEMA3EO15041 775 aa17.82■□□□□ 0.44
CPSF1-206ENST00000531480 CCDC102BQ68D86 513 aa17.82■□□□□ 0.44
CPSF1-206ENST00000531480 TTLL5Q6EMB2 1281 aa17.82■□□□□ 0.44
CPSF1-206ENST00000531480 RSBN1LQ6PCB5 846 aaPredicted RBP17.82■□□□□ 0.44
CPSF1-206ENST00000531480 IQCA1LA6NCM1 817 aa17.81■□□□□ 0.44
CPSF1-206ENST00000531480 VEGFAP15692 232 aaPredicted RBP17.81■□□□□ 0.44
CPSF1-206ENST00000531480 PHKA1P46020 1223 aa17.81■□□□□ 0.44
CPSF1-206ENST00000531480 GMPSP49915 693 aaPredicted RBP17.81■□□□□ 0.44
CPSF1-206ENST00000531480 MMP14P50281 582 aa17.81■□□□□ 0.44
CPSF1-206ENST00000531480 VPS37DQ86XT2 251 aa17.81■□□□□ 0.44
CPSF1-206ENST00000531480 C16orf71Q8IYS4 520 aaPredicted RBP17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 133.1 ms