RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 FBXW7Q969H0 707 aa22.22■■□□□ 1.15
VIM-204ENST00000478746 GCC1Q96CN9 775 aa22.22■■□□□ 1.15
VIM-204ENST00000478746 CDC5LQ99459 802 aaKnown RBP22.22■■□□□ 1.15
VIM-204ENST00000478746 MXD3Q9BW11 206 aa22.22■■□□□ 1.15
VIM-204ENST00000478746 MBIPQ9NS73 344 aa22.22■■□□□ 1.15
VIM-204ENST00000478746 PRKG1Q13976 671 aa22.21■■□□□ 1.15
VIM-204ENST00000478746 CFHR5Q9BXR6 569 aa22.21■■□□□ 1.15
VIM-204ENST00000478746 R3HDMLQ9H3Y0 253 aa22.21■■□□□ 1.15
VIM-204ENST00000478746 STRIP1Q5VSL9 837 aa22.2■■□□□ 1.14
VIM-204ENST00000478746 MINPP1Q9UNW1 487 aa22.2■■□□□ 1.14
VIM-204ENST00000478746 MYO3BQ8WXR4 1341 aa22.2■■□□□ 1.14
VIM-204ENST00000478746 ELL2O00472 640 aaPredicted RBP22.19■■□□□ 1.14
VIM-204ENST00000478746 MMP14P50281 582 aa22.19■■□□□ 1.14
VIM-204ENST00000478746 WDR43Q15061 677 aaKnown RBP eCLIP22.19■■□□□ 1.14
VIM-204ENST00000478746 METTL22Q9BUU2 404 aaPredicted RBP22.19■■□□□ 1.14
VIM-204ENST00000478746 BSDC1Q9NW68 430 aaPredicted RBP22.19■■□□□ 1.14
VIM-204ENST00000478746 MED23Q9ULK4 1368 aa22.19■■□□□ 1.14
VIM-204ENST00000478746 ALDH1A1P00352 501 aa22.18■■□□□ 1.14
VIM-204ENST00000478746 CCT4P50991 539 aaKnown RBP22.18■■□□□ 1.14
VIM-204ENST00000478746 COA1Q9GZY4 146 aa22.18■■□□□ 1.14
VIM-204ENST00000478746 SASH1O94885 1247 aa22.17■■□□□ 1.14
VIM-204ENST00000478746 DDX58O95786 925 aaKnown RBP22.17■■□□□ 1.14
VIM-204ENST00000478746 CTSWP56202 376 aa22.17■■□□□ 1.14
VIM-204ENST00000478746 LDLRAD1Q5T700 205 aa22.17■■□□□ 1.14
VIM-204ENST00000478746 SPRYD7Q5W111 196 aa22.17■■□□□ 1.14
VIM-204ENST00000478746 ZNF853P0CG23 659 aa22.16■■□□□ 1.14
VIM-204ENST00000478746 INHBEP58166 350 aa22.16■■□□□ 1.14
VIM-204ENST00000478746 TTLL5Q6EMB2 1281 aa22.16■■□□□ 1.14
VIM-204ENST00000478746 APOBEC3FQ8IUX4 373 aaKnown RBP22.16■■□□□ 1.14
VIM-204ENST00000478746 TTLL11Q8NHH1 800 aa22.16■■□□□ 1.14
VIM-204ENST00000478746 ANGEL1Q9UNK9 670 aaKnown RBP22.16■■□□□ 1.14
VIM-204ENST00000478746 ADAMTS8Q9UP79 889 aa22.16■■□□□ 1.14
VIM-204ENST00000478746 SLC10A4Q96EP9 437 aa22.15■■□□□ 1.14
VIM-204ENST00000478746 INTS3Q68E01 1043 aaKnown RBP22.14■■□□□ 1.13
VIM-204ENST00000478746 TXNRD3Q86VQ6 643 aa22.14■■□□□ 1.13
VIM-204ENST00000478746 GREM2Q9H772 168 aa22.14■■□□□ 1.13
VIM-204ENST00000478746 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.14■■□□□ 1.13
VIM-204ENST00000478746 MAP3K2Q9Y2U5 619 aa22.14■■□□□ 1.13
VIM-204ENST00000478746 LEMD3Q9Y2U8 911 aa22.14■■□□□ 1.13
VIM-204ENST00000478746 TRIM17Q9Y577 477 aa22.14■■□□□ 1.13
VIM-204ENST00000478746 MYBBP1AQ9BQG0 1328 aaKnown RBP22.13■■□□□ 1.13
VIM-204ENST00000478746 MANSC4A6NHS7 340 aaPredicted RBP22.13■■□□□ 1.13
VIM-204ENST00000478746 GNAI1P63096 354 aa22.13■■□□□ 1.13
VIM-204ENST00000478746 IFNL1Q8IU54 200 aa22.13■■□□□ 1.13
VIM-204ENST00000478746 KIAA0825Q8IV33 1275 aa22.13■■□□□ 1.13
VIM-204ENST00000478746 CHMP4AQ9BY43 222 aa22.13■■□□□ 1.13
VIM-204ENST00000478746 HABP4Q5JVS0 413 aaKnown RBP22.12■■□□□ 1.13
VIM-204ENST00000478746 CCDC30Q5VVM6 783 aa22.12■■□□□ 1.13
VIM-204ENST00000478746 IFT57Q9NWB7 429 aa22.12■■□□□ 1.13
VIM-204ENST00000478746 FZD1Q9UP38 647 aa22.12■■□□□ 1.13
