RNA–Protein interactions for RNA: ENST00000472119.1

SCN9A-206, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 2

Gene SCN9A, Length 905 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-206ENST00000472119 MCM6Q14566 821 aa10.48□□□□□ -0.73
SCN9A-206ENST00000472119 INTS5Q6P9B9 1019 aaKnown RBP10.48□□□□□ -0.73
SCN9A-206ENST00000472119 DCAF11Q8TEB1 546 aa10.48□□□□□ -0.73
SCN9A-206ENST00000472119 SRA1Q9HD15 236 aaKnown RBP10.48□□□□□ -0.73
SCN9A-206ENST00000472119 KLK14Q9P0G3 267 aa10.48□□□□□ -0.73
SCN9A-206ENST00000472119 J3QW42 95 aa10.47□□□□□ -0.73
SCN9A-206ENST00000472119 ARSDP51689 593 aa10.47□□□□□ -0.73
SCN9A-206ENST00000472119 NFIAQ12857 509 aa10.47□□□□□ -0.73
SCN9A-206ENST00000472119 SETDB1Q15047 1291 aa10.47□□□□□ -0.73
SCN9A-206ENST00000472119 KANK4Q5T7N3 995 aaPredicted RBP10.47□□□□□ -0.73
SCN9A-206ENST00000472119 WWC1Q8IX03 1113 aa10.47□□□□□ -0.73
SCN9A-206ENST00000472119 MAGI3Q5TCQ9 1506 aa10.47□□□□□ -0.73
SCN9A-206ENST00000472119 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.46□□□□□ -0.73
SCN9A-206ENST00000472119 MAP4K3Q8IVH8 894 aa10.46□□□□□ -0.73
SCN9A-206ENST00000472119 MTUS2Q5JR59 1369 aa10.46□□□□□ -0.74
SCN9A-206ENST00000472119 TSPOAP1O95153 1857 aa10.46□□□□□ -0.74
SCN9A-206ENST00000472119 TLR7Q9NYK1 1049 aaKnown RBP10.45□□□□□ -0.74
SCN9A-206ENST00000472119 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.44□□□□□ -0.74
SCN9A-206ENST00000472119 DKK1O94907 266 aa10.44□□□□□ -0.74
SCN9A-206ENST00000472119 WNT11O96014 354 aa10.44□□□□□ -0.74
SCN9A-206ENST00000472119 GHRHP01286 108 aa10.44□□□□□ -0.74
SCN9A-206ENST00000472119 DTX1Q86Y01 620 aa10.44□□□□□ -0.74
SCN9A-206ENST00000472119 ARMC10Q8N2F6 343 aa10.44□□□□□ -0.74
SCN9A-206ENST00000472119 KIF14Q15058 1648 aa10.44□□□□□ -0.74
SCN9A-206ENST00000472119 MAP3K4Q9Y6R4 1608 aa10.44□□□□□ -0.74
SCN9A-206ENST00000472119 LOC102724428A0A0B4J2F2 783 aa10.43□□□□□ -0.74
SCN9A-206ENST00000472119 SIK1P57059 783 aa10.43□□□□□ -0.74
SCN9A-206ENST00000472119 UTP4Q969X6 686 aaKnown RBP10.43□□□□□ -0.74
SCN9A-206ENST00000472119 NSUN5Q96P11 429 aaKnown RBP10.43□□□□□ -0.74
SCN9A-206ENST00000472119 KRTAP4-9Q9BYQ8 210 aa10.43□□□□□ -0.74
SCN9A-206ENST00000472119 C7orf69Q9H7B7 122 aa10.43□□□□□ -0.74
SCN9A-206ENST00000472119 ABCA9Q8IUA7 1624 aa10.43□□□□□ -0.74
SCN9A-206ENST00000472119 ATP9BO43861 1147 aa10.42□□□□□ -0.74
SCN9A-206ENST00000472119 LGR5O75473 907 aa10.42□□□□□ -0.74
SCN9A-206ENST00000472119 DGKZQ13574 1117 aa10.42□□□□□ -0.74
SCN9A-206ENST00000472119 TRIM42Q8IWZ5 723 aa10.42□□□□□ -0.74
SCN9A-206ENST00000472119 HINFPQ9BQA5 517 aa10.42□□□□□ -0.74
SCN9A-206ENST00000472119 CEP41Q9BYV8 373 aa10.42□□□□□ -0.74
SCN9A-206ENST00000472119 RBSNQ9H1K0 784 aa10.42□□□□□ -0.74
SCN9A-206ENST00000472119 C11orf16Q9NQ32 467 aa10.42□□□□□ -0.74
SCN9A-206ENST00000472119 TIAM1Q13009 1591 aa10.42□□□□□ -0.74
SCN9A-206ENST00000472119 TTC37Q6PGP7 1564 aa10.42□□□□□ -0.74
SCN9A-206ENST00000472119 CFAP43Q8NDM7 1665 aa10.41□□□□□ -0.74
SCN9A-206ENST00000472119 SEC13P55735 322 aa10.41□□□□□ -0.74
SCN9A-206ENST00000472119 JAG1P78504 1218 aa10.41□□□□□ -0.74
SCN9A-206ENST00000472119 DBNDD2Q9BQY9 259 aa10.41□□□□□ -0.74
SCN9A-206ENST00000472119 ADGRE2Q9UHX3 823 aa10.41□□□□□ -0.74
SCN9A-206ENST00000472119 USP20Q9Y2K6 914 aa10.41□□□□□ -0.74
SCN9A-206ENST00000472119 LRRC9Q6ZRR7 1453 aa10.41□□□□□ -0.74
SCN9A-206ENST00000472119 TEX14Q8IWB6 1497 aa10.41□□□□□ -0.74
SCN9A-206ENST00000472119 PLCH2O75038 1416 aa10.41□□□□□ -0.74
SCN9A-206ENST00000472119 PPRC1Q5VV67 1664 aaKnown RBP10.41□□□□□ -0.74
SCN9A-206ENST00000472119 HMX2A2RU54 273 aa10.4□□□□□ -0.74
SCN9A-206ENST00000472119 PRR19A6NJB7 356 aa10.4□□□□□ -0.74
SCN9A-206ENST00000472119 MICAL2O94851 1124 aa10.4□□□□□ -0.74
SCN9A-206ENST00000472119 PSAPP07602 524 aa10.4□□□□□ -0.74
SCN9A-206ENST00000472119 EFCAB2Q5VUJ9 269 aa10.4□□□□□ -0.74
SCN9A-206ENST00000472119 RNF43Q68DV7 783 aa10.4□□□□□ -0.74
SCN9A-206ENST00000472119 ACAD11Q709F0 780 aa10.4□□□□□ -0.74
SCN9A-206ENST00000472119 UCN2Q96RP3 112 aa10.4□□□□□ -0.74
SCN9A-206ENST00000472119 TRIM33Q9UPN9 1127 aa10.4□□□□□ -0.74
SCN9A-206ENST00000472119 MAP3K1Q13233 1512 aa10.39□□□□□ -0.75
SCN9A-206ENST00000472119 WISP1O95388 367 aa10.39□□□□□ -0.75
SCN9A-206ENST00000472119 ADAMTS19Q8TE59 1207 aa10.39□□□□□ -0.75
SCN9A-206ENST00000472119 CCNB3Q8WWL7 1395 aa10.39□□□□□ -0.75
SCN9A-206ENST00000472119 EHBP1L1Q8N3D4 1523 aa10.38□□□□□ -0.75
SCN9A-206ENST00000472119 GALNT11Q8NCW6 608 aa10.38□□□□□ -0.75
SCN9A-206ENST00000472119 ZNF777Q9ULD5 760 aaPredicted RBP10.38□□□□□ -0.75
SCN9A-206ENST00000472119 PPME1Q9Y570 386 aa10.38□□□□□ -0.75
SCN9A-206ENST00000472119 FANCAO15360 1455 aa10.37□□□□□ -0.75
SCN9A-206ENST00000472119 NCOA2Q15596 1464 aa10.37□□□□□ -0.75
SCN9A-206ENST00000472119 POM121CA8CG34 1229 aa10.37□□□□□ -0.75
SCN9A-206ENST00000472119 XYLBO75191 536 aa10.37□□□□□ -0.75
SCN9A-206ENST00000472119 RAPGEF3O95398 923 aa10.37□□□□□ -0.75
SCN9A-206ENST00000472119 UVSSAQ2YD98 709 aa10.37□□□□□ -0.75
SCN9A-206ENST00000472119 AKNAQ7Z591 1439 aa10.37□□□□□ -0.75
SCN9A-206ENST00000472119 MUC3BQ9H195 1237 aa10.37□□□□□ -0.75
SCN9A-206ENST00000472119 CFDP1Q9UEE9 299 aaPredicted RBP10.37□□□□□ -0.75
SCN9A-206ENST00000472119 RTCBQ9Y3I0 505 aaKnown RBP10.37□□□□□ -0.75
SCN9A-206ENST00000472119 GPATCH8Q9UKJ3 1502 aaKnown RBP10.37□□□□□ -0.75
SCN9A-206ENST00000472119 LINC01387J3KSC0 135 aa10.36□□□□□ -0.75
SCN9A-206ENST00000472119 ARHGAP5Q13017 1502 aa10.36□□□□□ -0.75
SCN9A-206ENST00000472119 PHLDB1Q86UU1 1377 aa10.36□□□□□ -0.75
SCN9A-206ENST00000472119 NEO1Q92859 1461 aa10.36□□□□□ -0.75
SCN9A-206ENST00000472119 MMP20O60882 483 aa10.35□□□□□ -0.75
SCN9A-206ENST00000472119 IGFBP4P22692 258 aa10.35□□□□□ -0.75
SCN9A-206ENST00000472119 OGFOD2Q6N063 350 aa10.35□□□□□ -0.75
SCN9A-206ENST00000472119 CMTR1Q8N1G2 835 aaKnown RBP10.35□□□□□ -0.75
SCN9A-206ENST00000472119 SHKBP1Q8TBC3 707 aa10.35□□□□□ -0.75
SCN9A-206ENST00000472119 POM121Q96HA1 1249 aa10.35□□□□□ -0.75
SCN9A-206ENST00000472119 ZNF644Q9H582 1327 aaPredicted RBP10.34□□□□□ -0.75
SCN9A-206ENST00000472119 KDM6BO15054 1643 aa10.34□□□□□ -0.75
SCN9A-206ENST00000472119 CD68P34810 354 aaPredicted RBP10.34□□□□□ -0.75
SCN9A-206ENST00000472119 HDGFL1Q5TGJ6 251 aa10.34□□□□□ -0.75
SCN9A-206ENST00000472119 TXNDC11Q6PKC3 985 aa10.34□□□□□ -0.75
SCN9A-206ENST00000472119 FAM46AQ96IP4 442 aaKnown RBP10.34□□□□□ -0.75
SCN9A-206ENST00000472119 QTRT2Q9H974 415 aaKnown RBP10.34□□□□□ -0.75
SCN9A-206ENST00000472119 SCAPERQ9BY12 1400 aa10.33□□□□□ -0.76
SCN9A-206ENST00000472119 MYO5CQ9NQX4 1742 aa10.33□□□□□ -0.76
SCN9A-206ENST00000472119 EGFRP00533 1210 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms