RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 SAMD7Q7Z3H4 446 aa9.72□□□□□ -0.85
LIMS1-203ENST00000393310 COA1Q9GZY4 146 aa9.72□□□□□ -0.85
LIMS1-203ENST00000393310 MPHOSPH10O00566 681 aaKnown RBP9.72□□□□□ -0.85
LIMS1-203ENST00000393310 PDE8AO60658 829 aa9.72□□□□□ -0.85
LIMS1-203ENST00000393310 SUDS3Q9H7L9 328 aaPredicted RBP9.72□□□□□ -0.85
LIMS1-203ENST00000393310 MAP3K15Q6ZN16 1313 aa9.71□□□□□ -0.85
LIMS1-203ENST00000393310 COPS6Q7L5N1 327 aa9.71□□□□□ -0.85
LIMS1-203ENST00000393310 GPHNQ9NQX3 736 aaPredicted RBP9.71□□□□□ -0.85
LIMS1-203ENST00000393310 MBIPQ9NS73 344 aa9.71□□□□□ -0.85
LIMS1-203ENST00000393310 VGLL3A8MV65 326 aa9.71□□□□□ -0.85
LIMS1-203ENST00000393310 G3BP1Q13283 466 aaKnown RBP eCLIP9.71□□□□□ -0.85
LIMS1-203ENST00000393310 ITSN1Q15811 1721 aa9.71□□□□□ -0.85
LIMS1-203ENST00000393310 UPF2Q9HAU5 1272 aaKnown RBP9.71□□□□□ -0.85
LIMS1-203ENST00000393310 LRRC4BQ9NT99 713 aa9.71□□□□□ -0.85
LIMS1-203ENST00000393310 NWD2Q9ULI1 1742 aa9.71□□□□□ -0.85
LIMS1-203ENST00000393310 AKAP2Q9Y2D5 859 aa9.71□□□□□ -0.85
LIMS1-203ENST00000393310 METTL24Q5JXM2 366 aa9.71□□□□□ -0.86
LIMS1-203ENST00000393310 SOS1Q07889 1333 aaPredicted RBP9.71□□□□□ -0.86
LIMS1-203ENST00000393310 KIF7Q2M1P5 1343 aa9.71□□□□□ -0.86
LIMS1-203ENST00000393310 KBTBD13C9JR72 458 aa9.7□□□□□ -0.86
LIMS1-203ENST00000393310 HMMRO75330 724 aa9.7□□□□□ -0.86
LIMS1-203ENST00000393310 NAP1L1P55209 391 aaKnown RBP9.7□□□□□ -0.86
LIMS1-203ENST00000393310 NECAB2Q7Z6G3 386 aa9.7□□□□□ -0.86
LIMS1-203ENST00000393310 ZNF496Q96IT1 587 aaPredicted RBP9.7□□□□□ -0.86
LIMS1-203ENST00000393310 C1orf115Q9H7X2 142 aa9.7□□□□□ -0.86
LIMS1-203ENST00000393310 ATP6V0A2Q9Y487 856 aa9.7□□□□□ -0.86
LIMS1-203ENST00000393310 PRAMEF22A3QJZ6 481 aa9.7□□□□□ -0.86
LIMS1-203ENST00000393310 ARMCX6Q7L4S7 300 aa9.7□□□□□ -0.86
LIMS1-203ENST00000393310 GGA3Q9NZ52 723 aa9.7□□□□□ -0.86
LIMS1-203ENST00000393310 UNCXA6NJT0 531 aa9.7□□□□□ -0.86
LIMS1-203ENST00000393310 CNTNAP1P78357 1384 aa9.7□□□□□ -0.86
LIMS1-203ENST00000393310 CNGA1P29973 690 aa9.7□□□□□ -0.86
LIMS1-203ENST00000393310 TTLL5Q6EMB2 1281 aa9.7□□□□□ -0.86
LIMS1-203ENST00000393310 TEKT1Q969V4 418 aa9.7□□□□□ -0.86
LIMS1-203ENST00000393310 POLKQ9UBT6 870 aa9.7□□□□□ -0.86
LIMS1-203ENST00000393310 FOXN1O15353 648 aa9.69□□□□□ -0.86
LIMS1-203ENST00000393310 A1BGP04217 495 aa9.69□□□□□ -0.86
LIMS1-203ENST00000393310 ZNF341Q9BYN7 854 aa9.69□□□□□ -0.86
LIMS1-203ENST00000393310 ZHX1Q9UKY1 873 aaPredicted RBP9.69□□□□□ -0.86
LIMS1-203ENST00000393310 HMGN5P82970 282 aaKnown RBP9.69□□□□□ -0.86
LIMS1-203ENST00000393310 ELMSAN1Q6PJG2 1045 aa9.69□□□□□ -0.86
LIMS1-203ENST00000393310 GADL1Q6ZQY3 521 aa9.69□□□□□ -0.86
LIMS1-203ENST00000393310 CCDC24Q8N4L8 307 aa9.69□□□□□ -0.86
LIMS1-203ENST00000393310 WDR66Q8TBY9 1149 aa9.69□□□□□ -0.86
LIMS1-203ENST00000393310 TLL2Q9Y6L7 1015 aa9.69□□□□□ -0.86
LIMS1-203ENST00000393310 NCAPD2Q15021 1401 aa9.69□□□□□ -0.86
LIMS1-203ENST00000393310 CYP19A1P11511 503 aaPredicted RBP9.68□□□□□ -0.86
LIMS1-203ENST00000393310 TRAF1Q13077 416 aa9.68□□□□□ -0.86
LIMS1-203ENST00000393310 AOC3Q16853 763 aa9.68□□□□□ -0.86
LIMS1-203ENST00000393310 GPRC5DQ9NZD1 345 aa9.68□□□□□ -0.86
LIMS1-203ENST00000393310 LRP5O75197 1615 aa9.68□□□□□ -0.86
LIMS1-203ENST00000393310 POLRMTO00411 1230 aaKnown RBP9.68□□□□□ -0.86
LIMS1-203ENST00000393310 MYCP01106 439 aaPredicted RBP9.68□□□□□ -0.86
LIMS1-203ENST00000393310 GSE1Q14687 1217 aa9.68□□□□□ -0.86
LIMS1-203ENST00000393310 CCDC158Q5M9N0 1113 aa9.68□□□□□ -0.86
LIMS1-203ENST00000393310 RUNDC1Q96C34 613 aa9.68□□□□□ -0.86
LIMS1-203ENST00000393310 HEG1Q9ULI3 1381 aa9.68□□□□□ -0.86
LIMS1-203ENST00000393310 E9PCH4 1651 aa9.68□□□□□ -0.86
LIMS1-203ENST00000393310 RASSF10A6NK89 507 aa9.68□□□□□ -0.86
LIMS1-203ENST00000393310 MSNP26038 577 aaKnown RBP9.68□□□□□ -0.86
LIMS1-203ENST00000393310 ARRDC4Q8NCT1 418 aa9.68□□□□□ -0.86
LIMS1-203ENST00000393310 CCDC97Q96F63 343 aaPredicted RBP9.68□□□□□ -0.86
LIMS1-203ENST00000393310 FARP2O94887 1054 aaPredicted RBP9.68□□□□□ -0.86
LIMS1-203ENST00000393310 HOXB7P09629 217 aa9.68□□□□□ -0.86
LIMS1-203ENST00000393310 LDHAL6AQ6ZMR3 332 aa9.68□□□□□ -0.86
LIMS1-203ENST00000393310 MYD88Q99836 296 aa9.68□□□□□ -0.86
LIMS1-203ENST00000393310 RNF216Q9NWF9 866 aaPredicted RBP9.68□□□□□ -0.86
LIMS1-203ENST00000393310 F8W031 263 aaPredicted RBP9.67□□□□□ -0.86
LIMS1-203ENST00000393310 MKRN3Q13064 507 aaKnown RBP9.67□□□□□ -0.86
LIMS1-203ENST00000393310 WBP1LQ9NX94 342 aa9.67□□□□□ -0.86
LIMS1-203ENST00000393310 GIGYF2Q6Y7W6 1299 aaKnown RBP9.67□□□□□ -0.86
LIMS1-203ENST00000393310 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.67□□□□□ -0.86
LIMS1-203ENST00000393310 PLBD2Q8NHP8 589 aa9.67□□□□□ -0.86
LIMS1-203ENST00000393310 L3MBTL3Q96JM7 780 aaPredicted RBP9.67□□□□□ -0.86
LIMS1-203ENST00000393310 GLIS2Q9BZE0 524 aaPredicted RBP9.67□□□□□ -0.86
LIMS1-203ENST00000393310 XRN1Q8IZH2 1706 aaKnown RBP9.67□□□□□ -0.86
LIMS1-203ENST00000393310 NPC1L1Q9UHC9 1359 aa9.67□□□□□ -0.86
LIMS1-203ENST00000393310 CCL15-CCL14A0A0B4J2E2 113 aa9.67□□□□□ -0.86
LIMS1-203ENST00000393310 ECE2O60344 883 aa9.67□□□□□ -0.86
LIMS1-203ENST00000393310 HSPA8P11142 646 aaKnown RBP9.67□□□□□ -0.86
LIMS1-203ENST00000393310 KIAA2012Q0VF49 1180 aa9.67□□□□□ -0.86
LIMS1-203ENST00000393310 CCL15Q16663 113 aa9.67□□□□□ -0.86
LIMS1-203ENST00000393310 CCDC191Q8NCU4 936 aa9.67□□□□□ -0.86
LIMS1-203ENST00000393310 TBC1D2Q9BYX2 928 aa9.67□□□□□ -0.86
LIMS1-203ENST00000393310 RNF208Q9H0X6 261 aa9.67□□□□□ -0.86
LIMS1-203ENST00000393310 SRGNP10124 158 aa9.66□□□□□ -0.86
LIMS1-203ENST00000393310 FAM13BQ9NYF5 915 aa9.66□□□□□ -0.86
LIMS1-203ENST00000393310 ITPK1Q13572 414 aa9.66□□□□□ -0.86
LIMS1-203ENST00000393310 DOK7Q18PE1 504 aa9.66□□□□□ -0.86
LIMS1-203ENST00000393310 TBC1D9BQ66K14 1250 aa9.66□□□□□ -0.86
LIMS1-203ENST00000393310 RAI14Q9P0K7 980 aa9.66□□□□□ -0.86
LIMS1-203ENST00000393310 MSRAQ9UJ68 235 aa9.66□□□□□ -0.86
LIMS1-203ENST00000393310 PNMA2Q9UL42 364 aa9.66□□□□□ -0.86
LIMS1-203ENST00000393310 TDO2P48775 406 aa9.66□□□□□ -0.86
LIMS1-203ENST00000393310 FOXD4L6Q3SYB3 417 aaPredicted RBP9.66□□□□□ -0.86
LIMS1-203ENST00000393310 FOXD4L3Q6VB84 417 aaPredicted RBP9.66□□□□□ -0.86
LIMS1-203ENST00000393310 MTMR7Q9Y216 660 aa9.66□□□□□ -0.86
LIMS1-203ENST00000393310 GPR25O00155 361 aa9.66□□□□□ -0.86
LIMS1-203ENST00000393310 ACTN1P12814 892 aa9.66□□□□□ -0.86
LIMS1-203ENST00000393310 FAM177A1Q8N128 213 aaPredicted RBP9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms