RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 SP8Q8IXZ3 490 aa9.29□□□□□ -0.92
USP4-211ENST00000485450 GRAPLQ8TC17 118 aaPredicted RBP9.29□□□□□ -0.92
USP4-211ENST00000485450 IRF6O14896 467 aa9.29□□□□□ -0.92
USP4-211ENST00000485450 SPRYD3Q8NCJ5 442 aa9.29□□□□□ -0.92
USP4-211ENST00000485450 DNAJC2Q99543 621 aaKnown RBP9.29□□□□□ -0.92
USP4-211ENST00000485450 MED23Q9ULK4 1368 aa9.29□□□□□ -0.92
USP4-211ENST00000485450 ANXA1P04083 346 aa9.28□□□□□ -0.92
USP4-211ENST00000485450 DPEP1P16444 411 aa9.28□□□□□ -0.92
USP4-211ENST00000485450 EIF2S2P20042 333 aaKnown RBP9.28□□□□□ -0.92
USP4-211ENST00000485450 MCM5P33992 734 aa9.28□□□□□ -0.92
USP4-211ENST00000485450 KCNJ4P48050 445 aa9.28□□□□□ -0.92
USP4-211ENST00000485450 TSC1Q92574 1164 aa9.28□□□□□ -0.92
USP4-211ENST00000485450 ATP6V0A2Q9Y487 856 aa9.28□□□□□ -0.92
USP4-211ENST00000485450 BBOX1O75936 387 aa9.28□□□□□ -0.92
USP4-211ENST00000485450 TRPM7Q96QT4 1865 aa9.28□□□□□ -0.92
USP4-211ENST00000485450 ALDH1B1P30837 517 aa9.28□□□□□ -0.92
USP4-211ENST00000485450 EGFL6Q8IUX8 553 aa9.28□□□□□ -0.92
USP4-211ENST00000485450 CNKSR1Q969H4 720 aa9.28□□□□□ -0.92
USP4-211ENST00000485450 ZNF622Q969S3 477 aaKnown RBP eCLIP9.28□□□□□ -0.922e-6■■□□□ 13.5
USP4-211ENST00000485450 ZBTB3Q9H5J0 574 aa9.28□□□□□ -0.92
USP4-211ENST00000485450 BSDC1Q9NW68 430 aaPredicted RBP9.28□□□□□ -0.92
USP4-211ENST00000485450 ATF5Q9Y2D1 282 aaPredicted RBP9.28□□□□□ -0.92
USP4-211ENST00000485450 LOC102724159A0A0B4J2E5 919 aa9.27□□□□□ -0.92
USP4-211ENST00000485450 IPO8O15397 1037 aaKnown RBP9.27□□□□□ -0.92
USP4-211ENST00000485450 PWP2Q15269 919 aaKnown RBP9.27□□□□□ -0.92
USP4-211ENST00000485450 MYD88Q99836 296 aa9.27□□□□□ -0.92
USP4-211ENST00000485450 FKBP1AP62942 108 aaKnown RBP9.27□□□□□ -0.93
USP4-211ENST00000485450 PDLIM2Q96JY6 352 aa9.27□□□□□ -0.93
USP4-211ENST00000485450 SRCIN1Q9C0H9 1055 aa9.27□□□□□ -0.93
USP4-211ENST00000485450 ZBTB40Q9NUA8 1239 aa9.27□□□□□ -0.93
USP4-211ENST00000485450 ZKSCAN2Q63HK3 967 aa9.27□□□□□ -0.93
USP4-211ENST00000485450 NBPF5PQ86XG9 351 aaPredicted RBP9.27□□□□□ -0.93
USP4-211ENST00000485450 GBP4Q96PP9 640 aa9.27□□□□□ -0.93
USP4-211ENST00000485450 PIM2Q9P1W9 311 aa9.27□□□□□ -0.93
USP4-211ENST00000485450 SIPA1L1O43166 1804 aa9.27□□□□□ -0.93
USP4-211ENST00000485450 NFKBIEO00221 500 aa9.26□□□□□ -0.93
USP4-211ENST00000485450 BCAR3O75815 825 aa9.26□□□□□ -0.93
USP4-211ENST00000485450 RBM17Q96I25 401 aaKnown RBP9.26□□□□□ -0.93
USP4-211ENST00000485450 LAMA4Q16363 1823 aa9.26□□□□□ -0.93
USP4-211ENST00000485450 RLBP1P12271 317 aa9.26□□□□□ -0.93
USP4-211ENST00000485450 FGFR2P21802 821 aa9.26□□□□□ -0.93
USP4-211ENST00000485450 RIC3Q7Z5B4 369 aa9.26□□□□□ -0.93
USP4-211ENST00000485450 TNPO1Q92973 898 aaKnown RBP9.26□□□□□ -0.93
USP4-211ENST00000485450 COPRSQ9NQ92 184 aa9.26□□□□□ -0.93
USP4-211ENST00000485450 CIZ1Q9ULV3 898 aaPredicted RBP9.26□□□□□ -0.93
USP4-211ENST00000485450 ZKSCAN5Q9Y2L8 839 aa9.26□□□□□ -0.93
USP4-211ENST00000485450 MSL1Q68DK7 614 aa9.26□□□□□ -0.93
USP4-211ENST00000485450 SSH3Q8TE77 659 aa9.26□□□□□ -0.93
USP4-211ENST00000485450 COL1A1P02452 1464 aaPredicted RBP9.25□□□□□ -0.93
USP4-211ENST00000485450 IRS4O14654 1257 aaPredicted RBP9.25□□□□□ -0.93
USP4-211ENST00000485450 GRIN3BO60391 1043 aa9.25□□□□□ -0.93
