RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 SNRKQ9NRH2 765 aa7.64□□□□□ -1.19
PTPN4-210ENST00000485247 LOC102724428A0A0B4J2F2 783 aa7.63□□□□□ -1.19
PTPN4-210ENST00000485247 SIK1P57059 783 aa7.63□□□□□ -1.19
PTPN4-210ENST00000485247 RASSF7Q02833 373 aa7.63□□□□□ -1.19
PTPN4-210ENST00000485247 TRAPPC3LQ5T215 181 aa7.63□□□□□ -1.19
PTPN4-210ENST00000485247 LINC00528Q8N1L1 170 aa7.63□□□□□ -1.19
PTPN4-210ENST00000485247 USHBP1Q8N6Y0 703 aa7.63□□□□□ -1.19
PTPN4-210ENST00000485247 CDV3Q9UKY7 258 aaKnown RBP7.63□□□□□ -1.19
PTPN4-210ENST00000485247 EMILIN1Q9Y6C2 1016 aa7.63□□□□□ -1.19
PTPN4-210ENST00000485247 PARP3Q9Y6F1 533 aa7.63□□□□□ -1.19
PTPN4-210ENST00000485247 BRCA1P38398 1863 aaKnown RBP7.62□□□□□ -1.19
PTPN4-210ENST00000485247 CNTNAP1P78357 1384 aa7.62□□□□□ -1.19
PTPN4-210ENST00000485247 SOBPA7XYQ1 873 aa7.62□□□□□ -1.19
PTPN4-210ENST00000485247 FBXO45P0C2W1 286 aa7.62□□□□□ -1.19
PTPN4-210ENST00000485247 CHRNA5P30532 468 aa7.62□□□□□ -1.19
PTPN4-210ENST00000485247 HOXC9P31274 260 aa7.62□□□□□ -1.19
PTPN4-210ENST00000485247 VEGFBP49765 207 aa7.62□□□□□ -1.19
PTPN4-210ENST00000485247 ITPK1Q13572 414 aa7.62□□□□□ -1.19
PTPN4-210ENST00000485247 SCARF1Q14162 830 aa7.62□□□□□ -1.19
PTPN4-210ENST00000485247 C6orf118Q5T5N4 469 aa7.62□□□□□ -1.19
PTPN4-210ENST00000485247 RAPGEF4Q8WZA2 1011 aa7.62□□□□□ -1.19
PTPN4-210ENST00000485247 PIGBQ92521 554 aa7.62□□□□□ -1.19
PTPN4-210ENST00000485247 FAM208AQ9UK61 1670 aaKnown RBP7.62□□□□□ -1.19
PTPN4-210ENST00000485247 ARFGEF1Q9Y6D6 1849 aa7.62□□□□□ -1.19
PTPN4-210ENST00000485247 SBNO2Q9Y2G9 1366 aa7.61□□□□□ -1.19
PTPN4-210ENST00000485247 TERTO14746 1132 aaKnown RBP7.61□□□□□ -1.19
PTPN4-210ENST00000485247 HSPA8P11142 646 aaKnown RBP7.61□□□□□ -1.19
PTPN4-210ENST00000485247 FBLN1P23142 703 aa7.61□□□□□ -1.19
PTPN4-210ENST00000485247 AMPHP49418 695 aa7.61□□□□□ -1.19
PTPN4-210ENST00000485247 CBLBQ13191 982 aa7.61□□□□□ -1.19
PTPN4-210ENST00000485247 NBPF6Q5VWK0 638 aa7.61□□□□□ -1.19
PTPN4-210ENST00000485247 NBPF4Q96M43 638 aa7.61□□□□□ -1.19
PTPN4-210ENST00000485247 RTCBQ9Y3I0 505 aaKnown RBP7.61□□□□□ -1.19
PTPN4-210ENST00000485247 SBF1O95248 1867 aa7.61□□□□□ -1.19
PTPN4-210ENST00000485247 CGNL1Q0VF96 1302 aa7.6□□□□□ -1.19
PTPN4-210ENST00000485247 MAP3K19Q56UN5 1328 aa7.6□□□□□ -1.19
PTPN4-210ENST00000485247 PCDH11XQ9BZA7 1347 aa7.6□□□□□ -1.19
PTPN4-210ENST00000485247 PCDH11YQ9BZA8 1340 aa7.6□□□□□ -1.19
PTPN4-210ENST00000485247 ZBBXA8MT70 800 aa7.6□□□□□ -1.19
PTPN4-210ENST00000485247 CYP27B1O15528 508 aa7.6□□□□□ -1.19
PTPN4-210ENST00000485247 WFS1O76024 890 aa7.6□□□□□ -1.19
PTPN4-210ENST00000485247 GYS1P13807 737 aa7.6□□□□□ -1.19
PTPN4-210ENST00000485247 TATP17735 454 aaPredicted RBP7.6□□□□□ -1.19
PTPN4-210ENST00000485247 LMNB1P20700 586 aa7.6□□□□□ -1.19
PTPN4-210ENST00000485247 NBPF20Q3BBV1 942 aa7.6□□□□□ -1.19
PTPN4-210ENST00000485247 DZIP3Q86Y13 1208 aaKnown RBP7.6□□□□□ -1.19
PTPN4-210ENST00000485247 TMC1Q8TDI8 760 aa7.6□□□□□ -1.19
PTPN4-210ENST00000485247 TMPRSS4Q9NRS4 437 aa7.6□□□□□ -1.19
PTPN4-210ENST00000485247 RGPD2P0DJD1 1756 aa7.6□□□□□ -1.19
PTPN4-210ENST00000485247 C4AP0C0L4 1744 aa7.6□□□□□ -1.19
PTPN4-210ENST00000485247 MON2Q7Z3U7 1717 aa7.6□□□□□ -1.19
PTPN4-210ENST00000485247 ESPNB1AK53 854 aa7.59□□□□□ -1.19
PTPN4-210ENST00000485247 RFC4P35249 363 aa7.59□□□□□ -1.19
PTPN4-210ENST00000485247 Q6ZVU0 165 aa7.59□□□□□ -1.19
PTPN4-210ENST00000485247 PGPEP1Q9NXJ5 209 aa7.59□□□□□ -1.19
PTPN4-210ENST00000485247 ASAP1Q9ULH1 1129 aa7.59□□□□□ -1.19
PTPN4-210ENST00000485247 RAB3GAP2Q9H2M9 1393 aa7.59□□□□□ -1.2
PTPN4-210ENST00000485247 BMP2P12643 396 aa7.58□□□□□ -1.2
PTPN4-210ENST00000485247 RAB15P59190 212 aa7.58□□□□□ -1.2
PTPN4-210ENST00000485247 HDGFL2Q7Z4V5 671 aaPredicted RBP7.58□□□□□ -1.2
PTPN4-210ENST00000485247 KDM6AO15550 1401 aaPredicted RBP7.58□□□□□ -1.2
PTPN4-210ENST00000485247 MAP2P11137 1827 aaKnown RBP7.57□□□□□ -1.2
PTPN4-210ENST00000485247 CD163L1Q9NR16 1453 aa7.57□□□□□ -1.2
PTPN4-210ENST00000485247 TMEM88BA6NKF7 163 aa7.57□□□□□ -1.2
PTPN4-210ENST00000485247 ERVH48-1M5A8F1 160 aa7.57□□□□□ -1.2
PTPN4-210ENST00000485247 DHX9Q08211 1270 aaKnown RBP7.57□□□□□ -1.2
PTPN4-210ENST00000485247 SLC12A5Q9H2X9 1139 aa7.57□□□□□ -1.2
PTPN4-210ENST00000485247 TMOD3Q9NYL9 352 aa7.57□□□□□ -1.2
PTPN4-210ENST00000485247 NXF1Q9UBU9 619 aaKnown RBP7.57□□□□□ -1.2
PTPN4-210ENST00000485247 NDUFB9Q9Y6M9 179 aa7.57□□□□□ -1.2
PTPN4-210ENST00000485247 ITGB4P16144 1822 aa7.57□□□□□ -1.2
PTPN4-210ENST00000485247 PASKQ96RG2 1323 aa7.56□□□□□ -1.2
PTPN4-210ENST00000485247 EDC4Q6P2E9 1401 aaKnown RBP7.56□□□□□ -1.2
PTPN4-210ENST00000485247 LILRA1O75019 489 aa7.56□□□□□ -1.2
PTPN4-210ENST00000485247 MAP2K1Q02750 393 aaPredicted RBP7.56□□□□□ -1.2
PTPN4-210ENST00000485247 DDR1Q08345 913 aa7.56□□□□□ -1.2
PTPN4-210ENST00000485247 RRS1Q15050 365 aaKnown RBP7.56□□□□□ -1.2
PTPN4-210ENST00000485247 COG3Q96JB2 828 aa7.56□□□□□ -1.2
PTPN4-210ENST00000485247 AGBL1Q96MI9 1066 aa7.56□□□□□ -1.2
PTPN4-210ENST00000485247 TSEN34Q9BSV6 310 aaKnown RBP7.56□□□□□ -1.2
PTPN4-210ENST00000485247 SRP68Q9UHB9 627 aaKnown RBP7.56□□□□□ -1.2
PTPN4-210ENST00000485247 DNMT3LQ9UJW3 386 aa7.56□□□□□ -1.2
PTPN4-210ENST00000485247 PCDHB9Q9Y5E1 797 aa7.56□□□□□ -1.2
PTPN4-210ENST00000485247 RPS6KA4O75676 772 aa7.55□□□□□ -1.2
PTPN4-210ENST00000485247 UPP2O95045 317 aa7.55□□□□□ -1.2
PTPN4-210ENST00000485247 NR1H3Q13133 447 aa7.55□□□□□ -1.2
PTPN4-210ENST00000485247 DEFB115Q30KQ5 88 aa7.55□□□□□ -1.2
PTPN4-210ENST00000485247 ATG3Q9NT62 314 aa7.55□□□□□ -1.2
PTPN4-210ENST00000485247 TBC1D2BQ9UPU7 963 aa7.55□□□□□ -1.2
PTPN4-210ENST00000485247 WDR33Q9C0J8 1336 aaKnown RBP7.54□□□□□ -1.2
PTPN4-210ENST00000485247 NFKBIEO00221 500 aa7.54□□□□□ -1.2
PTPN4-210ENST00000485247 SPINT1O43278 529 aa7.54□□□□□ -1.2
PTPN4-210ENST00000485247 DDNO94850 711 aaPredicted RBP7.54□□□□□ -1.2
PTPN4-210ENST00000485247 ADD1P35611 737 aaKnown RBP7.54□□□□□ -1.2
PTPN4-210ENST00000485247 KDF1Q8NAX2 398 aaPredicted RBP7.54□□□□□ -1.2
PTPN4-210ENST00000485247 SLC4A9Q96Q91 983 aa7.54□□□□□ -1.2
PTPN4-210ENST00000485247 TERF2IPQ9NYB0 399 aa7.54□□□□□ -1.2
PTPN4-210ENST00000485247 TIAM2Q8IVF5 1701 aa7.54□□□□□ -1.2
PTPN4-210ENST00000485247 A0A1W2PP64 1363 aa7.54□□□□□ -1.2
PTPN4-210ENST00000485247 VIRMAQ69YN4 1812 aaKnown RBP7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms