RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 FAM117BQ6P1L5 589 aa6.27□□□□□ -1.41
VPS41-207ENST00000439468 XKR5Q6UX68 686 aa6.27□□□□□ -1.41
VPS41-207ENST00000439468 CACTIN-AS1Q8N1I8 211 aa6.27□□□□□ -1.41
VPS41-207ENST00000439468 SNX29Q8TEQ0 813 aa6.27□□□□□ -1.41
VPS41-207ENST00000439468 PMEPA1Q969W9 287 aa6.27□□□□□ -1.41
VPS41-207ENST00000439468 MUC3BQ9H195 1237 aa6.27□□□□□ -1.41
VPS41-207ENST00000439468 SEMA6BQ9H3T3 888 aa6.27□□□□□ -1.41
VPS41-207ENST00000439468 TPSG1Q9NRR2 321 aa6.27□□□□□ -1.41
VPS41-207ENST00000439468 FOXD3Q9UJU5 478 aaPredicted RBP6.27□□□□□ -1.41
VPS41-207ENST00000439468 EREGO14944 169 aa6.26□□□□□ -1.41
VPS41-207ENST00000439468 TNFRSF21O75509 655 aa6.26□□□□□ -1.41
VPS41-207ENST00000439468 IGF2-ASQ6U949 168 aa6.26□□□□□ -1.41
VPS41-207ENST00000439468 CEP120Q8N960 986 aa6.26□□□□□ -1.41
VPS41-207ENST00000439468 DCAF11Q8TEB1 546 aa6.26□□□□□ -1.41
VPS41-207ENST00000439468 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.26□□□□□ -1.41
VPS41-207ENST00000439468 NDUFB5O43674 189 aa6.25□□□□□ -1.41
VPS41-207ENST00000439468 TRPA1O75762 1119 aa6.25□□□□□ -1.41
VPS41-207ENST00000439468 IREB2P48200 963 aaKnown RBP6.25□□□□□ -1.41
VPS41-207ENST00000439468 CABP4P57796 275 aa6.25□□□□□ -1.41
VPS41-207ENST00000439468 MAP4K3Q8IVH8 894 aa6.25□□□□□ -1.41
VPS41-207ENST00000439468 CCER1Q8TC90 406 aaPredicted RBP6.25□□□□□ -1.41
VPS41-207ENST00000439468 TMC1Q8TDI8 760 aa6.25□□□□□ -1.41
VPS41-207ENST00000439468 TP53INP1Q96A56 240 aa6.25□□□□□ -1.41
VPS41-207ENST00000439468 CARD10Q9BWT7 1032 aa6.25□□□□□ -1.41
VPS41-207ENST00000439468 CHRDQ9H2X0 955 aa6.25□□□□□ -1.41
VPS41-207ENST00000439468 SRA1Q9HD15 236 aaKnown RBP6.25□□□□□ -1.41
VPS41-207ENST00000439468 SH2B1Q9NRF2 756 aaPredicted RBP6.25□□□□□ -1.41
VPS41-207ENST00000439468 SALL4Q9UJQ4 1053 aa6.25□□□□□ -1.41
VPS41-207ENST00000439468 PDE2AO00408 941 aaPredicted RBP6.24□□□□□ -1.41
VPS41-207ENST00000439468 EPHA1P21709 976 aa6.24□□□□□ -1.41
VPS41-207ENST00000439468 SETDB1Q15047 1291 aa6.24□□□□□ -1.41
VPS41-207ENST00000439468 ILDR2Q71H61 639 aa6.24□□□□□ -1.41
VPS41-207ENST00000439468 GJD3Q8N144 294 aa6.24□□□□□ -1.41
VPS41-207ENST00000439468 WFDC12Q8WWY7 111 aa6.24□□□□□ -1.41
VPS41-207ENST00000439468 POP1Q99575 1024 aaKnown RBP6.24□□□□□ -1.41
VPS41-207ENST00000439468 MRPL18Q9H0U6 180 aaKnown RBP6.24□□□□□ -1.41
VPS41-207ENST00000439468 GNEQ9Y223 722 aaKnown RBP6.24□□□□□ -1.41
VPS41-207ENST00000439468 AMOTL2Q9Y2J4 779 aa6.24□□□□□ -1.41
VPS41-207ENST00000439468 DLL1O00548 723 aa6.23□□□□□ -1.41
VPS41-207ENST00000439468 EDN3P14138 238 aa6.23□□□□□ -1.41
VPS41-207ENST00000439468 NOS3P29474 1203 aa6.23□□□□□ -1.41
VPS41-207ENST00000439468 TMCO4Q5TGY1 634 aa6.23□□□□□ -1.41
VPS41-207ENST00000439468 ASAP3Q8TDY4 903 aa6.23□□□□□ -1.41
VPS41-207ENST00000439468 HHIPQ96QV1 700 aa6.23□□□□□ -1.41
VPS41-207ENST00000439468 OSMRQ99650 979 aa6.23□□□□□ -1.41
VPS41-207ENST00000439468 AKTIPQ9H8T0 292 aa6.23□□□□□ -1.41
VPS41-207ENST00000439468 DZANK1Q9NVP4 752 aa6.23□□□□□ -1.41
VPS41-207ENST00000439468 BIN2Q9UBW5 565 aaPredicted RBP6.23□□□□□ -1.41
VPS41-207ENST00000439468 ALX3O95076 343 aa6.22□□□□□ -1.41
VPS41-207ENST00000439468 POLR3DP05423 398 aaPredicted RBP6.22□□□□□ -1.41
VPS41-207ENST00000439468 CD68P34810 354 aaPredicted RBP6.22□□□□□ -1.41
VPS41-207ENST00000439468 MFAP1P55081 439 aaKnown RBP6.22□□□□□ -1.41
VPS41-207ENST00000439468 RSPO4Q2I0M5 234 aaPredicted RBP6.22□□□□□ -1.41
VPS41-207ENST00000439468 ADAMTSL4Q6UY14 1074 aa6.22□□□□□ -1.41
VPS41-207ENST00000439468 SLC7A3Q8WY07 619 aa6.22□□□□□ -1.41
VPS41-207ENST00000439468 ZKSCAN3Q9BRR0 538 aa6.22□□□□□ -1.41
VPS41-207ENST00000439468 PATL2C9JE40 543 aaKnown RBP6.21□□□□□ -1.42
VPS41-207ENST00000439468 H3BRJ5 948 aa6.21□□□□□ -1.42
VPS41-207ENST00000439468 FSCN2O14926 492 aa6.21□□□□□ -1.42
VPS41-207ENST00000439468 GLB1P16278 677 aa6.21□□□□□ -1.42
VPS41-207ENST00000439468 PDE3BQ13370 1112 aa6.21□□□□□ -1.42
VPS41-207ENST00000439468 ACAD11Q709F0 780 aa6.21□□□□□ -1.42
VPS41-207ENST00000439468 AGGF1Q8N302 714 aaeCLIP6.21□□□□□ -1.42
VPS41-207ENST00000439468 GALNT11Q8NCW6 608 aa6.21□□□□□ -1.42
VPS41-207ENST00000439468 ZFYVE28Q9HCC9 887 aa6.21□□□□□ -1.42
VPS41-207ENST00000439468 SEC31BQ9NQW1 1179 aa6.21□□□□□ -1.42
VPS41-207ENST00000439468 LATS2Q9NRM7 1088 aa6.21□□□□□ -1.42
VPS41-207ENST00000439468 SOWAHDA6NJG2 315 aa6.2□□□□□ -1.42
VPS41-207ENST00000439468 F8W735 103 aaPredicted RBP6.2□□□□□ -1.42
VPS41-207ENST00000439468 DYRK3O43781 588 aa6.2□□□□□ -1.42
VPS41-207ENST00000439468 NEFLP07196 543 aa6.2□□□□□ -1.42
VPS41-207ENST00000439468 ARL4DP49703 201 aa6.2□□□□□ -1.42
VPS41-207ENST00000439468 ARHGAP4P98171 946 aa6.2□□□□□ -1.42
VPS41-207ENST00000439468 NKAPLQ5M9Q1 402 aa6.2□□□□□ -1.42
VPS41-207ENST00000439468 SND1Q7KZF4 910 aaKnown RBP eCLIP6.2□□□□□ -1.42
VPS41-207ENST00000439468 TMEM102Q8N9M5 508 aaPredicted RBP6.2□□□□□ -1.42
VPS41-207ENST00000439468 KLHL23Q8NBE8 558 aa6.2□□□□□ -1.42
VPS41-207ENST00000439468 MEGF10Q96KG7 1140 aa6.2□□□□□ -1.42
VPS41-207ENST00000439468 ADAM19Q9H013 955 aa6.2□□□□□ -1.42
VPS41-207ENST00000439468 NFKBIEO00221 500 aa6.19□□□□□ -1.42
VPS41-207ENST00000439468 DDX3YO15523 660 aaKnown RBP6.19□□□□□ -1.42
VPS41-207ENST00000439468 NLRP12P59046 1061 aa6.19□□□□□ -1.42
VPS41-207ENST00000439468 PIP4K2BP78356 416 aa6.19□□□□□ -1.42
VPS41-207ENST00000439468 ECM1Q16610 540 aa6.19□□□□□ -1.42
VPS41-207ENST00000439468 DUOXA2Q1HG44 320 aa6.19□□□□□ -1.42
VPS41-207ENST00000439468 FOXD4L6Q3SYB3 417 aaPredicted RBP6.19□□□□□ -1.42
VPS41-207ENST00000439468 FOXD4L3Q6VB84 417 aaPredicted RBP6.19□□□□□ -1.42
VPS41-207ENST00000439468 CCDC9Q9Y3X0 531 aaKnown RBP6.19□□□□□ -1.42
VPS41-207ENST00000439468 WISP1O95388 367 aa6.18□□□□□ -1.42
VPS41-207ENST00000439468 ORC1Q13415 861 aa6.18□□□□□ -1.42
VPS41-207ENST00000439468 IKBKEQ14164 716 aa6.18□□□□□ -1.42
VPS41-207ENST00000439468 UBASH3BQ8TF42 649 aa6.18□□□□□ -1.42
VPS41-207ENST00000439468 FOXD4L4Q8WXT5 416 aaPredicted RBP6.18□□□□□ -1.42
VPS41-207ENST00000439468 BSNDQ8WZ55 320 aa6.18□□□□□ -1.42
VPS41-207ENST00000439468 NXPE3Q969Y0 559 aa6.18□□□□□ -1.42
VPS41-207ENST00000439468 KLHDC7BQ96G42 594 aa6.18□□□□□ -1.42
VPS41-207ENST00000439468 KCNK4Q9NYG8 393 aa6.18□□□□□ -1.42
VPS41-207ENST00000439468 CCDC27Q2M243 656 aa6.17□□□□□ -1.42
VPS41-207ENST00000439468 XP32Q5T750 250 aa6.17□□□□□ -1.42
VPS41-207ENST00000439468 PEAR1Q5VY43 1037 aaPredicted RBP6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms