RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 ZAP70P43403 619 aa6.29□□□□□ -1.4
HMGB1-204ENST00000399489 NAA30Q147X3 362 aaPredicted RBP6.29□□□□□ -1.4
HMGB1-204ENST00000399489 TTC16Q8NEE8 873 aa6.29□□□□□ -1.4
HMGB1-204ENST00000399489 CLP1Q92989 425 aaKnown RBP6.29□□□□□ -1.4
HMGB1-204ENST00000399489 STIM2Q9P246 746 aa6.29□□□□□ -1.4
HMGB1-204ENST00000399489 KRTAP9-7A8MTY7 169 aa6.28□□□□□ -1.4
HMGB1-204ENST00000399489 PCSK2P16519 638 aa6.28□□□□□ -1.4
HMGB1-204ENST00000399489 NOS3P29474 1203 aa6.28□□□□□ -1.4
HMGB1-204ENST00000399489 KCNA1Q09470 495 aa6.28□□□□□ -1.4
HMGB1-204ENST00000399489 FAM69CQ0P6D2 419 aa6.28□□□□□ -1.4
HMGB1-204ENST00000399489 TMEM164Q5U3C3 297 aa6.28□□□□□ -1.4
HMGB1-204ENST00000399489 FAM117BQ6P1L5 589 aa6.28□□□□□ -1.4
HMGB1-204ENST00000399489 OR13H1Q8NG92 308 aa6.28□□□□□ -1.4
HMGB1-204ENST00000399489 SSBP4Q9BWG4 385 aaPredicted RBP6.28□□□□□ -1.4
HMGB1-204ENST00000399489 DLL1O00548 723 aa6.28□□□□□ -1.4
HMGB1-204ENST00000399489 PDE4CQ08493 712 aa6.28□□□□□ -1.4
HMGB1-204ENST00000399489 PPME1Q9Y570 386 aa6.28□□□□□ -1.4
HMGB1-204ENST00000399489 DEAF1O75398 565 aaPredicted RBP6.27□□□□□ -1.41
HMGB1-204ENST00000399489 SLC51AQ86UW1 340 aa6.27□□□□□ -1.41
HMGB1-204ENST00000399489 FAM177A1Q8N128 213 aaPredicted RBP6.27□□□□□ -1.41
HMGB1-204ENST00000399489 TMEM130Q8N3G9 435 aa6.27□□□□□ -1.41
HMGB1-204ENST00000399489 GPR152Q8TDT2 470 aa6.27□□□□□ -1.41
HMGB1-204ENST00000399489 TNFRSF10BO14763 440 aa6.26□□□□□ -1.41
HMGB1-204ENST00000399489 BRD1O95696 1058 aa6.26□□□□□ -1.41
HMGB1-204ENST00000399489 ATP2B4P23634 1241 aa6.26□□□□□ -1.41
HMGB1-204ENST00000399489 IRAK1P51617 712 aa6.26□□□□□ -1.41
HMGB1-204ENST00000399489 TRIP4Q15650 581 aaPredicted RBP6.26□□□□□ -1.41
HMGB1-204ENST00000399489 CEP135Q66GS9 1140 aa6.26□□□□□ -1.41
HMGB1-204ENST00000399489 TRIM33Q9UPN9 1127 aa6.26□□□□□ -1.41
HMGB1-204ENST00000399489 CDC27P30260 824 aa6.25□□□□□ -1.41
HMGB1-204ENST00000399489 SRPK2P78362 688 aaKnown RBP6.25□□□□□ -1.41
HMGB1-204ENST00000399489 MEGF10Q96KG7 1140 aa6.25□□□□□ -1.41
HMGB1-204ENST00000399489 ABI2Q9NYB9 513 aaPredicted RBP6.25□□□□□ -1.41
HMGB1-204ENST00000399489 F8W735 103 aaPredicted RBP6.25□□□□□ -1.41
HMGB1-204ENST00000399489 CCDC27Q2M243 656 aa6.25□□□□□ -1.41
HMGB1-204ENST00000399489 PRR23CQ6ZRP0 262 aa6.25□□□□□ -1.41
HMGB1-204ENST00000399489 NCAPG2Q86XI2 1143 aa6.25□□□□□ -1.41
HMGB1-204ENST00000399489 GLB1P16278 677 aa6.24□□□□□ -1.41
HMGB1-204ENST00000399489 PTPRAP18433 802 aa6.24□□□□□ -1.41
HMGB1-204ENST00000399489 FBLN7Q53RD9 439 aa6.24□□□□□ -1.41
HMGB1-204ENST00000399489 PDE12Q6L8Q7 609 aaKnown RBP6.24□□□□□ -1.41
HMGB1-204ENST00000399489 TAL1P17542 331 aaPredicted RBP6.23□□□□□ -1.41
HMGB1-204ENST00000399489 CABP4P57796 275 aa6.23□□□□□ -1.41
HMGB1-204ENST00000399489 SETDB1Q15047 1291 aa6.23□□□□□ -1.41
HMGB1-204ENST00000399489 ZNF438Q7Z4V0 828 aa6.23□□□□□ -1.41
HMGB1-204ENST00000399489 CEP41Q9BYV8 373 aa6.23□□□□□ -1.41
HMGB1-204ENST00000399489 LACRTQ9GZZ8 138 aa6.23□□□□□ -1.41
HMGB1-204ENST00000399489 IGSF5Q9NSI5 407 aa6.23□□□□□ -1.41
HMGB1-204ENST00000399489 LINC01387J3KSC0 135 aa6.22□□□□□ -1.41
HMGB1-204ENST00000399489 GSC2O15499 205 aa6.22□□□□□ -1.41
HMGB1-204ENST00000399489 CAPN12Q6ZSI9 719 aa6.22□□□□□ -1.41
HMGB1-204ENST00000399489 DZIP1LQ8IYY4 767 aaKnown RBP6.22□□□□□ -1.41
HMGB1-204ENST00000399489 KLHL23Q8NBE8 558 aa6.22□□□□□ -1.41
HMGB1-204ENST00000399489 RNF112Q9ULX5 631 aa6.22□□□□□ -1.41
HMGB1-204ENST00000399489 UNCXA6NJT0 531 aa6.22□□□□□ -1.41
HMGB1-204ENST00000399489 ALX3O95076 343 aa6.22□□□□□ -1.41
HMGB1-204ENST00000399489 CD68P34810 354 aaPredicted RBP6.22□□□□□ -1.41
HMGB1-204ENST00000399489 ATP11AP98196 1134 aa6.22□□□□□ -1.41
HMGB1-204ENST00000399489 ALKBH2Q6NS38 261 aa6.22□□□□□ -1.41
HMGB1-204ENST00000399489 SND1Q7KZF4 910 aaKnown RBP eCLIP6.22□□□□□ -1.41
HMGB1-204ENST00000399489 PMEPA1Q969W9 287 aa6.22□□□□□ -1.41
HMGB1-204ENST00000399489 NUDT16Q96DE0 195 aaKnown RBP6.22□□□□□ -1.41
HMGB1-204ENST00000399489 PBX4Q9BYU1 374 aa6.22□□□□□ -1.41
HMGB1-204ENST00000399489 RASSF4Q9H2L5 321 aa6.22□□□□□ -1.41
HMGB1-204ENST00000399489 ELP3Q9H9T3 547 aa6.22□□□□□ -1.41
HMGB1-204ENST00000399489 KIF4AO95239 1232 aa6.21□□□□□ -1.42
HMGB1-204ENST00000399489 FSTP19883 344 aa6.21□□□□□ -1.42
HMGB1-204ENST00000399489 NOM1Q5C9Z4 860 aaKnown RBP6.21□□□□□ -1.42
HMGB1-204ENST00000399489 FAM26DQ5JW98 314 aa6.21□□□□□ -1.42
HMGB1-204ENST00000399489 USTQ9Y2C2 406 aa6.21□□□□□ -1.42
HMGB1-204ENST00000399489 RAXQ9Y2V3 346 aa6.21□□□□□ -1.42
HMGB1-204ENST00000399489 COL13A1Q5TAT6 717 aaPredicted RBP6.2□□□□□ -1.42
HMGB1-204ENST00000399489 ACAD11Q709F0 780 aa6.2□□□□□ -1.42
HMGB1-204ENST00000399489 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.2□□□□□ -1.42
HMGB1-204ENST00000399489 HELQQ8TDG4 1101 aa6.2□□□□□ -1.42
HMGB1-204ENST00000399489 FSCN2O14926 492 aa6.19□□□□□ -1.42
HMGB1-204ENST00000399489 ZBTB39O15060 712 aa6.19□□□□□ -1.42
HMGB1-204ENST00000399489 DHX15O43143 795 aaKnown RBP6.19□□□□□ -1.42
HMGB1-204ENST00000399489 CDC25BP30305 580 aa6.19□□□□□ -1.42
HMGB1-204ENST00000399489 ARL4DP49703 201 aa6.19□□□□□ -1.42
HMGB1-204ENST00000399489 DUOXA2Q1HG44 320 aa6.19□□□□□ -1.42
HMGB1-204ENST00000399489 AGGF1Q8N302 714 aaeCLIP6.19□□□□□ -1.424e-7■■■■□ 23
HMGB1-204ENST00000399489 EDEM1Q92611 657 aa6.19□□□□□ -1.42
HMGB1-204ENST00000399489 SEPT3Q9UH03 358 aa6.19□□□□□ -1.42
HMGB1-204ENST00000399489 CES1P23141 567 aa6.19□□□□□ -1.42
HMGB1-204ENST00000399489 DNM1Q05193 864 aaKnown RBP6.19□□□□□ -1.42
HMGB1-204ENST00000399489 AAMPQ13685 434 aa6.19□□□□□ -1.42
HMGB1-204ENST00000399489 UVSSAQ2YD98 709 aa6.19□□□□□ -1.42
HMGB1-204ENST00000399489 C8orf34Q49A92 452 aa6.19□□□□□ -1.42
HMGB1-204ENST00000399489 Q6ZS46 218 aa6.19□□□□□ -1.42
HMGB1-204ENST00000399489 WNT8BQ93098 351 aa6.19□□□□□ -1.42
HMGB1-204ENST00000399489 KRTAP9-3Q9BYQ3 159 aa6.19□□□□□ -1.42
HMGB1-204ENST00000399489 SEC31BQ9NQW1 1179 aa6.19□□□□□ -1.42
HMGB1-204ENST00000399489 PCMTD2Q9NV79 361 aa6.19□□□□□ -1.42
HMGB1-204ENST00000399489 STOML1Q9UBI4 398 aa6.19□□□□□ -1.42
HMGB1-204ENST00000399489 IVNS1ABPQ9Y6Y0 642 aa6.19□□□□□ -1.42
HMGB1-204ENST00000399489 SART1O43290 800 aaKnown RBP6.18□□□□□ -1.42
HMGB1-204ENST00000399489 MZF1P28698 734 aaPredicted RBP6.18□□□□□ -1.42
HMGB1-204ENST00000399489 TXNDC11Q6PKC3 985 aa6.18□□□□□ -1.42
HMGB1-204ENST00000399489 XKR5Q6UX68 686 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 234.8 ms