USP4-211ENST00000485450 FKBP4Q02790 459 aaKnown RBP eCLIP9.25□□□□□ -0.93
USP4-211ENST00000485450 EPHA10Q5JZY3 1008 aa9.25□□□□□ -0.93
USP4-211ENST00000485450 SUCLG2Q96I99 432 aa9.25□□□□□ -0.93
USP4-211ENST00000485450 SMC4Q9NTJ3 1288 aa9.25□□□□□ -0.93
USP4-211ENST00000485450 ZNF804BA4D1E1 1349 aa9.25□□□□□ -0.93
USP4-211ENST00000485450 NEXNQ0ZGT2 675 aa9.25□□□□□ -0.93
USP4-211ENST00000485450 MVPQ14764 893 aaKnown RBP9.25□□□□□ -0.93
USP4-211ENST00000485450 CWF19L2Q2TBE0 894 aaKnown RBP9.25□□□□□ -0.93
USP4-211ENST00000485450 NECTIN2Q92692 538 aa9.25□□□□□ -0.93
USP4-211ENST00000485450 L3MBTL3Q96JM7 780 aaPredicted RBP9.25□□□□□ -0.93
USP4-211ENST00000485450 GPR108Q9NPR9 543 aa9.25□□□□□ -0.93
USP4-211ENST00000485450 RIPOR2Q9Y4F9 1068 aa9.25□□□□□ -0.93
USP4-211ENST00000485450 H0YIN7 160 aa9.25□□□□□ -0.93
USP4-211ENST00000485450 FZD9O00144 591 aa9.25□□□□□ -0.93
USP4-211ENST00000485450 TICAM2Q86XR7 235 aa9.25□□□□□ -0.93
USP4-211ENST00000485450 TTLL6Q8N841 843 aa9.25□□□□□ -0.93
USP4-211ENST00000485450 MYRIPQ8NFW9 859 aa9.25□□□□□ -0.93
USP4-211ENST00000485450 ZNF512BQ96KM6 892 aaPredicted RBP9.25□□□□□ -0.93
USP4-211ENST00000485450 GREB1LQ9C091 1923 aaPredicted RBP9.24□□□□□ -0.93
USP4-211ENST00000485450 COL2A1P02458 1487 aaPredicted RBP9.24□□□□□ -0.93
USP4-211ENST00000485450 TRIM6-TRIM34B2RNG4 842 aa9.24□□□□□ -0.93
USP4-211ENST00000485450 FKBP5Q13451 457 aaPredicted RBP9.24□□□□□ -0.93
USP4-211ENST00000485450 RAB3GAP1Q15042 981 aa9.24□□□□□ -0.93
USP4-211ENST00000485450 CT47A1Q5JQC4 288 aaPredicted RBP9.24□□□□□ -0.93
USP4-211ENST00000485450 PRPF40BQ6NWY9 871 aaKnown RBP9.24□□□□□ -0.93
USP4-211ENST00000485450 C2CD5Q86YS7 1000 aa9.24□□□□□ -0.93
USP4-211ENST00000485450 RTKN2Q8IZC4 609 aa9.24□□□□□ -0.93
USP4-211ENST00000485450 TRIM34Q9BYJ4 488 aa9.24□□□□□ -0.93
USP4-211ENST00000485450 MYO5AQ9Y4I1 1855 aaKnown RBP9.24□□□□□ -0.93
USP4-211ENST00000485450 SLFN14P0C7P3 912 aa9.24□□□□□ -0.93
USP4-211ENST00000485450 PATL2C9JE40 543 aaKnown RBP9.23□□□□□ -0.93
USP4-211ENST00000485450 NBPF7P0C2Y1 421 aaPredicted RBP9.23□□□□□ -0.93
USP4-211ENST00000485450 CCDC152Q4G0S7 254 aa9.23□□□□□ -0.93
USP4-211ENST00000485450 OTOFQ9HC10 1997 aa9.23□□□□□ -0.93
USP4-211ENST00000485450 GTF2F1P35269 517 aaKnown RBP eCLIP9.23□□□□□ -0.93
USP4-211ENST00000485450 DALRD3Q5D0E6 543 aaKnown RBP9.23□□□□□ -0.93
USP4-211ENST00000485450 AXDND1Q5T1B0 1012 aaPredicted RBP9.23□□□□□ -0.93
USP4-211ENST00000485450 ATG9AQ7Z3C6 839 aa9.23□□□□□ -0.93
USP4-211ENST00000485450 HSCBQ8IWL3 235 aa9.23□□□□□ -0.93
USP4-211ENST00000485450 SMC5Q8IY18 1101 aa9.23□□□□□ -0.93
USP4-211ENST00000485450 NLRP3Q96P20 1036 aa9.23□□□□□ -0.93
USP4-211ENST00000485450 SPDYE4A6NLX3 237 aa9.23□□□□□ -0.93
USP4-211ENST00000485450 GNAI3P08754 354 aa9.23□□□□□ -0.93
USP4-211ENST00000485450 RBM25P49756 843 aaKnown RBP9.23□□□□□ -0.93
USP4-211ENST00000485450 ZNF445P59923 1031 aa9.23□□□□□ -0.93
USP4-211ENST00000485450 DZIP1LQ8IYY4 767 aaKnown RBP9.23□□□□□ -0.93
USP4-211ENST00000485450 SYNE4Q8N205 404 aa9.23□□□□□ -0.93
USP4-211ENST00000485450 C22orf23Q9BZE7 217 aa9.23□□□□□ -0.93
USP4-211ENST00000485450 TRMT112Q9UI30 125 aaKnown RBP9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 123.1 ms