VIM-204ENST00000478746 GTF2IP78347 998 aa22.11■■□□□ 1.13
VIM-204ENST00000478746 OTOP1Q7RTM1 612 aa22.11■■□□□ 1.13
VIM-204ENST00000478746 C8orf58Q8NAV2 365 aa22.11■■□□□ 1.13
VIM-204ENST00000478746 ZBED3Q96IU2 234 aaPredicted RBP22.11■■□□□ 1.13
VIM-204ENST00000478746 DEFB129Q9H1M3 183 aa22.11■■□□□ 1.13
VIM-204ENST00000478746 POTEFA5A3E0 1075 aa22.1■■□□□ 1.13
VIM-204ENST00000478746 IGKV5-2P06315 115 aa22.1■■□□□ 1.13
VIM-204ENST00000478746 IGHMBP2P38935 993 aaKnown RBP22.1■■□□□ 1.13
VIM-204ENST00000478746 CALD1Q05682 793 aaKnown RBP22.1■■□□□ 1.13
VIM-204ENST00000478746 KSR2Q6VAB6 950 aa22.1■■□□□ 1.13
VIM-204ENST00000478746 ZNF804BA4D1E1 1349 aa22.09■■□□□ 1.13
VIM-204ENST00000478746 PI4KAP2A4QPH2 592 aa22.09■■□□□ 1.13
VIM-204ENST00000478746 PPP1R12BO60237 982 aaPredicted RBP22.09■■□□□ 1.13
VIM-204ENST00000478746 ZBTB48P10074 688 aaPredicted RBP22.09■■□□□ 1.13
VIM-204ENST00000478746 NEXNQ0ZGT2 675 aa22.09■■□□□ 1.13
VIM-204ENST00000478746 DLGAP5Q15398 846 aa22.09■■□□□ 1.13
VIM-204ENST00000478746 PI4KAP1Q8N8J0 262 aa22.09■■□□□ 1.13
VIM-204ENST00000478746 ANKRD2Q9GZV1 360 aa22.09■■□□□ 1.13
VIM-204ENST00000478746 ZNF646O15015 1829 aaPredicted RBP22.08■■□□□ 1.13
VIM-204ENST00000478746 MAP3K11Q16584 847 aa22.08■■□□□ 1.13
VIM-204ENST00000478746 WNK4Q96J92 1243 aa22.08■■□□□ 1.13
VIM-204ENST00000478746 SPEF2Q9C093 1822 aa22.08■■□□□ 1.12
VIM-204ENST00000478746 KLRK1P26718 216 aa22.07■■□□□ 1.12
VIM-204ENST00000478746 ERO1AQ96HE7 468 aa22.07■■□□□ 1.12
VIM-204ENST00000478746 CLMNQ96JQ2 1002 aa22.07■■□□□ 1.12
VIM-204ENST00000478746 MKI67P46013 3256 aaKnown RBP22.07■■□□□ 1.12
VIM-204ENST00000478746 MYH3P11055 1940 aa22.06■■□□□ 1.12
VIM-204ENST00000478746 IGF2BP3O00425 579 aaKnown RBP eCLIP22.06■■□□□ 1.12
VIM-204ENST00000478746 CWF19L2Q2TBE0 894 aaKnown RBP22.06■■□□□ 1.12
VIM-204ENST00000478746 OTUD7BQ6GQQ9 843 aa22.06■■□□□ 1.12
VIM-204ENST00000478746 MPHOSPH8Q99549 860 aa22.06■■□□□ 1.12
VIM-204ENST00000478746 PTPN22Q9Y2R2 807 aa22.06■■□□□ 1.12
VIM-204ENST00000478746 COL1A1P02452 1464 aaPredicted RBP22.05■■□□□ 1.12
VIM-204ENST00000478746 UNCXA6NJT0 531 aa22.05■■□□□ 1.12
VIM-204ENST00000478746 H7C1W4 665 aa22.05■■□□□ 1.12
VIM-204ENST00000478746 APAF1O14727 1248 aa22.05■■□□□ 1.12
VIM-204ENST00000478746 KCNJ4P48050 445 aa22.05■■□□□ 1.12
VIM-204ENST00000478746 SUPT20HL1Q3ZLR7 823 aa22.05■■□□□ 1.12
VIM-204ENST00000478746 UBE3BQ7Z3V4 1068 aa22.05■■□□□ 1.12
VIM-204ENST00000478746 CD209Q9NNX6 404 aa22.05■■□□□ 1.12
VIM-204ENST00000478746 PPP2R3BQ9Y5P8 575 aa22.05■■□□□ 1.12
VIM-204ENST00000478746 KIAA0100Q14667 2235 aaKnown RBP22.04■■□□□ 1.12
VIM-204ENST00000478746 HTTP42858 3142 aa22.04■■□□□ 1.12
VIM-204ENST00000478746 NEURL1BA8MQ27 555 aa22.04■■□□□ 1.12
VIM-204ENST00000478746 ITGA6P23229 1130 aa22.04■■□□□ 1.12
VIM-204ENST00000478746 MTMR14Q8NCE2 650 aa22.04■■□□□ 1.12
VIM-204ENST00000478746 CD99L2Q8TCZ2 262 aa22.04■■□□□ 1.12
VIM-204ENST00000478746 MYO1BO43795 1136 aa22.03■■□□□ 1.12
VIM-204ENST00000478746 TSPYL6Q8N831 410 aa22.03■■□□□ 1.12
VIM-204ENST00000478746 EFCC1Q9HA90 598 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms