RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 SH3TC2Q8TF17 1288 aa3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 SKA1Q96BD8 255 aa3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 MASTLQ96GX5 879 aa3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 SAP30BPQ9UHR5 308 aaKnown RBP3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 C2CD3Q4AC94 2353 aa3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.37□□□□□ -1.872e-10■■■■□ 23.5
CCDC88A-205ENST00000426576 CLRN2A0PK11 232 aa3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 FYB1O15117 783 aa3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 TLL1O43897 1013 aa3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 ARID5AQ03989 594 aa3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 LARP1Q6PKG0 1096 aaKnown RBP3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 PRR23CQ6ZRP0 262 aa3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 BCCIPQ9P287 314 aaKnown RBP eCLIP3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 DBR1Q9UK59 544 aaKnown RBP3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 TACC3Q9Y6A5 838 aa3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 RARBP10826 455 aa3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 WASHC4Q2M389 1173 aa3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 PSRC1Q6PGN9 363 aaPredicted RBP3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 FERMT2Q96AC1 680 aa3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 CCDC141Q6ZP82 1450 aa3.37□□□□□ -1.87
CCDC88A-205ENST00000426576 UPP2O95045 317 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 BCAMP50895 628 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 CLUL1Q15846 466 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 BAP1Q92560 729 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 SIRT1Q96EB6 747 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 TNIP3Q96KP6 325 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 SRCIN1Q9C0H9 1055 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 STARD7Q9NQZ5 370 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 RNF186Q9NXI6 227 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 GGA3Q9NZ52 723 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 DPP7Q9UHL4 492 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 ADGRF5Q8IZF2 1346 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 GNRH1P01148 92 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 FGBP02675 491 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 FSHRP23945 695 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 FPGSQ05932 587 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 DOC2BQ14184 412 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 UBXN2BQ14CS0 331 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 LLGL1Q15334 1064 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 HAUS6Q7Z4H7 955 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 RSPH3Q86UC2 560 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 FNBP4Q8N3X1 1017 aaPredicted RBP3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 U2AF1L4Q8WU68 220 aaKnown RBP3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 PHKBQ93100 1093 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 RGS17Q9UGC6 210 aaPredicted RBP3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 HDAC5Q9UQL6 1122 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 RAD54L2Q9Y4B4 1467 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 PLCE1Q9P212 2302 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 CCDC88BA6NC98 1476 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 H0Y858 1186 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 NCK2O43639 380 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 PPFIA3O75145 1194 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 ADSLP30566 484 aaPredicted RBP3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 LMBRD2Q68DH5 695 aaPredicted RBP3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 FASTKD5Q7L8L6 764 aaKnown RBP3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 MYOCDQ8IZQ8 938 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 GANCQ8TET4 914 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 BCAS3Q9H6U6 928 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 TLR9Q9NR96 1032 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 SPATA6Q9NWH7 488 aaPredicted RBP3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 FNDC3AQ9Y2H6 1198 aaKnown RBP3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 LMNAP02545 664 aaKnown RBP3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 NOVA1P51513 510 aaKnown RBP3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 FKBP1BP68106 108 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 PODNQ7Z5L7 613 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 RNF169Q8NCN4 708 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 STAMQ92783 540 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 IL17RAQ96F46 866 aa3.36□□□□□ -1.87
CCDC88A-205ENST00000426576 IQSEC2Q5JU85 1478 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 SRGAP2CP0DJJ0 459 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 AMPD2Q01433 879 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 KCNH2Q12809 1159 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 RRS1Q15050 365 aaKnown RBP3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 INAVAQ3KP66 663 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 GPC2Q8N158 579 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 CAMKK2Q96RR4 588 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 APOL6Q9BWW8 343 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 ABCG4Q9H172 646 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 NXF1Q9UBU9 619 aaKnown RBP3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 PCDHB11Q9Y5F2 797 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 CNTNAP1P78357 1384 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 EIF4G3O43432 1585 aaKnown RBP3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 DDX58O95786 925 aaKnown RBP3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 HLA-DOAP06340 250 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 TRIM21P19474 475 aaKnown RBP3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 ELF1P32519 619 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 TIGD5Q53EQ6 642 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 HSP90AB3PQ58FF7 597 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 PTCRAQ6ISU1 281 aaPredicted RBP3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 TRMT44Q8IYL2 757 aaKnown RBP3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 IFNL2Q8IZJ0 200 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 LRCH3Q96II8 777 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 SEMA4AQ9H3S1 761 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 ZNF576Q9H609 170 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 USP29Q9HBJ7 922 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 NAV2Q8IVL1 2488 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 ACACBO00763 2458 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 CES2O00748 559 aa3.35□□□□□ -1.87
CCDC88A-205ENST00000426576 PRC1O43663 620 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms